HEADER ANTIMICROBIAL PROTEIN 31-JUL-20 6ZYA TITLE EXTENDED HUMAN UROMODULIN FILAMENT CORE AT 3.5 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: UROMODULIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TAMM-HORSFALL URINARY GLYCOPROTEIN,THP SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606 KEYWDS UROMODULIN, UMOD, THP, IMMUNOGLOBULIN-LIKE FOLD, TAMM-HORSFALL KEYWDS 2 PROTEIN, GLYCOPROTEIN, ZP MODULE, ZONA PELLUCIDA, FOLD KEYWDS 3 COMPLEMENTATION, BETA-STRAND COMPLEMENTATION, CRYOSPARC, FILAMENT, KEYWDS 4 SOLUBLE ADHESION ANTAGONIST, ANTIMICROBIAL PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR J.J.STANISICH,D.ZYLA,P.AFANASYEV,J.XU,M.PILHOFER,D.BOERINGER, AUTHOR 2 R.GLOCKSHUBER REVDAT 1 02-SEP-20 6ZYA 0 JRNL AUTH J.J.STANISICH,D.S.ZYLA,P.AFANASYEV,J.XU,A.KIPP,E.OLINGER, JRNL AUTH 2 O.DEVUYST,M.PILHOFER,D.BOEHRINGER,R.GLOCKSHUBER JRNL TITL THE CRYO-EM STRUCTURE OF THE HUMAN UROMODULIN FILAMENT CORE JRNL TITL 2 REVEALS A UNIQUE ASSEMBLY MECHANISM. JRNL REF ELIFE V. 9 2020 JRNL REFN ESSN 2050-084X JRNL PMID 32815518 JRNL DOI 10.7554/ELIFE.60265 REMARK 2 REMARK 2 RESOLUTION. 3.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : EPU, UCSF CHIMERA, CRYOSPARC, PHENIX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 6ZS5 REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : RIGID BODY FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.500 REMARK 3 NUMBER OF PARTICLES : 145000 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 6ZYA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-JUL-20. REMARK 100 THE DEPOSITION ID IS D_1292110465. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : FILAMENT REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : EXTENDED HUMAN UROMODULIN REMARK 245 FILAMENT REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 1.58 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : 3.5 UL SAMPLE, 30 S WAIT TIME, REMARK 245 0.5 S DRAIN TIME, 13.5 S REMARK 245 BLOTTING FROM THE BACK REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.20 REMARK 245 SAMPLE DETAILS : EXTENDED HUMAN UROMODULIN REMARK 245 FILAMENT REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 9543 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 800.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 3300.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 45.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 130000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.999300 0.034760 0.012860 0.48890 REMARK 350 BIOMT2 2 -0.034630 0.999300 -0.010260 12.22000 REMARK 350 BIOMT3 2 -0.013210 0.009811 0.999900 -127.90000 REMARK 350 BIOMT1 3 -0.990000 0.023980 -0.138800 356.70000 REMARK 350 BIOMT2 3 -0.015580 -0.998000 -0.061300 358.70000 REMARK 350 BIOMT3 3 -0.140000 -0.058530 0.988400 100.30000 REMARK 350 BIOMT1 4 -0.990000 0.003783 -0.141000 369.70000 REMARK 350 BIOMT2 4 0.004769 -0.998200 -0.060260 359.00000 REMARK 350 BIOMT3 4 -0.141000 -0.060330 0.988200 -27.53000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 GLN A 3 REMARK 465 PRO A 4 REMARK 465 SER A 5 REMARK 465 LEU A 6 REMARK 465 THR A 7 REMARK 465 TRP A 8 REMARK 465 MET A 9 REMARK 465 LEU A 10 REMARK 465 MET A 11 REMARK 465 VAL A 12 REMARK 465 VAL A 13 REMARK 465 VAL A 14 REMARK 465 ALA A 15 REMARK 465 SER A 16 REMARK 465 TRP A 17 REMARK 465 PHE A 18 REMARK 465 ILE A 19 REMARK 465 THR A 20 REMARK 465 THR A 21 REMARK 465 ALA A 22 REMARK 465 ALA A 23 REMARK 465 THR A 24 REMARK 465 ASP A 25 REMARK 465 THR A 26 REMARK 465 SER A 27 REMARK 465 GLU A 28 REMARK 465 ALA A 29 REMARK 465 ARG A 30 REMARK 465 TRP A 31 REMARK 465 CYS A 32 REMARK 465 SER A 33 REMARK 465 GLU A 34 REMARK 465 CYS A 35 REMARK 465 HIS A 36 REMARK 465 SER A 37 REMARK 465 ASN A 38 REMARK 465 ALA A 39 REMARK 465 THR A 40 REMARK 465 CYS A 41 REMARK 465 THR A 42 REMARK 465 GLU A 43 REMARK 465 ASP A 44 REMARK 465 GLU A 45 REMARK 465 ALA A 46 REMARK 465 VAL A 47 REMARK 465 THR A 48 REMARK 465 THR A 49 REMARK 465 CYS A 50 REMARK 465 THR A 51 REMARK 465 CYS A 52 REMARK 465 GLN A 53 REMARK 465 GLU A 54 REMARK 465 GLY A 55 REMARK 465 PHE A 56 REMARK 465 THR A 57 REMARK 465 GLY A 58 REMARK 465 ASP A 59 REMARK 465 GLY A 60 REMARK 465 LEU A 61 REMARK 465 THR A 62 REMARK 465 CYS A 63 REMARK 465 VAL A 64 REMARK 465 ASP A 65 REMARK 465 LEU A 66 REMARK 465 ASP A 67 REMARK 465 GLU A 68 REMARK 465 CYS A 69 REMARK 465 ALA A 70 REMARK 465 ILE A 71 REMARK 465 PRO A 72 REMARK 465 GLY A 73 REMARK 465 ALA A 74 REMARK 465 HIS A 75 REMARK 465 ASN A 76 REMARK 465 CYS A 77 REMARK 465 SER A 78 REMARK 465 ALA A 79 REMARK 465 ASN A 80 REMARK 465 SER A 81 REMARK 465 SER A 82 REMARK 465 CYS A 83 REMARK 465 VAL A 84 REMARK 465 ASN A 85 REMARK 465 THR A 86 REMARK 465 PRO A 87 REMARK 465 GLY A 88 REMARK 465 SER A 89 REMARK 465 PHE A 90 REMARK 465 SER A 91 REMARK 465 CYS A 92 REMARK 465 VAL A 93 REMARK 465 CYS A 94 REMARK 465 PRO A 95 REMARK 465 GLU A 96 REMARK 465 GLY A 97 REMARK 465 PHE A 98 REMARK 465 ARG A 99 REMARK 465 LEU A 100 REMARK 465 SER A 101 REMARK 465 PRO A 102 REMARK 465 GLY A 103 REMARK 465 LEU A 104 REMARK 465 GLY A 105 REMARK 465 CYS A 106 REMARK 465 THR A 107 REMARK 465 ASP A 108 REMARK 465 VAL A 109 REMARK 465 ASP A 110 REMARK 465 GLU A 111 REMARK 465 CYS A 112 REMARK 465 ALA A 113 REMARK 465 GLU A 114 REMARK 465 PRO A 115 REMARK 465 GLY A 116 REMARK 465 LEU A 117 REMARK 465 SER A 118 REMARK 465 HIS A 119 REMARK 465 CYS A 120 REMARK 465 HIS A 121 REMARK 465 ALA A 122 REMARK 465 LEU A 123 REMARK 465 ALA A 124 REMARK 465 THR A 125 REMARK 465 CYS A 126 REMARK 465 VAL A 127 REMARK 465 ASN A 128 REMARK 465 VAL A 129 REMARK 465 VAL A 130 REMARK 465 GLY A 131 REMARK 465 SER A 132 REMARK 465 TYR A 133 REMARK 465 LEU A 134 REMARK 465 CYS A 135 REMARK 465 VAL A 136 REMARK 465 CYS A 137 REMARK 465 PRO A 138 REMARK 465 ALA A 139 REMARK 465 GLY A 140 REMARK 465 TYR A 141 REMARK 465 ARG A 142 REMARK 465 GLY A 143 REMARK 465 ASP A 144 REMARK 465 GLY A 145 REMARK 465 TRP A 146 REMARK 465 HIS A 147 REMARK 465 CYS A 148 REMARK 465 GLU A 149 REMARK 465 CYS A 150 REMARK 465 SER A 151 REMARK 465 PRO A 152 REMARK 465 GLY A 153 REMARK 465 SER A 154 REMARK 465 CYS A 155 REMARK 465 GLY A 156 REMARK 465 PRO A 157 REMARK 465 GLY A 158 REMARK 465 LEU A 159 REMARK 465 ASP A 160 REMARK 465 CYS A 161 REMARK 465 VAL A 162 REMARK 465 PRO A 163 REMARK 465 GLU A 164 REMARK 465 GLY A 165 REMARK 465 ASP A 166 REMARK 465 ALA A 167 REMARK 465 LEU A 168 REMARK 465 VAL A 169 REMARK 465 CYS A 170 REMARK 465 ALA A 171 REMARK 465 ASP A 172 REMARK 465 PRO A 173 REMARK 465 CYS A 174 REMARK 465 GLN A 175 REMARK 465 ALA A 176 REMARK 465 HIS A 177 REMARK 465 ARG A 178 REMARK 465 THR A 179 REMARK 465 LEU A 180 REMARK 465 ASP A 181 REMARK 465 GLU A 182 REMARK 465 TYR A 183 REMARK 465 TRP A 184 REMARK 465 ARG A 185 REMARK 465 SER A 186 REMARK 465 THR A 187 REMARK 465 GLU A 188 REMARK 465 TYR A 189 REMARK 465 GLY A 190 REMARK 465 GLU A 191 REMARK 465 GLY A 192 REMARK 465 TYR A 193 REMARK 465 ALA A 194 REMARK 465 CYS A 195 REMARK 465 ASP A 196 REMARK 465 THR A 197 REMARK 465 ASP A 198 REMARK 465 LEU A 199 REMARK 465 ARG A 200 REMARK 465 GLY A 201 REMARK 465 TRP A 202 REMARK 465 TYR A 203 REMARK 465 ARG A 204 REMARK 465 PHE A 205 REMARK 465 VAL A 206 REMARK 465 GLY A 207 REMARK 465 GLN A 208 REMARK 465 GLY A 209 REMARK 465 GLY A 210 REMARK 465 ALA A 211 REMARK 465 ARG A 212 REMARK 465 MET A 213 REMARK 465 ALA A 214 REMARK 465 GLU A 215 REMARK 465 THR A 216 REMARK 465 CYS A 217 REMARK 465 VAL A 218 REMARK 465 PRO A 219 REMARK 465 VAL A 220 REMARK 465 LEU A 221 REMARK 465 ARG A 222 REMARK 465 CYS A 223 REMARK 465 ASN A 224 REMARK 465 THR A 225 REMARK 465 ALA A 226 REMARK 465 ALA A 227 REMARK 465 PRO A 228 REMARK 465 MET A 229 REMARK 465 TRP A 230 REMARK 465 LEU A 231 REMARK 465 ASN A 232 REMARK 465 GLY A 233 REMARK 465 THR A 234 REMARK 465 HIS A 235 REMARK 465 PRO A 236 REMARK 465 SER A 237 REMARK 465 SER A 238 REMARK 465 ASP A 239 REMARK 465 GLU A 240 REMARK 465 GLY A 241 REMARK 465 ILE A 242 REMARK 465 VAL A 243 REMARK 465 SER A 244 REMARK 465 ARG A 245 REMARK 465 LYS A 246 REMARK 465 ALA A 247 REMARK 465 CYS A 248 REMARK 465 ALA A 249 REMARK 465 HIS A 250 REMARK 465 TRP A 251 REMARK 465 SER A 252 REMARK 465 GLY A 253 REMARK 465 HIS A 254 REMARK 465 CYS A 255 REMARK 465 CYS A 256 REMARK 465 LEU A 257 REMARK 465 TRP A 258 REMARK 465 ASP A 259 REMARK 465 ALA A 260 REMARK 465 SER A 261 REMARK 465 VAL A 262 REMARK 465 GLN A 263 REMARK 465 VAL A 264 REMARK 465 LYS A 265 REMARK 465 ALA A 266 REMARK 465 CYS A 267 REMARK 465 ALA A 268 REMARK 465 GLY A 269 REMARK 465 GLY A 270 REMARK 465 TYR A 271 REMARK 465 TYR A 272 REMARK 465 VAL A 273 REMARK 465 TYR A 274 REMARK 465 ASN A 275 REMARK 465 LEU A 276 REMARK 465 THR A 277 REMARK 465 ALA A 278 REMARK 465 PRO A 279 REMARK 465 PRO A 280 REMARK 465 GLU A 281 REMARK 465 CYS A 282 REMARK 465 HIS A 283 REMARK 465 LEU A 284 REMARK 465 ALA A 285 REMARK 465 TYR A 286 REMARK 465 CYS A 287 REMARK 465 THR A 288 REMARK 465 ASP A 289 REMARK 465 PRO A 290 REMARK 465 SER A 291 REMARK 465 SER A 292 REMARK 465 VAL A 293 REMARK 465 GLU A 294 REMARK 465 GLY A 295 REMARK 465 THR A 296 REMARK 465 CYS A 297 REMARK 465 GLU A 298 REMARK 465 GLU A 299 REMARK 465 CYS A 300 REMARK 465 SER A 301 REMARK 465 ILE A 302 REMARK 465 ASP A 303 REMARK 465 GLU A 304 REMARK 465 ASP A 305 REMARK 465 CYS A 306 REMARK 465 LYS A 307 REMARK 465 SER A 308 REMARK 465 ASN A 309 REMARK 465 ASN A 310 REMARK 465 GLY A 311 REMARK 465 ARG A 312 REMARK 465 TRP A 313 REMARK 465 HIS A 314 REMARK 465 CYS A 315 REMARK 465 GLN A 316 REMARK 465 CYS A 317 REMARK 465 LYS A 318 REMARK 465 GLN A 319 REMARK 465 ASP A 320 REMARK 465 PHE A 321 REMARK 465 ASN A 322 REMARK 465 ILE A 323 REMARK 465 THR A 324 REMARK 465 ASP A 325 REMARK 465 ILE A 326 REMARK 465 SER A 327 REMARK 465 THR A 585 REMARK 465 ARG A 586 REMARK 465 PHE A 587 REMARK 465 ARG A 588 REMARK 465 SER A 589 REMARK 465 GLY A 590 REMARK 465 SER A 591 REMARK 465 VAL A 592 REMARK 465 ILE A 593 REMARK 465 ASP A 594 REMARK 465 GLN A 595 REMARK 465 SER A 596 REMARK 465 ARG A 597 REMARK 465 VAL A 598 REMARK 465 LEU A 599 REMARK 465 ASN A 600 REMARK 465 LEU A 601 REMARK 465 GLY A 602 REMARK 465 PRO A 603 REMARK 465 ILE A 604 REMARK 465 THR A 605 REMARK 465 ARG A 606 REMARK 465 LYS A 607 REMARK 465 GLY A 608 REMARK 465 VAL A 609 REMARK 465 GLN A 610 REMARK 465 ALA A 611 REMARK 465 THR A 612 REMARK 465 VAL A 613 REMARK 465 SER A 614 REMARK 465 ARG A 615 REMARK 465 ALA A 616 REMARK 465 PHE A 617 REMARK 465 SER A 618 REMARK 465 SER A 619 REMARK 465 LEU A 620 REMARK 465 GLY A 621 REMARK 465 LEU A 622 REMARK 465 LEU A 623 REMARK 465 LYS A 624 REMARK 465 VAL A 625 REMARK 465 TRP A 626 REMARK 465 LEU A 627 REMARK 465 PRO A 628 REMARK 465 LEU A 629 REMARK 465 LEU A 630 REMARK 465 LEU A 631 REMARK 465 SER A 632 REMARK 465 ALA A 633 REMARK 465 THR A 634 REMARK 465 LEU A 635 REMARK 465 THR A 636 REMARK 465 LEU A 637 REMARK 465 THR A 638 REMARK 465 PHE A 639 REMARK 465 GLN A 640 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 468 CD1 TYR A 468 CE1 -0.094 REMARK 500 THR A 469 C GLN A 470 N -0.139 REMARK 500 CYS A 582 CB CYS A 582 SG -0.113 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 425 CA - CB - SG ANGL. DEV. = 9.1 DEGREES REMARK 500 TYR A 468 CB - CG - CD2 ANGL. DEV. = -3.8 DEGREES REMARK 500 TYR A 468 CB - CG - CD1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ASP A 572 CB - CG - OD1 ANGL. DEV. = 8.0 DEGREES REMARK 500 ASP A 572 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 475 6.80 -67.21 REMARK 500 SER A 476 141.84 -172.26 REMARK 500 PRO A 510 40.31 -92.48 REMARK 500 ARG A 526 16.64 55.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6SZ5 RELATED DB: PDB REMARK 900 RELATED ID: EMD-11388 RELATED DB: EMDB DBREF 6ZYA A 1 640 UNP P07911 UROM_HUMAN 1 640 SEQRES 1 A 640 MET GLY GLN PRO SER LEU THR TRP MET LEU MET VAL VAL SEQRES 2 A 640 VAL ALA SER TRP PHE ILE THR THR ALA ALA THR ASP THR SEQRES 3 A 640 SER GLU ALA ARG TRP CYS SER GLU CYS HIS SER ASN ALA SEQRES 4 A 640 THR CYS THR GLU ASP GLU ALA VAL THR THR CYS THR CYS SEQRES 5 A 640 GLN GLU GLY PHE THR GLY ASP GLY LEU THR CYS VAL ASP SEQRES 6 A 640 LEU ASP GLU CYS ALA ILE PRO GLY ALA HIS ASN CYS SER SEQRES 7 A 640 ALA ASN SER SER CYS VAL ASN THR PRO GLY SER PHE SER SEQRES 8 A 640 CYS VAL CYS PRO GLU GLY PHE ARG LEU SER PRO GLY LEU SEQRES 9 A 640 GLY CYS THR ASP VAL ASP GLU CYS ALA GLU PRO GLY LEU SEQRES 10 A 640 SER HIS CYS HIS ALA LEU ALA THR CYS VAL ASN VAL VAL SEQRES 11 A 640 GLY SER TYR LEU CYS VAL CYS PRO ALA GLY TYR ARG GLY SEQRES 12 A 640 ASP GLY TRP HIS CYS GLU CYS SER PRO GLY SER CYS GLY SEQRES 13 A 640 PRO GLY LEU ASP CYS VAL PRO GLU GLY ASP ALA LEU VAL SEQRES 14 A 640 CYS ALA ASP PRO CYS GLN ALA HIS ARG THR LEU ASP GLU SEQRES 15 A 640 TYR TRP ARG SER THR GLU TYR GLY GLU GLY TYR ALA CYS SEQRES 16 A 640 ASP THR ASP LEU ARG GLY TRP TYR ARG PHE VAL GLY GLN SEQRES 17 A 640 GLY GLY ALA ARG MET ALA GLU THR CYS VAL PRO VAL LEU SEQRES 18 A 640 ARG CYS ASN THR ALA ALA PRO MET TRP LEU ASN GLY THR SEQRES 19 A 640 HIS PRO SER SER ASP GLU GLY ILE VAL SER ARG LYS ALA SEQRES 20 A 640 CYS ALA HIS TRP SER GLY HIS CYS CYS LEU TRP ASP ALA SEQRES 21 A 640 SER VAL GLN VAL LYS ALA CYS ALA GLY GLY TYR TYR VAL SEQRES 22 A 640 TYR ASN LEU THR ALA PRO PRO GLU CYS HIS LEU ALA TYR SEQRES 23 A 640 CYS THR ASP PRO SER SER VAL GLU GLY THR CYS GLU GLU SEQRES 24 A 640 CYS SER ILE ASP GLU ASP CYS LYS SER ASN ASN GLY ARG SEQRES 25 A 640 TRP HIS CYS GLN CYS LYS GLN ASP PHE ASN ILE THR ASP SEQRES 26 A 640 ILE SER LEU LEU GLU HIS ARG LEU GLU CYS GLY ALA ASN SEQRES 27 A 640 ASP MET LYS VAL SER LEU GLY LYS CYS GLN LEU LYS SER SEQRES 28 A 640 LEU GLY PHE ASP LYS VAL PHE MET TYR LEU SER ASP SER SEQRES 29 A 640 ARG CYS SER GLY PHE ASN ASP ARG ASP ASN ARG ASP TRP SEQRES 30 A 640 VAL SER VAL VAL THR PRO ALA ARG ASP GLY PRO CYS GLY SEQRES 31 A 640 THR VAL LEU THR ARG ASN GLU THR HIS ALA THR TYR SER SEQRES 32 A 640 ASN THR LEU TYR LEU ALA ASP GLU ILE ILE ILE ARG ASP SEQRES 33 A 640 LEU ASN ILE LYS ILE ASN PHE ALA CYS SER TYR PRO LEU SEQRES 34 A 640 ASP MET LYS VAL SER LEU LYS THR ALA LEU GLN PRO MET SEQRES 35 A 640 VAL SER ALA LEU ASN ILE ARG VAL GLY GLY THR GLY MET SEQRES 36 A 640 PHE THR VAL ARG MET ALA LEU PHE GLN THR PRO SER TYR SEQRES 37 A 640 THR GLN PRO TYR GLN GLY SER SER VAL THR LEU SER THR SEQRES 38 A 640 GLU ALA PHE LEU TYR VAL GLY THR MET LEU ASP GLY GLY SEQRES 39 A 640 ASP LEU SER ARG PHE ALA LEU LEU MET THR ASN CYS TYR SEQRES 40 A 640 ALA THR PRO SER SER ASN ALA THR ASP PRO LEU LYS TYR SEQRES 41 A 640 PHE ILE ILE GLN ASP ARG CYS PRO HIS THR ARG ASP SER SEQRES 42 A 640 THR ILE GLN VAL VAL GLU ASN GLY GLU SER SER GLN GLY SEQRES 43 A 640 ARG PHE SER VAL GLN MET PHE ARG PHE ALA GLY ASN TYR SEQRES 44 A 640 ASP LEU VAL TYR LEU HIS CYS GLU VAL TYR LEU CYS ASP SEQRES 45 A 640 THR MET ASN GLU LYS CYS LYS PRO THR CYS SER GLY THR SEQRES 46 A 640 ARG PHE ARG SER GLY SER VAL ILE ASP GLN SER ARG VAL SEQRES 47 A 640 LEU ASN LEU GLY PRO ILE THR ARG LYS GLY VAL GLN ALA SEQRES 48 A 640 THR VAL SER ARG ALA PHE SER SER LEU GLY LEU LEU LYS SEQRES 49 A 640 VAL TRP LEU PRO LEU LEU LEU SER ALA THR LEU THR LEU SEQRES 50 A 640 THR PHE GLN HET NAG B 1 14 HET NAG B 2 14 HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET MAN C 5 11 HET MAN C 6 11 HET MAN C 7 11 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 2 NAG 4(C8 H15 N O6) FORMUL 3 BMA C6 H12 O6 FORMUL 3 MAN 4(C6 H12 O6) HELIX 1 AA1 GLY A 345 PHE A 354 5 10 SHEET 1 AA1 4 ARG A 332 CYS A 335 0 SHEET 2 AA1 4 ASP A 339 LEU A 344 -1 O LYS A 341 N GLU A 334 SHEET 3 AA1 4 TRP A 377 PRO A 383 -1 O VAL A 378 N LEU A 344 SHEET 4 AA1 4 PHE A 369 ASP A 371 -1 N ASP A 371 O TRP A 377 SHEET 1 AA2 3 PHE A 358 TYR A 360 0 SHEET 2 AA2 3 HIS A 399 ALA A 409 -1 O ALA A 409 N PHE A 358 SHEET 3 AA2 3 VAL A 392 ARG A 395 -1 N THR A 394 O THR A 401 SHEET 1 AA3 3 PHE A 358 TYR A 360 0 SHEET 2 AA3 3 HIS A 399 ALA A 409 -1 O ALA A 409 N PHE A 358 SHEET 3 AA3 3 ILE A 419 PRO A 428 -1 O CYS A 425 N TYR A 402 SHEET 1 AA4 4 VAL A 458 PHE A 463 0 SHEET 2 AA4 4 PHE A 484 LEU A 491 -1 O MET A 490 N ARG A 459 SHEET 3 AA4 4 GLN A 545 GLN A 551 -1 O PHE A 548 N VAL A 487 SHEET 4 AA4 4 ILE A 535 GLU A 539 -1 N GLN A 536 O SER A 549 SHEET 1 AA5 3 TYR A 520 ILE A 523 0 SHEET 2 AA5 3 PHE A 499 THR A 509 -1 N CYS A 506 O ILE A 523 SHEET 3 AA5 3 TYR A 563 ASP A 572 -1 O GLU A 567 N ASN A 505 SSBOND 1 CYS A 335 CYS A 425 1555 1555 2.06 SSBOND 2 CYS A 366 CYS A 389 1555 1555 2.05 SSBOND 3 CYS A 506 CYS A 566 1555 1555 2.05 SSBOND 4 CYS A 527 CYS A 582 1555 1555 1.85 SSBOND 5 CYS A 571 CYS A 578 1555 1555 2.03 LINK ND2 ASN A 396 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN A 513 C1 NAG B 1 1555 1555 1.43 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.46 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.47 LINK O3 BMA C 3 C1 MAN C 4 1555 1555 1.45 LINK O6 BMA C 3 C1 MAN C 6 1555 1555 1.45 LINK O6 MAN C 4 C1 MAN C 5 1555 1555 1.45 LINK O6 MAN C 6 C1 MAN C 7 1555 1555 1.45 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000