HEADER ANTIMICROBIAL PROTEIN 02-AUG-20 6ZYQ TITLE STRUCTURE OF NDM-1 WITH 2-MERCAPTOMETHYL-THIAZOLIDINE D-SYN-1B COMPND MOL_ID: 1; COMPND 2 MOLECULE: METALLO-BETA-LACTAMASE TYPE 2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: B2 METALLO-BETA-LACTAMASE,BETA-LACTAMASE TYPE II,METALLO- COMPND 5 BETA-LACTAMASE NDM-1,METALLO-BETA-LACTAMASE TYPE II,NEW DELHI COMPND 6 METALLO-BETA-LACTAMASE-1,NDM-1; COMPND 7 EC: 3.5.2.6; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 573; SOURCE 4 GENE: BLANDM-1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS ANTIBIOTIC RESISTANCE, LACTAMASE, ZINC, INHIBITOR, ANTIMICROBIAL KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.HINCHLIFFE,J.SPENCER REVDAT 3 31-JAN-24 6ZYQ 1 REMARK REVDAT 2 07-JUL-21 6ZYQ 1 JRNL REVDAT 1 20-JAN-21 6ZYQ 0 JRNL AUTH M.A.ROSSI,V.MARTINEZ,P.HINCHLIFFE,M.F.MOJICA,V.CASTILLO, JRNL AUTH 2 D.M.MORENO,R.SMITH,B.SPELLBERG,G.L.DRUSANO,C.BANCHIO, JRNL AUTH 3 R.A.BONOMO,J.SPENCER,A.J.VILA,G.MAHLER JRNL TITL 2-MERCAPTOMETHYL-THIAZOLIDINES USE CONSERVED AROMATIC-S JRNL TITL 2 INTERACTIONS TO ACHIEVE BROAD-RANGE INHIBITION OF JRNL TITL 3 METALLO-BETA-LACTAMASES. JRNL REF CHEM SCI V. 12 2898 2021 JRNL REFN ISSN 2041-6520 JRNL PMID 34164056 JRNL DOI 10.1039/D0SC05172A REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.72 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 44721 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.810 REMARK 3 FREE R VALUE TEST SET COUNT : 2151 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.7200 - 4.1909 1.00 3066 132 0.1828 0.1858 REMARK 3 2 4.1909 - 3.3270 1.00 2908 157 0.1562 0.2002 REMARK 3 3 3.3270 - 2.9066 1.00 2820 195 0.1679 0.1691 REMARK 3 4 2.9066 - 2.6409 1.00 2888 130 0.1699 0.1829 REMARK 3 5 2.6409 - 2.4517 1.00 2808 181 0.1660 0.1718 REMARK 3 6 2.4517 - 2.3072 1.00 2890 108 0.1683 0.2298 REMARK 3 7 2.3072 - 2.1916 1.00 2832 142 0.1686 0.2028 REMARK 3 8 2.1916 - 2.0962 1.00 2830 129 0.1692 0.1977 REMARK 3 9 2.0962 - 2.0155 1.00 2837 148 0.1766 0.1980 REMARK 3 10 2.0155 - 1.9460 1.00 2804 140 0.1817 0.2183 REMARK 3 11 1.9460 - 1.8851 1.00 2812 151 0.1922 0.2161 REMARK 3 12 1.8851 - 1.8313 1.00 2834 144 0.2077 0.2535 REMARK 3 13 1.8313 - 1.7830 1.00 2829 123 0.2438 0.2860 REMARK 3 14 1.7830 - 1.7395 0.99 2817 135 0.2748 0.2896 REMARK 3 15 1.7395 - 1.7000 0.93 2595 136 0.3064 0.3522 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.160 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3624 REMARK 3 ANGLE : 0.988 4946 REMARK 3 CHIRALITY : 0.075 550 REMARK 3 PLANARITY : 0.006 651 REMARK 3 DIHEDRAL : 14.877 1256 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 31 THROUGH 43 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.8578 -11.7285 26.1738 REMARK 3 T TENSOR REMARK 3 T11: 0.7428 T22: 0.8181 REMARK 3 T33: 0.7262 T12: 0.0247 REMARK 3 T13: -0.0807 T23: -0.0073 REMARK 3 L TENSOR REMARK 3 L11: 1.5952 L22: 1.1093 REMARK 3 L33: 0.0339 L12: 0.5363 REMARK 3 L13: 0.2020 L23: -0.0165 REMARK 3 S TENSOR REMARK 3 S11: -0.0419 S12: -0.4956 S13: 0.0056 REMARK 3 S21: 0.3610 S22: 0.1266 S23: -0.7402 REMARK 3 S31: -0.0780 S32: 0.7098 S33: -0.0967 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 44 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.3155 -13.6926 21.1358 REMARK 3 T TENSOR REMARK 3 T11: 0.2308 T22: 0.2014 REMARK 3 T33: 0.1865 T12: -0.0096 REMARK 3 T13: 0.0081 T23: 0.0528 REMARK 3 L TENSOR REMARK 3 L11: 3.2894 L22: 3.8965 REMARK 3 L33: 4.8295 L12: -1.0251 REMARK 3 L13: -1.5109 L23: 1.5085 REMARK 3 S TENSOR REMARK 3 S11: 0.0089 S12: -0.0079 S13: -0.0555 REMARK 3 S21: 0.2275 S22: 0.0379 S23: -0.2188 REMARK 3 S31: 0.3413 S32: 0.2639 S33: -0.0502 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 58 THROUGH 70 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.8099 -7.3894 18.0699 REMARK 3 T TENSOR REMARK 3 T11: 0.1857 T22: 0.2808 REMARK 3 T33: 0.2542 T12: 0.0003 REMARK 3 T13: 0.0044 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 4.7559 L22: 2.3456 REMARK 3 L33: 3.2188 L12: -0.7859 REMARK 3 L13: -0.7978 L23: -0.1042 REMARK 3 S TENSOR REMARK 3 S11: 0.1434 S12: -0.0812 S13: 0.2545 REMARK 3 S21: 0.0292 S22: -0.0825 S23: -0.4891 REMARK 3 S31: -0.0550 S32: 0.6490 S33: -0.0630 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 71 THROUGH 212 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.3068 0.9126 13.1563 REMARK 3 T TENSOR REMARK 3 T11: 0.1487 T22: 0.1891 REMARK 3 T33: 0.1478 T12: -0.0142 REMARK 3 T13: -0.0016 T23: 0.0107 REMARK 3 L TENSOR REMARK 3 L11: 0.7990 L22: 1.9556 REMARK 3 L33: 0.9534 L12: 0.1084 REMARK 3 L13: -0.3392 L23: 0.1919 REMARK 3 S TENSOR REMARK 3 S11: -0.0272 S12: 0.0229 S13: 0.0124 REMARK 3 S21: -0.1298 S22: 0.0400 S23: 0.0054 REMARK 3 S31: -0.0199 S32: 0.0206 S33: -0.0115 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 213 THROUGH 228 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.0329 10.8305 23.8532 REMARK 3 T TENSOR REMARK 3 T11: 0.2929 T22: 0.3720 REMARK 3 T33: 0.2603 T12: -0.0387 REMARK 3 T13: -0.0157 T23: 0.0175 REMARK 3 L TENSOR REMARK 3 L11: 1.2749 L22: 2.0537 REMARK 3 L33: 3.2136 L12: -0.7469 REMARK 3 L13: 0.2664 L23: -2.2476 REMARK 3 S TENSOR REMARK 3 S11: -0.0996 S12: 0.1494 S13: 0.1535 REMARK 3 S21: -0.0314 S22: -0.1148 S23: -0.3990 REMARK 3 S31: 0.0854 S32: 0.4446 S33: 0.2367 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 229 THROUGH 270 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.6019 8.3311 29.2822 REMARK 3 T TENSOR REMARK 3 T11: 0.2018 T22: 0.2164 REMARK 3 T33: 0.1401 T12: 0.0000 REMARK 3 T13: -0.0062 T23: 0.0027 REMARK 3 L TENSOR REMARK 3 L11: 0.7984 L22: 2.2522 REMARK 3 L33: 1.9739 L12: -0.1871 REMARK 3 L13: 0.0571 L23: -0.1648 REMARK 3 S TENSOR REMARK 3 S11: -0.0061 S12: -0.0807 S13: -0.0489 REMARK 3 S21: 0.2836 S22: 0.0373 S23: -0.0170 REMARK 3 S31: -0.0945 S32: 0.1468 S33: -0.0437 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 43 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.4627 48.5230 1.8775 REMARK 3 T TENSOR REMARK 3 T11: 0.3938 T22: 0.2374 REMARK 3 T33: 0.3296 T12: -0.0352 REMARK 3 T13: 0.0628 T23: -0.0263 REMARK 3 L TENSOR REMARK 3 L11: 0.5701 L22: 2.9989 REMARK 3 L33: 5.3824 L12: -0.5630 REMARK 3 L13: -1.4606 L23: 2.0345 REMARK 3 S TENSOR REMARK 3 S11: 0.3873 S12: 0.1952 S13: 0.2704 REMARK 3 S21: -0.4636 S22: 0.0931 S23: -0.2124 REMARK 3 S31: -0.3081 S32: 0.3004 S33: -0.3927 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 58 THROUGH 70 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.8431 42.4550 9.4632 REMARK 3 T TENSOR REMARK 3 T11: 0.3141 T22: 0.2968 REMARK 3 T33: 0.4810 T12: -0.0182 REMARK 3 T13: 0.0621 T23: -0.0230 REMARK 3 L TENSOR REMARK 3 L11: 2.7329 L22: 3.0552 REMARK 3 L33: 2.5977 L12: 0.2171 REMARK 3 L13: -0.5159 L23: 0.5453 REMARK 3 S TENSOR REMARK 3 S11: -0.0153 S12: -0.2433 S13: 0.0281 REMARK 3 S21: 0.1382 S22: 0.0283 S23: -0.5112 REMARK 3 S31: -0.0837 S32: 0.5428 S33: 0.0166 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 71 THROUGH 118 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.1579 42.7270 6.6392 REMARK 3 T TENSOR REMARK 3 T11: 0.2277 T22: 0.1776 REMARK 3 T33: 0.3023 T12: -0.0007 REMARK 3 T13: -0.0346 T23: -0.0143 REMARK 3 L TENSOR REMARK 3 L11: 1.2820 L22: 2.5550 REMARK 3 L33: 1.6086 L12: -0.1056 REMARK 3 L13: -0.1339 L23: -0.0770 REMARK 3 S TENSOR REMARK 3 S11: 0.0518 S12: 0.2039 S13: 0.1549 REMARK 3 S21: -0.1971 S22: -0.0614 S23: 0.2829 REMARK 3 S31: -0.1869 S32: 0.0479 S33: 0.0092 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 119 THROUGH 209 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.2807 28.2845 8.1764 REMARK 3 T TENSOR REMARK 3 T11: 0.2324 T22: 0.1710 REMARK 3 T33: 0.2136 T12: 0.0121 REMARK 3 T13: 0.0288 T23: -0.0019 REMARK 3 L TENSOR REMARK 3 L11: 1.1334 L22: 2.8355 REMARK 3 L33: 0.7692 L12: 0.2217 REMARK 3 L13: -0.4153 L23: 0.0637 REMARK 3 S TENSOR REMARK 3 S11: 0.0915 S12: 0.0858 S13: 0.0415 REMARK 3 S21: -0.0548 S22: -0.0606 S23: 0.2061 REMARK 3 S31: -0.0200 S32: 0.0164 S33: -0.0397 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 210 THROUGH 228 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.9787 26.3386 6.9558 REMARK 3 T TENSOR REMARK 3 T11: 0.3819 T22: 0.4130 REMARK 3 T33: 0.4988 T12: -0.1015 REMARK 3 T13: 0.0102 T23: -0.0725 REMARK 3 L TENSOR REMARK 3 L11: 1.3299 L22: 2.8767 REMARK 3 L33: 2.2205 L12: 0.9926 REMARK 3 L13: -0.0849 L23: -1.1761 REMARK 3 S TENSOR REMARK 3 S11: 0.3275 S12: -0.2681 S13: -0.1510 REMARK 3 S21: 0.5713 S22: -0.3621 S23: -0.7186 REMARK 3 S31: -0.2305 S32: 0.2978 S33: 0.0365 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 229 THROUGH 270 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.8409 27.0612 -1.9201 REMARK 3 T TENSOR REMARK 3 T11: 0.2889 T22: 0.2889 REMARK 3 T33: 0.3187 T12: -0.0460 REMARK 3 T13: 0.0601 T23: -0.0094 REMARK 3 L TENSOR REMARK 3 L11: 1.8485 L22: 2.3626 REMARK 3 L33: 1.4852 L12: 0.4453 REMARK 3 L13: -0.3691 L23: 0.2745 REMARK 3 S TENSOR REMARK 3 S11: 0.0323 S12: 0.0329 S13: -0.0751 REMARK 3 S21: -0.2364 S22: 0.0190 S23: -0.1570 REMARK 3 S31: -0.0487 S32: 0.2353 S33: -0.0311 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 43 THROUGH 116 OR REMARK 3 RESID 118 THROUGH 270)) REMARK 3 SELECTION : (CHAIN B AND (RESID 43 THROUGH 116 OR REMARK 3 RESID 118 THROUGH 270)) REMARK 3 ATOM PAIRS NUMBER : 2052 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ZYQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1292110552. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97629 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44786 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 38.720 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 12.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6RMF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS PH 5.8, 32% PEG 3350, REMARK 280 0.15M NH4SO4, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.09000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.72000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.92000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 38.72000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.09000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.92000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 27 REMARK 465 SER A 28 REMARK 465 GLY A 29 REMARK 465 GLU A 30 REMARK 465 GLY B 27 REMARK 465 SER B 28 REMARK 465 GLY B 29 REMARK 465 GLU B 30 REMARK 465 ILE B 31 REMARK 465 ARG B 32 REMARK 465 PRO B 33 REMARK 465 THR B 34 REMARK 465 ILE B 35 REMARK 465 GLY B 36 REMARK 465 GLN B 37 REMARK 465 GLN B 38 REMARK 465 MET B 39 REMARK 465 GLU B 40 REMARK 465 THR B 41 REMARK 465 GLY B 42 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 535 O HOH A 555 1.90 REMARK 500 O HOH A 505 O HOH A 549 1.91 REMARK 500 O ARG B 270 O HOH B 401 2.01 REMARK 500 O HOH B 499 O HOH B 503 2.03 REMARK 500 NE2 GLN B 151 O HOH B 402 2.03 REMARK 500 O HOH A 555 O HOH B 529 2.05 REMARK 500 O HOH A 451 O HOH A 502 2.10 REMARK 500 O HOH A 535 O HOH B 529 2.11 REMARK 500 O HOH A 506 O HOH A 548 2.13 REMARK 500 O ASP B 66 O HOH B 403 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 505 O HOH A 517 2554 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 90 143.01 75.78 REMARK 500 ASP B 90 140.29 75.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 120 NE2 REMARK 620 2 HIS A 122 ND1 100.1 REMARK 620 3 HIS A 189 NE2 103.4 111.8 REMARK 620 4 QST A 305 S01 132.7 112.6 95.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 124 OD2 REMARK 620 2 CYS A 208 SG 110.3 REMARK 620 3 HIS A 250 NE2 93.4 108.3 REMARK 620 4 QST A 305 S01 116.8 108.5 118.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 120 NE2 REMARK 620 2 HIS B 122 ND1 100.5 REMARK 620 3 HIS B 189 NE2 108.1 116.1 REMARK 620 4 QST B 303 S01 129.6 108.4 95.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 124 OD2 REMARK 620 2 CYS B 208 SG 115.0 REMARK 620 3 HIS B 250 NE2 90.5 108.8 REMARK 620 4 QST B 303 S01 112.8 110.6 117.9 REMARK 620 N 1 2 3 DBREF 6ZYQ A 29 270 UNP C7C422 BLAN1_KLEPN 29 270 DBREF 6ZYQ B 29 270 UNP C7C422 BLAN1_KLEPN 29 270 SEQADV 6ZYQ GLY A 27 UNP C7C422 EXPRESSION TAG SEQADV 6ZYQ SER A 28 UNP C7C422 EXPRESSION TAG SEQADV 6ZYQ GLY B 27 UNP C7C422 EXPRESSION TAG SEQADV 6ZYQ SER B 28 UNP C7C422 EXPRESSION TAG SEQRES 1 A 244 GLY SER GLY GLU ILE ARG PRO THR ILE GLY GLN GLN MET SEQRES 2 A 244 GLU THR GLY ASP GLN ARG PHE GLY ASP LEU VAL PHE ARG SEQRES 3 A 244 GLN LEU ALA PRO ASN VAL TRP GLN HIS THR SER TYR LEU SEQRES 4 A 244 ASP MET PRO GLY PHE GLY ALA VAL ALA SER ASN GLY LEU SEQRES 5 A 244 ILE VAL ARG ASP GLY GLY ARG VAL LEU VAL VAL ASP THR SEQRES 6 A 244 ALA TRP THR ASP ASP GLN THR ALA GLN ILE LEU ASN TRP SEQRES 7 A 244 ILE LYS GLN GLU ILE ASN LEU PRO VAL ALA LEU ALA VAL SEQRES 8 A 244 VAL THR HIS ALA HIS GLN ASP LYS MET GLY GLY MET ASP SEQRES 9 A 244 ALA LEU HIS ALA ALA GLY ILE ALA THR TYR ALA ASN ALA SEQRES 10 A 244 LEU SER ASN GLN LEU ALA PRO GLN GLU GLY MET VAL ALA SEQRES 11 A 244 ALA GLN HIS SER LEU THR PHE ALA ALA ASN GLY TRP VAL SEQRES 12 A 244 GLU PRO ALA THR ALA PRO ASN PHE GLY PRO LEU LYS VAL SEQRES 13 A 244 PHE TYR PRO GLY PRO GLY HIS THR SER ASP ASN ILE THR SEQRES 14 A 244 VAL GLY ILE ASP GLY THR ASP ILE ALA PHE GLY GLY CYS SEQRES 15 A 244 LEU ILE LYS ASP SER LYS ALA LYS SER LEU GLY ASN LEU SEQRES 16 A 244 GLY ASP ALA ASP THR GLU HIS TYR ALA ALA SER ALA ARG SEQRES 17 A 244 ALA PHE GLY ALA ALA PHE PRO LYS ALA SER MET ILE VAL SEQRES 18 A 244 MET SER HIS SER ALA PRO ASP SER ARG ALA ALA ILE THR SEQRES 19 A 244 HIS THR ALA ARG MET ALA ASP LYS LEU ARG SEQRES 1 B 244 GLY SER GLY GLU ILE ARG PRO THR ILE GLY GLN GLN MET SEQRES 2 B 244 GLU THR GLY ASP GLN ARG PHE GLY ASP LEU VAL PHE ARG SEQRES 3 B 244 GLN LEU ALA PRO ASN VAL TRP GLN HIS THR SER TYR LEU SEQRES 4 B 244 ASP MET PRO GLY PHE GLY ALA VAL ALA SER ASN GLY LEU SEQRES 5 B 244 ILE VAL ARG ASP GLY GLY ARG VAL LEU VAL VAL ASP THR SEQRES 6 B 244 ALA TRP THR ASP ASP GLN THR ALA GLN ILE LEU ASN TRP SEQRES 7 B 244 ILE LYS GLN GLU ILE ASN LEU PRO VAL ALA LEU ALA VAL SEQRES 8 B 244 VAL THR HIS ALA HIS GLN ASP LYS MET GLY GLY MET ASP SEQRES 9 B 244 ALA LEU HIS ALA ALA GLY ILE ALA THR TYR ALA ASN ALA SEQRES 10 B 244 LEU SER ASN GLN LEU ALA PRO GLN GLU GLY MET VAL ALA SEQRES 11 B 244 ALA GLN HIS SER LEU THR PHE ALA ALA ASN GLY TRP VAL SEQRES 12 B 244 GLU PRO ALA THR ALA PRO ASN PHE GLY PRO LEU LYS VAL SEQRES 13 B 244 PHE TYR PRO GLY PRO GLY HIS THR SER ASP ASN ILE THR SEQRES 14 B 244 VAL GLY ILE ASP GLY THR ASP ILE ALA PHE GLY GLY CYS SEQRES 15 B 244 LEU ILE LYS ASP SER LYS ALA LYS SER LEU GLY ASN LEU SEQRES 16 B 244 GLY ASP ALA ASP THR GLU HIS TYR ALA ALA SER ALA ARG SEQRES 17 B 244 ALA PHE GLY ALA ALA PHE PRO LYS ALA SER MET ILE VAL SEQRES 18 B 244 MET SER HIS SER ALA PRO ASP SER ARG ALA ALA ILE THR SEQRES 19 B 244 HIS THR ALA ARG MET ALA ASP LYS LEU ARG HET ZN A 301 1 HET ZN A 302 1 HET SO4 A 303 5 HET SO4 A 304 5 HET QST A 305 17 HET ZN B 301 1 HET ZN B 302 1 HET QST B 303 17 HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETNAM QST (2~{S},4~{S})-2-ETHOXYCARBONYL-5,5-DIMETHYL-2- HETNAM 2 QST (SULFANYLMETHYL)-1,3-THIAZOLIDINE-4-CARBOXYLIC ACID FORMUL 3 ZN 4(ZN 2+) FORMUL 5 SO4 2(O4 S 2-) FORMUL 7 QST 2(C10 H17 N O4 S2) FORMUL 11 HOH *294(H2 O) HELIX 1 AA1 THR A 94 ILE A 109 1 16 HELIX 2 AA2 HIS A 122 GLY A 127 1 6 HELIX 3 AA3 GLY A 128 ALA A 135 1 8 HELIX 4 AA4 ALA A 143 ALA A 149 1 7 HELIX 5 AA5 GLU A 170 ALA A 174 5 5 HELIX 6 AA6 HIS A 228 PHE A 240 1 13 HELIX 7 AA7 ARG A 256 LYS A 268 1 13 HELIX 8 AA8 THR B 94 ILE B 109 1 16 HELIX 9 AA9 HIS B 122 GLY B 127 1 6 HELIX 10 AB1 GLY B 128 ALA B 135 1 8 HELIX 11 AB2 ALA B 143 ALA B 149 1 7 HELIX 12 AB3 GLU B 170 ALA B 174 5 5 HELIX 13 AB4 CYS B 208 ILE B 210 5 3 HELIX 14 AB5 HIS B 228 PHE B 240 1 13 HELIX 15 AB6 ARG B 256 LYS B 268 1 13 SHEET 1 AA1 8 GLN A 44 PHE A 46 0 SHEET 2 AA1 8 LEU A 49 ALA A 55 -1 O PHE A 51 N GLN A 44 SHEET 3 AA1 8 VAL A 58 MET A 67 -1 O GLN A 60 N ARG A 52 SHEET 4 AA1 8 GLY A 71 ASP A 82 -1 O ILE A 79 N TRP A 59 SHEET 5 AA1 8 ARG A 85 VAL A 89 -1 O VAL A 89 N LEU A 78 SHEET 6 AA1 8 VAL A 113 VAL A 117 1 O ALA A 114 N VAL A 86 SHEET 7 AA1 8 ALA A 138 ASN A 142 1 O TYR A 140 N ALA A 116 SHEET 8 AA1 8 HIS A 159 LEU A 161 1 O LEU A 161 N ALA A 141 SHEET 1 AA2 4 LEU A 180 PHE A 183 0 SHEET 2 AA2 4 THR A 195 ILE A 198 -1 O THR A 195 N PHE A 183 SHEET 3 AA2 4 ILE A 203 GLY A 207 -1 O PHE A 205 N VAL A 196 SHEET 4 AA2 4 MET A 245 MET A 248 1 O VAL A 247 N GLY A 206 SHEET 1 AA3 8 GLN B 44 PHE B 46 0 SHEET 2 AA3 8 LEU B 49 ALA B 55 -1 O PHE B 51 N GLN B 44 SHEET 3 AA3 8 VAL B 58 MET B 67 -1 O GLN B 60 N ARG B 52 SHEET 4 AA3 8 GLY B 71 ASP B 82 -1 O ILE B 79 N TRP B 59 SHEET 5 AA3 8 ARG B 85 VAL B 89 -1 O ARG B 85 N ASP B 82 SHEET 6 AA3 8 VAL B 113 VAL B 118 1 O VAL B 117 N VAL B 88 SHEET 7 AA3 8 ALA B 138 ASN B 142 1 O TYR B 140 N VAL B 118 SHEET 8 AA3 8 HIS B 159 LEU B 161 1 O LEU B 161 N ALA B 141 SHEET 1 AA4 4 LEU B 180 PHE B 183 0 SHEET 2 AA4 4 THR B 195 ILE B 198 -1 O GLY B 197 N LYS B 181 SHEET 3 AA4 4 ILE B 203 GLY B 207 -1 O PHE B 205 N VAL B 196 SHEET 4 AA4 4 MET B 245 MET B 248 1 O VAL B 247 N GLY B 206 LINK NE2 HIS A 120 ZN ZN A 302 1555 1555 2.07 LINK ND1 HIS A 122 ZN ZN A 302 1555 1555 2.08 LINK OD2 ASP A 124 ZN ZN A 301 1555 1555 1.94 LINK NE2 HIS A 189 ZN ZN A 302 1555 1555 2.04 LINK SG CYS A 208 ZN ZN A 301 1555 1555 2.28 LINK NE2 HIS A 250 ZN ZN A 301 1555 1555 2.05 LINK ZN ZN A 301 S01 QST A 305 1555 1555 2.32 LINK ZN ZN A 302 S01 QST A 305 1555 1555 2.24 LINK NE2 HIS B 120 ZN ZN B 301 1555 1555 2.05 LINK ND1 HIS B 122 ZN ZN B 301 1555 1555 1.86 LINK OD2 ASP B 124 ZN ZN B 302 1555 1555 2.06 LINK NE2 HIS B 189 ZN ZN B 301 1555 1555 2.07 LINK SG CYS B 208 ZN ZN B 302 1555 1555 2.20 LINK NE2 HIS B 250 ZN ZN B 302 1555 1555 2.04 LINK ZN ZN B 301 S01 QST B 303 1555 1555 2.30 LINK ZN ZN B 302 S01 QST B 303 1555 1555 2.32 CRYST1 70.180 73.840 77.440 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014249 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013543 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012913 0.00000