HEADER TRANSFERASE 04-AUG-20 6ZZK TITLE CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF C. GLUTAMICUM ACEF (E2P) TITLE 2 IN TERNARY COMPLEX WITH COA AND DIHYDROLIPOAMIDE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROLIPOYLLYSINE-RESIDUE ACETYLTRANSFERASE COMPONENT OF COMPND 3 PYRUVATE DEHYDROGENASE COMPLEX; COMPND 4 CHAIN: A, B; COMPND 5 SYNONYM: DIHYDROLIPOAMIDE ACETYLTRANSFERASE COMPONENT OF PYRUVATE COMPND 6 DEHYDROGENASE COMPLEX,PYRUVATE DEHYDROGENASE COMPLEX COMPONENT E2,PDH COMPND 7 COMPONENT E2; COMPND 8 EC: 2.3.1.12; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CORYNEBACTERIUM GLUTAMICUM ATCC 13032; SOURCE 3 ORGANISM_TAXID: 196627; SOURCE 4 GENE: ACEF, SUCB, CGL2207, CG2421; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PDH, ODH, ACETYLTRANSFERASE, LIPOAMIDE, CORYNEBACTERIUM, COA, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR E.M.BRUCH,M.BELLINZONI REVDAT 4 31-JAN-24 6ZZK 1 REMARK REVDAT 3 15-DEC-21 6ZZK 1 TITLE REVDAT 2 08-DEC-21 6ZZK 1 JRNL REVDAT 1 18-AUG-21 6ZZK 0 JRNL AUTH E.M.BRUCH,P.VILELA,L.YANG,A.BOYKO,N.LEXA-SAPART,B.RAYNAL, JRNL AUTH 2 P.M.ALZARI,M.BELLINZONI JRNL TITL ACTINOBACTERIA CHALLENGE THE PARADIGM: A UNIQUE PROTEIN JRNL TITL 2 ARCHITECTURE FOR A WELL-KNOWN, CENTRAL METABOLIC COMPLEX. JRNL REF PROC.NATL.ACAD.SCI.USA V. 118 2021 JRNL REFN ESSN 1091-6490 JRNL PMID 34819376 JRNL DOI 10.1073/PNAS.2112107118 REMARK 2 REMARK 2 RESOLUTION. 2.09 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.09 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 93.43 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 45719 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.172 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2323 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.09 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.10 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1910 REMARK 3 BIN FREE R VALUE : 0.2112 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 61 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3659 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 108 REMARK 3 SOLVENT ATOMS : 320 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.220 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.132 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.109 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.128 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.107 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3834 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5228 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1365 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 668 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3834 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 545 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3161 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 0.91 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.38 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 13.30 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|436 - A|675 } REMARK 3 ORIGIN FOR THE GROUP (A): -46.2382 2.8656 0.2118 REMARK 3 T TENSOR REMARK 3 T11: -0.0874 T22: -0.0353 REMARK 3 T33: -0.0608 T12: -0.0068 REMARK 3 T13: 0.0109 T23: 0.0279 REMARK 3 L TENSOR REMARK 3 L11: 0.5439 L22: 1.2475 REMARK 3 L33: 1.1107 L12: 0.1634 REMARK 3 L13: 0.0243 L23: -0.3251 REMARK 3 S TENSOR REMARK 3 S11: 0.0314 S12: -0.0129 S13: -0.0955 REMARK 3 S21: -0.0129 S22: -0.0615 S23: 0.2583 REMARK 3 S31: -0.0955 S32: 0.2583 S33: 0.0301 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|435 - B|675 } REMARK 3 ORIGIN FOR THE GROUP (A): -50.8594 26.6705 -29.2926 REMARK 3 T TENSOR REMARK 3 T11: -0.0554 T22: -0.0651 REMARK 3 T33: -0.0469 T12: -0.0343 REMARK 3 T13: -0.01 T23: -0.0046 REMARK 3 L TENSOR REMARK 3 L11: 0.821 L22: 0.843 REMARK 3 L33: 0.9491 L12: -0.0035 REMARK 3 L13: -0.1283 L23: -0.1308 REMARK 3 S TENSOR REMARK 3 S11: -0.0287 S12: -0.0349 S13: 0.1897 REMARK 3 S21: -0.0349 S22: 0.0365 S23: -0.1424 REMARK 3 S31: 0.1897 S32: -0.1424 S33: -0.0078 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { A|701 - A|702 B|701 - B|701 } REMARK 3 ORIGIN FOR THE GROUP (A): -48.2439 15.9966 -13.2605 REMARK 3 T TENSOR REMARK 3 T11: -0.108 T22: -0.0295 REMARK 3 T33: -0.0148 T12: 0.0764 REMARK 3 T13: 0.0296 T23: -0.0734 REMARK 3 L TENSOR REMARK 3 L11: 0.5891 L22: 1.4438 REMARK 3 L33: 0.0045 L12: 0.5421 REMARK 3 L13: -0.3399 L23: -0.6782 REMARK 3 S TENSOR REMARK 3 S11: -0.0047 S12: 0.0079 S13: -0.1703 REMARK 3 S21: 0.0079 S22: 0.0023 S23: -0.0183 REMARK 3 S31: -0.1703 S32: -0.0183 S33: 0.0024 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ZZK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1292110507. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-FEB-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5498 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC, XDS NOV 1, 2016 REMARK 200 DATA SCALING SOFTWARE : AUTOPROC 1.0.5, AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45719 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.090 REMARK 200 RESOLUTION RANGE LOW (A) : 93.430 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 19.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.09 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.13 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 19.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6ZZJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL PH 7.3, 1.62 M TRI REMARK 280 -SODIUM CITRATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 66.06350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.06350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 66.06350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.06350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 66.06350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 66.06350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 66.06350 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 66.06350 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 66.06350 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 66.06350 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 66.06350 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 66.06350 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 66.06350 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 66.06350 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 66.06350 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 66.06350 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 66.06350 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 66.06350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 -66.06350 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 -66.06350 REMARK 350 BIOMT3 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 -66.06350 REMARK 350 BIOMT2 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 66.06350 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 -1.000000 -66.06350 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 -66.06350 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 66.06350 REMARK 350 BIOMT3 3 -1.000000 0.000000 0.000000 -66.06350 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 435 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 522 CG CD CE NZ REMARK 470 ASP A 626 CG OD1 OD2 REMARK 470 GLU B 489 CG CD OE1 OE2 REMARK 470 ASP B 626 CG OD1 OD2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue COA A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LPM A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue COA B 701 DBREF 6ZZK A 437 675 UNP Q8NNJ2 ODP2_CORGL 437 675 DBREF 6ZZK B 437 675 UNP Q8NNJ2 ODP2_CORGL 437 675 SEQADV 6ZZK GLY A 435 UNP Q8NNJ2 EXPRESSION TAG SEQADV 6ZZK SER A 436 UNP Q8NNJ2 EXPRESSION TAG SEQADV 6ZZK GLY B 435 UNP Q8NNJ2 EXPRESSION TAG SEQADV 6ZZK SER B 436 UNP Q8NNJ2 EXPRESSION TAG SEQRES 1 A 241 GLY SER LEU ARG GLY THR THR GLN LYS VAL ASN ARG ILE SEQRES 2 A 241 ARG GLU ILE THR ALA MET LYS THR VAL GLU ALA LEU GLN SEQRES 3 A 241 ILE SER ALA GLN LEU THR GLN LEU HIS GLU VAL ASP MET SEQRES 4 A 241 THR ARG VAL ALA GLU LEU ARG LYS LYS ASN LYS PRO ALA SEQRES 5 A 241 PHE ILE GLU LYS HIS GLY VAL ASN LEU THR TYR LEU PRO SEQRES 6 A 241 PHE PHE VAL LYS ALA VAL VAL GLU ALA LEU VAL SER HIS SEQRES 7 A 241 PRO ASN VAL ASN ALA SER PHE ASN ALA LYS THR LYS GLU SEQRES 8 A 241 MET THR TYR HIS SER SER VAL ASN LEU SER ILE ALA VAL SEQRES 9 A 241 ASP THR PRO ALA GLY LEU LEU THR PRO VAL ILE HIS ASP SEQRES 10 A 241 ALA GLN ASP LEU SER ILE PRO GLU ILE ALA LYS ALA ILE SEQRES 11 A 241 VAL ASP LEU ALA ASP ARG SER ARG ASN ASN LYS LEU LYS SEQRES 12 A 241 PRO ASN ASP LEU SER GLY GLY THR PHE THR ILE THR ASN SEQRES 13 A 241 ILE GLY SER GLU GLY ALA LEU SER ASP THR PRO ILE LEU SEQRES 14 A 241 VAL PRO PRO GLN ALA GLY ILE LEU GLY THR GLY ALA ILE SEQRES 15 A 241 VAL LYS ARG PRO VAL VAL ILE THR GLU ASP GLY ILE ASP SEQRES 16 A 241 SER ILE ALA ILE ARG GLN MET VAL PHE LEU PRO LEU THR SEQRES 17 A 241 TYR ASP HIS GLN VAL VAL ASP GLY ALA ASP ALA GLY ARG SEQRES 18 A 241 PHE LEU THR THR ILE LYS ASP ARG LEU GLU THR ALA ASN SEQRES 19 A 241 PHE GLU GLY ASP LEU GLN LEU SEQRES 1 B 241 GLY SER LEU ARG GLY THR THR GLN LYS VAL ASN ARG ILE SEQRES 2 B 241 ARG GLU ILE THR ALA MET LYS THR VAL GLU ALA LEU GLN SEQRES 3 B 241 ILE SER ALA GLN LEU THR GLN LEU HIS GLU VAL ASP MET SEQRES 4 B 241 THR ARG VAL ALA GLU LEU ARG LYS LYS ASN LYS PRO ALA SEQRES 5 B 241 PHE ILE GLU LYS HIS GLY VAL ASN LEU THR TYR LEU PRO SEQRES 6 B 241 PHE PHE VAL LYS ALA VAL VAL GLU ALA LEU VAL SER HIS SEQRES 7 B 241 PRO ASN VAL ASN ALA SER PHE ASN ALA LYS THR LYS GLU SEQRES 8 B 241 MET THR TYR HIS SER SER VAL ASN LEU SER ILE ALA VAL SEQRES 9 B 241 ASP THR PRO ALA GLY LEU LEU THR PRO VAL ILE HIS ASP SEQRES 10 B 241 ALA GLN ASP LEU SER ILE PRO GLU ILE ALA LYS ALA ILE SEQRES 11 B 241 VAL ASP LEU ALA ASP ARG SER ARG ASN ASN LYS LEU LYS SEQRES 12 B 241 PRO ASN ASP LEU SER GLY GLY THR PHE THR ILE THR ASN SEQRES 13 B 241 ILE GLY SER GLU GLY ALA LEU SER ASP THR PRO ILE LEU SEQRES 14 B 241 VAL PRO PRO GLN ALA GLY ILE LEU GLY THR GLY ALA ILE SEQRES 15 B 241 VAL LYS ARG PRO VAL VAL ILE THR GLU ASP GLY ILE ASP SEQRES 16 B 241 SER ILE ALA ILE ARG GLN MET VAL PHE LEU PRO LEU THR SEQRES 17 B 241 TYR ASP HIS GLN VAL VAL ASP GLY ALA ASP ALA GLY ARG SEQRES 18 B 241 PHE LEU THR THR ILE LYS ASP ARG LEU GLU THR ALA ASN SEQRES 19 B 241 PHE GLU GLY ASP LEU GLN LEU HET COA A 701 48 HET LPM A 702 12 HET COA B 701 48 HETNAM COA COENZYME A HETNAM LPM 6,8-DIMERCAPTO-OCTANOIC ACID AMIDE FORMUL 3 COA 2(C21 H36 N7 O16 P3 S) FORMUL 4 LPM C8 H17 N O S2 FORMUL 6 HOH *320(H2 O) HELIX 1 AA1 ASN A 445 ILE A 461 1 17 HELIX 2 AA2 MET A 473 GLY A 492 1 20 HELIX 3 AA3 TYR A 497 HIS A 512 1 16 HELIX 4 AA4 ASP A 551 LEU A 555 5 5 HELIX 5 AA5 SER A 556 ASN A 573 1 18 HELIX 6 AA6 LYS A 577 SER A 582 5 6 HELIX 7 AA7 ASN A 590 GLY A 595 5 6 HELIX 8 AA8 ASP A 649 ALA A 667 1 19 HELIX 9 AA9 GLU A 670 GLN A 674 5 5 HELIX 10 AB1 ASN B 445 ILE B 461 1 17 HELIX 11 AB2 MET B 473 GLY B 492 1 20 HELIX 12 AB3 TYR B 497 HIS B 512 1 16 HELIX 13 AB4 ASP B 551 LEU B 555 5 5 HELIX 14 AB5 SER B 556 ASN B 573 1 18 HELIX 15 AB6 LYS B 577 SER B 582 5 6 HELIX 16 AB7 ASN B 590 GLY B 595 5 6 HELIX 17 AB8 ASP B 649 ALA B 667 1 19 HELIX 18 AB9 GLU B 670 GLN B 674 5 5 SHEET 1 AA1 6 GLN A 464 ASP A 472 0 SHEET 2 AA1 6 ILE A 628 ASP A 644 -1 O LEU A 641 N GLN A 467 SHEET 3 AA1 6 GLY A 609 GLY A 612 -1 N GLY A 612 O PRO A 640 SHEET 4 AA1 6 PHE A 586 THR A 589 1 N THR A 587 O LEU A 611 SHEET 5 AA1 6 LEU A 534 ILE A 536 1 N SER A 535 O PHE A 586 SHEET 6 AA1 6 VAL A 548 ILE A 549 -1 O ILE A 549 N LEU A 534 SHEET 1 AA2 3 GLN A 464 ASP A 472 0 SHEET 2 AA2 3 ILE A 628 ASP A 644 -1 O LEU A 641 N GLN A 467 SHEET 3 AA2 3 VAL A 617 GLU A 625 -1 N VAL A 617 O MET A 636 SHEET 1 AA3 2 ALA A 517 ASN A 520 0 SHEET 2 AA3 2 GLU A 525 TYR A 528 -1 O THR A 527 N SER A 518 SHEET 1 AA4 6 GLN B 464 ASP B 472 0 SHEET 2 AA4 6 ILE B 628 ASP B 644 -1 O LEU B 641 N GLN B 467 SHEET 3 AA4 6 GLY B 609 GLY B 612 -1 N GLY B 612 O PRO B 640 SHEET 4 AA4 6 PHE B 586 THR B 589 1 N THR B 587 O LEU B 611 SHEET 5 AA4 6 LEU B 534 ILE B 536 1 N SER B 535 O PHE B 586 SHEET 6 AA4 6 VAL B 548 ILE B 549 -1 O ILE B 549 N LEU B 534 SHEET 1 AA5 3 GLN B 464 ASP B 472 0 SHEET 2 AA5 3 ILE B 628 ASP B 644 -1 O LEU B 641 N GLN B 467 SHEET 3 AA5 3 VAL B 617 GLU B 625 -1 N VAL B 617 O MET B 636 SHEET 1 AA6 2 ALA B 517 ASN B 520 0 SHEET 2 AA6 2 GLU B 525 TYR B 528 -1 O THR B 527 N SER B 518 SHEET 1 AA7 2 VAL B 538 THR B 540 0 SHEET 2 AA7 2 GLY B 543 LEU B 545 -1 O LEU B 545 N VAL B 538 CISPEP 1 PRO A 605 PRO A 606 0 12.61 CISPEP 2 PRO B 605 PRO B 606 0 13.12 SITE 1 AC1 27 ARG A 480 LYS A 484 ASN A 494 THR A 496 SITE 2 AC1 27 TYR A 497 LEU A 498 ALA A 537 VAL A 538 SITE 3 AC1 27 ASP A 539 ARG A 572 THR A 589 ASN A 590 SITE 4 AC1 27 ILE A 591 GLY A 592 SER A 593 GLY A 614 SITE 5 AC1 27 ILE A 616 GLY A 650 ALA A 651 HOH A 813 SITE 6 AC1 27 HOH A 822 HOH A 842 HOH A 851 HOH A 860 SITE 7 AC1 27 HOH A 864 HOH A 870 HOH A 894 SITE 1 AC2 12 THR A 451 LEU A 465 LEU A 544 PRO A 601 SITE 2 AC2 12 ILE A 602 VAL A 604 ILE A 610 HIS A 645 SITE 3 AC2 12 HOH A 839 HOH A 918 HOH A 932 SER B 436 SITE 1 AC3 27 ARG B 480 LYS B 484 ASN B 494 THR B 496 SITE 2 AC3 27 TYR B 497 LEU B 498 ALA B 537 VAL B 538 SITE 3 AC3 27 ASP B 539 ARG B 572 THR B 589 ASN B 590 SITE 4 AC3 27 ILE B 591 GLY B 592 SER B 593 GLY B 614 SITE 5 AC3 27 ALA B 615 ILE B 616 GLY B 650 ALA B 651 SITE 6 AC3 27 HOH B 802 HOH B 819 HOH B 839 HOH B 841 SITE 7 AC3 27 HOH B 850 HOH B 851 HOH B 912 CRYST1 132.127 132.127 132.127 90.00 90.00 90.00 P 21 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007568 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007568 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007568 0.00000