HEADER OXIDOREDUCTASE 13-AUG-20 7A1J TITLE FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH ZN(II) AND 3-(3- TITLE 2 PHENYLPROPYL)-2-OXOGLUTARATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOXIA-INDUCIBLE FACTOR 1-ALPHA INHIBITOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FACTOR INHIBITING HIF-1,FIH-1,HYPOXIA-INDUCIBLE FACTOR COMPND 5 ASPARAGINE HYDROXYLASE; COMPND 6 EC: 1.14.11.30,1.14.11.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HIF1AN, FIH1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS HYPOXIA-INDUCIBLE FACTOR ASPARAGINE HYDROXYLASE, DIOXYGENASE, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.NAKASHIMA,L.BREWITZ,C.J.SCHOFIELD REVDAT 3 31-JAN-24 7A1J 1 REMARK REVDAT 2 22-DEC-21 7A1J 1 JRNL REVDAT 1 25-AUG-21 7A1J 0 JRNL AUTH Y.NAKASHIMA,L.BREWITZ,A.TUMBER,E.SALAH,C.J.SCHOFIELD JRNL TITL 2-OXOGLUTARATE DERIVATIVES CAN SELECTIVELY ENHANCE OR JRNL TITL 2 INHIBIT THE ACTIVITY OF HUMAN OXYGENASES. JRNL REF NAT COMMUN V. 12 6478 2021 JRNL REFN ESSN 2041-1723 JRNL PMID 34759269 JRNL DOI 10.1038/S41467-021-26673-2 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.31 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 84236 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 4234 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.3100 - 5.9000 1.00 2676 143 0.1867 0.2223 REMARK 3 2 5.9000 - 4.6800 1.00 2643 158 0.1423 0.1957 REMARK 3 3 4.6800 - 4.0900 1.00 2649 151 0.1191 0.1734 REMARK 3 4 4.0900 - 3.7200 1.00 2704 118 0.1387 0.1387 REMARK 3 5 3.7200 - 3.4500 1.00 2667 134 0.1660 0.1996 REMARK 3 6 3.4500 - 3.2500 1.00 2653 166 0.1870 0.2457 REMARK 3 7 3.2500 - 3.0900 1.00 2668 141 0.2018 0.2269 REMARK 3 8 3.0900 - 2.9500 1.00 2653 153 0.1900 0.1762 REMARK 3 9 2.9500 - 2.8400 1.00 2663 155 0.1997 0.2137 REMARK 3 10 2.8400 - 2.7400 1.00 2686 121 0.1988 0.2432 REMARK 3 11 2.7400 - 2.6500 1.00 2656 162 0.2058 0.2819 REMARK 3 12 2.6500 - 2.5800 1.00 2678 146 0.2068 0.2679 REMARK 3 13 2.5800 - 2.5100 1.00 2683 114 0.1914 0.2076 REMARK 3 14 2.5100 - 2.4500 1.00 2680 124 0.1955 0.2490 REMARK 3 15 2.4500 - 2.3900 1.00 2657 128 0.1801 0.2152 REMARK 3 16 2.3900 - 2.3400 1.00 2658 152 0.1760 0.2141 REMARK 3 17 2.3400 - 2.3000 1.00 2660 141 0.1794 0.1781 REMARK 3 18 2.3000 - 2.2500 1.00 2690 145 0.1859 0.2111 REMARK 3 19 2.2500 - 2.2100 1.00 2635 140 0.1985 0.2234 REMARK 3 20 2.2100 - 2.1800 1.00 2711 127 0.2012 0.2533 REMARK 3 21 2.1800 - 2.1400 1.00 2648 157 0.2308 0.2740 REMARK 3 22 2.1400 - 2.1100 1.00 2681 141 0.2390 0.2613 REMARK 3 23 2.1100 - 2.0800 1.00 2695 133 0.2486 0.2273 REMARK 3 24 2.0800 - 2.0500 1.00 2592 171 0.2630 0.3016 REMARK 3 25 2.0500 - 2.0200 1.00 2727 132 0.2803 0.3084 REMARK 3 26 2.0200 - 1.9900 1.00 2682 115 0.3019 0.2452 REMARK 3 27 1.9900 - 1.9700 1.00 2643 142 0.3211 0.3724 REMARK 3 28 1.9700 - 1.9400 1.00 2691 148 0.3308 0.3546 REMARK 3 29 1.9400 - 1.9200 0.99 2651 143 0.3474 0.2868 REMARK 3 30 1.9200 - 1.9000 0.98 2622 133 0.3569 0.3969 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.244 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.004 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 55.21 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 74.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.020 2879 REMARK 3 ANGLE : 1.317 3926 REMARK 3 CHIRALITY : 0.087 396 REMARK 3 PLANARITY : 0.011 520 REMARK 3 DIHEDRAL : 18.405 1061 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 15 THROUGH 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.5644 29.7062 14.1069 REMARK 3 T TENSOR REMARK 3 T11: 0.9218 T22: 0.6817 REMARK 3 T33: 0.9833 T12: -0.0303 REMARK 3 T13: -0.3371 T23: -0.0476 REMARK 3 L TENSOR REMARK 3 L11: 1.7880 L22: 0.6667 REMARK 3 L33: 1.9872 L12: 0.7843 REMARK 3 L13: -0.3236 L23: -0.3656 REMARK 3 S TENSOR REMARK 3 S11: -0.1254 S12: 0.4155 S13: 0.1191 REMARK 3 S21: -0.6384 S22: -0.1908 S23: 0.9340 REMARK 3 S31: -0.0145 S32: -0.7164 S33: 0.3120 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 50 THROUGH 95 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.1321 16.8065 22.3646 REMARK 3 T TENSOR REMARK 3 T11: 0.7588 T22: 0.4566 REMARK 3 T33: 0.6210 T12: -0.0581 REMARK 3 T13: -0.1583 T23: 0.0721 REMARK 3 L TENSOR REMARK 3 L11: 2.5881 L22: 3.0587 REMARK 3 L33: 3.4383 L12: 0.1887 REMARK 3 L13: -0.1275 L23: 2.3700 REMARK 3 S TENSOR REMARK 3 S11: -0.0443 S12: -0.0285 S13: -0.1835 REMARK 3 S21: 0.0806 S22: -0.0499 S23: 0.4095 REMARK 3 S31: 0.4666 S32: -0.1684 S33: 0.1037 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 96 THROUGH 166 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.0249 20.0717 38.1310 REMARK 3 T TENSOR REMARK 3 T11: 1.0043 T22: 0.6459 REMARK 3 T33: 0.7512 T12: -0.1503 REMARK 3 T13: -0.0035 T23: 0.0518 REMARK 3 L TENSOR REMARK 3 L11: 1.5381 L22: 1.4928 REMARK 3 L33: 2.9359 L12: 0.4218 REMARK 3 L13: 0.5765 L23: 0.5804 REMARK 3 S TENSOR REMARK 3 S11: 0.0017 S12: -0.6070 S13: -0.0298 REMARK 3 S21: 0.6641 S22: -0.1462 S23: 0.3312 REMARK 3 S31: 0.5182 S32: -0.3471 S33: 0.1277 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 167 THROUGH 190 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.7118 17.1159 21.1185 REMARK 3 T TENSOR REMARK 3 T11: 0.8113 T22: 0.5229 REMARK 3 T33: 0.6691 T12: 0.0169 REMARK 3 T13: -0.1543 T23: 0.0027 REMARK 3 L TENSOR REMARK 3 L11: 2.9389 L22: 2.9327 REMARK 3 L33: 1.9982 L12: 1.2006 REMARK 3 L13: 0.2567 L23: 0.9630 REMARK 3 S TENSOR REMARK 3 S11: -0.0079 S12: 0.0667 S13: -0.1697 REMARK 3 S21: -0.0870 S22: 0.3078 S23: -0.4086 REMARK 3 S31: 0.5264 S32: 0.4652 S33: -0.2046 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 191 THROUGH 246 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.9891 33.3436 29.1628 REMARK 3 T TENSOR REMARK 3 T11: 0.7097 T22: 0.4707 REMARK 3 T33: 0.6301 T12: -0.0324 REMARK 3 T13: -0.1038 T23: 0.0245 REMARK 3 L TENSOR REMARK 3 L11: 1.2450 L22: 2.3460 REMARK 3 L33: 2.7877 L12: 0.9063 REMARK 3 L13: 1.1762 L23: 1.1757 REMARK 3 S TENSOR REMARK 3 S11: 0.0010 S12: -0.2192 S13: 0.1374 REMARK 3 S21: 0.0568 S22: -0.0610 S23: 0.4560 REMARK 3 S31: -0.0460 S32: -0.1643 S33: 0.0318 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 247 THROUGH 297 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.8234 32.5266 24.4004 REMARK 3 T TENSOR REMARK 3 T11: 0.7531 T22: 0.4704 REMARK 3 T33: 0.6560 T12: -0.0362 REMARK 3 T13: -0.1388 T23: 0.0143 REMARK 3 L TENSOR REMARK 3 L11: 0.6337 L22: 3.2709 REMARK 3 L33: 2.0026 L12: 0.0046 REMARK 3 L13: -0.0029 L23: 1.4261 REMARK 3 S TENSOR REMARK 3 S11: -0.0712 S12: -0.0234 S13: 0.0155 REMARK 3 S21: -0.2873 S22: 0.0737 S23: 0.4577 REMARK 3 S31: -0.0844 S32: -0.0921 S33: 0.0083 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 298 THROUGH 330 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.7085 36.8155 29.8065 REMARK 3 T TENSOR REMARK 3 T11: 0.7045 T22: 0.6889 REMARK 3 T33: 0.7467 T12: 0.0155 REMARK 3 T13: -0.0964 T23: -0.1326 REMARK 3 L TENSOR REMARK 3 L11: 1.9518 L22: 1.9215 REMARK 3 L33: 0.5258 L12: 0.4720 REMARK 3 L13: -0.1962 L23: 0.7932 REMARK 3 S TENSOR REMARK 3 S11: -0.0216 S12: 0.3487 S13: -0.2249 REMARK 3 S21: -0.1688 S22: 0.1237 S23: -0.3393 REMARK 3 S31: 0.1587 S32: 0.5377 S33: -0.2053 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 331 THROUGH 349 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.2862 50.0431 42.3110 REMARK 3 T TENSOR REMARK 3 T11: 0.6234 T22: 0.7502 REMARK 3 T33: 0.5619 T12: -0.0580 REMARK 3 T13: -0.0469 T23: -0.0708 REMARK 3 L TENSOR REMARK 3 L11: 3.8837 L22: 9.0051 REMARK 3 L33: 5.3674 L12: 1.9833 REMARK 3 L13: -1.3629 L23: -3.2453 REMARK 3 S TENSOR REMARK 3 S11: 0.0237 S12: -0.3331 S13: 0.4229 REMARK 3 S21: -0.0787 S22: 0.1667 S23: 0.7719 REMARK 3 S31: 0.6334 S32: -0.3183 S33: -0.1022 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7A1J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1292110551. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 84236 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 74.577 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 26.10 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 28.00 REMARK 200 R MERGE FOR SHELL (I) : 5.87100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1H2K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6M AMMONIUM SULPHATE, 6% PEG 400, REMARK 280 0.1M HEPES PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.37000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 43.09700 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 43.09700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.18500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 43.09700 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 43.09700 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 111.55500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 43.09700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.09700 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 37.18500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 43.09700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.09700 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 111.55500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 74.37000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -203.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 86.19400 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 86.19400 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 74.37000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 619 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 668 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 THR A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 6 REMARK 465 GLU A 7 REMARK 465 ALA A 8 REMARK 465 VAL A 9 REMARK 465 ALA A 10 REMARK 465 SER A 11 REMARK 465 GLY A 12 REMARK 465 SER A 13 REMARK 465 GLY A 14 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 15 CG CD OE1 OE2 REMARK 470 GLN A 112 CD OE1 NE2 REMARK 470 LYS A 115 CE NZ REMARK 470 ASN A 119 OD1 ND2 REMARK 470 GLN A 137 CG CD OE1 NE2 REMARK 470 ARG A 156 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 157 CE NZ REMARK 470 GLU A 250 CD OE1 OE2 REMARK 470 LYS A 298 CE NZ REMARK 470 LYS A 304 CE NZ REMARK 470 ARG A 305 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 307 CG CD OE1 OE2 REMARK 470 LYS A 311 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 590 O HOH A 641 1.61 REMARK 500 O HOH A 614 O HOH A 633 1.76 REMARK 500 O HOH A 503 O HOH A 604 1.84 REMARK 500 O HOH A 604 O HOH A 641 1.84 REMARK 500 O HOH A 550 O HOH A 655 1.85 REMARK 500 O HOH A 613 O HOH A 656 1.89 REMARK 500 O HOH A 648 O HOH A 653 1.90 REMARK 500 O HOH A 628 O HOH A 673 1.94 REMARK 500 O HOH A 540 O HOH A 604 1.95 REMARK 500 O HOH A 624 O HOH A 650 1.97 REMARK 500 O HOH A 573 O HOH A 616 1.97 REMARK 500 O HOH A 598 O HOH A 635 1.97 REMARK 500 O HOH A 662 O HOH A 664 2.00 REMARK 500 O HOH A 600 O HOH A 636 2.00 REMARK 500 O HOH A 540 O HOH A 641 2.00 REMARK 500 O HOH A 666 O HOH A 670 2.01 REMARK 500 O HOH A 643 O HOH A 663 2.01 REMARK 500 O HOH A 628 O HOH A 646 2.02 REMARK 500 O HOH A 618 O HOH A 653 2.05 REMARK 500 O HOH A 609 O HOH A 667 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 195 CB VAL A 195 CG1 0.130 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 66 37.07 -146.06 REMARK 500 PHE A 100 76.06 -110.95 REMARK 500 ARG A 238 -8.79 85.65 REMARK 500 ASN A 246 72.45 -151.53 REMARK 500 TYR A 276 -5.42 71.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 199 NE2 REMARK 620 2 ASP A 201 OD2 107.2 REMARK 620 3 HIS A 279 NE2 88.8 86.7 REMARK 620 4 QVN A 407 O01 88.3 164.5 92.9 REMARK 620 5 QVN A 407 O02 159.0 92.8 99.0 71.9 REMARK 620 6 HOH A 576 O 86.6 88.2 171.8 93.7 87.6 REMARK 620 N 1 2 3 4 5 DBREF 7A1J A 1 349 UNP Q9NWT6 HIF1N_HUMAN 1 349 SEQRES 1 A 349 MET ALA ALA THR ALA ALA GLU ALA VAL ALA SER GLY SER SEQRES 2 A 349 GLY GLU PRO ARG GLU GLU ALA GLY ALA LEU GLY PRO ALA SEQRES 3 A 349 TRP ASP GLU SER GLN LEU ARG SER TYR SER PHE PRO THR SEQRES 4 A 349 ARG PRO ILE PRO ARG LEU SER GLN SER ASP PRO ARG ALA SEQRES 5 A 349 GLU GLU LEU ILE GLU ASN GLU GLU PRO VAL VAL LEU THR SEQRES 6 A 349 ASP THR ASN LEU VAL TYR PRO ALA LEU LYS TRP ASP LEU SEQRES 7 A 349 GLU TYR LEU GLN GLU ASN ILE GLY ASN GLY ASP PHE SER SEQRES 8 A 349 VAL TYR SER ALA SER THR HIS LYS PHE LEU TYR TYR ASP SEQRES 9 A 349 GLU LYS LYS MET ALA ASN PHE GLN ASN PHE LYS PRO ARG SEQRES 10 A 349 SER ASN ARG GLU GLU MET LYS PHE HIS GLU PHE VAL GLU SEQRES 11 A 349 LYS LEU GLN ASP ILE GLN GLN ARG GLY GLY GLU GLU ARG SEQRES 12 A 349 LEU TYR LEU GLN GLN THR LEU ASN ASP THR VAL GLY ARG SEQRES 13 A 349 LYS ILE VAL MET ASP PHE LEU GLY PHE ASN TRP ASN TRP SEQRES 14 A 349 ILE ASN LYS GLN GLN GLY LYS ARG GLY TRP GLY GLN LEU SEQRES 15 A 349 THR SER ASN LEU LEU LEU ILE GLY MET GLU GLY ASN VAL SEQRES 16 A 349 THR PRO ALA HIS TYR ASP GLU GLN GLN ASN PHE PHE ALA SEQRES 17 A 349 GLN ILE LYS GLY TYR LYS ARG CYS ILE LEU PHE PRO PRO SEQRES 18 A 349 ASP GLN PHE GLU CYS LEU TYR PRO TYR PRO VAL HIS HIS SEQRES 19 A 349 PRO CYS ASP ARG GLN SER GLN VAL ASP PHE ASP ASN PRO SEQRES 20 A 349 ASP TYR GLU ARG PHE PRO ASN PHE GLN ASN VAL VAL GLY SEQRES 21 A 349 TYR GLU THR VAL VAL GLY PRO GLY ASP VAL LEU TYR ILE SEQRES 22 A 349 PRO MET TYR TRP TRP HIS HIS ILE GLU SER LEU LEU ASN SEQRES 23 A 349 GLY GLY ILE THR ILE THR VAL ASN PHE TRP TYR LYS GLY SEQRES 24 A 349 ALA PRO THR PRO LYS ARG ILE GLU TYR PRO LEU LYS ALA SEQRES 25 A 349 HIS GLN LYS VAL ALA ILE MET ARG ASN ILE GLU LYS MET SEQRES 26 A 349 LEU GLY GLU ALA LEU GLY ASN PRO GLN GLU VAL GLY PRO SEQRES 27 A 349 LEU LEU ASN THR MET ILE LYS GLY ARG TYR ASN HET ZN A 401 1 HET SO4 A 402 5 HET SO4 A 403 5 HET SO4 A 404 5 HET SO4 A 405 5 HET SO4 A 406 5 HET QVN A 407 33 HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETNAM QVN 3-(3-PHENYLPROPYL)-2-OXOGLUTARATE HETSYN QVN (4~{S})-2-OXIDANYLIDENE-4-(3-PHENYLPROPYL)PENTANEDIOIC HETSYN 2 QVN ACID FORMUL 2 ZN ZN 2+ FORMUL 3 SO4 5(O4 S 2-) FORMUL 8 QVN C14 H16 O5 FORMUL 9 HOH *175(H2 O) HELIX 1 AA1 ASP A 28 LEU A 32 5 5 HELIX 2 AA2 ASP A 49 ASN A 58 1 10 HELIX 3 AA3 VAL A 70 TRP A 76 5 7 HELIX 4 AA4 ASP A 77 ILE A 85 1 9 HELIX 5 AA5 ASP A 104 MET A 108 5 5 HELIX 6 AA6 LYS A 124 GLY A 139 1 16 HELIX 7 AA7 GLY A 155 GLY A 164 1 10 HELIX 8 AA8 ASN A 166 GLY A 178 1 13 HELIX 9 AA9 PRO A 220 ASP A 222 5 3 HELIX 10 AB1 GLN A 223 TYR A 228 1 6 HELIX 11 AB2 PHE A 252 VAL A 258 5 7 HELIX 12 AB3 LYS A 311 GLY A 331 1 21 HELIX 13 AB4 ASN A 332 GLN A 334 5 3 HELIX 14 AB5 GLU A 335 LYS A 345 1 11 SHEET 1 AA1 5 THR A 39 PRO A 41 0 SHEET 2 AA1 5 GLY A 260 VAL A 265 1 O GLU A 262 N ARG A 40 SHEET 3 AA1 5 LYS A 214 PHE A 219 -1 N LEU A 218 O TYR A 261 SHEET 4 AA1 5 TRP A 278 SER A 283 -1 O GLU A 282 N ARG A 215 SHEET 5 AA1 5 VAL A 195 TYR A 200 -1 N THR A 196 O ILE A 281 SHEET 1 AA2 9 ARG A 44 LEU A 45 0 SHEET 2 AA2 9 VAL A 62 LEU A 64 1 O VAL A 63 N LEU A 45 SHEET 3 AA2 9 VAL A 270 ILE A 273 -1 O VAL A 270 N LEU A 64 SHEET 4 AA2 9 GLN A 204 LYS A 211 -1 N PHE A 207 O LEU A 271 SHEET 5 AA2 9 THR A 290 TYR A 297 -1 O TYR A 297 N GLN A 204 SHEET 6 AA2 9 LEU A 186 GLY A 190 -1 N LEU A 188 O THR A 292 SHEET 7 AA2 9 ARG A 143 THR A 149 -1 N LEU A 146 O ILE A 189 SHEET 8 AA2 9 PHE A 90 ALA A 95 -1 N TYR A 93 O TYR A 145 SHEET 9 AA2 9 ASN A 119 MET A 123 -1 O GLU A 121 N VAL A 92 SHEET 1 AA3 6 ARG A 44 LEU A 45 0 SHEET 2 AA3 6 VAL A 62 LEU A 64 1 O VAL A 63 N LEU A 45 SHEET 3 AA3 6 VAL A 270 ILE A 273 -1 O VAL A 270 N LEU A 64 SHEET 4 AA3 6 GLN A 204 LYS A 211 -1 N PHE A 207 O LEU A 271 SHEET 5 AA3 6 THR A 290 TYR A 297 -1 O TYR A 297 N GLN A 204 SHEET 6 AA3 6 LEU A 182 SER A 184 -1 N THR A 183 O TRP A 296 LINK NE2 HIS A 199 ZN ZN A 401 1555 1555 2.15 LINK OD2 ASP A 201 ZN ZN A 401 1555 1555 2.17 LINK NE2 HIS A 279 ZN ZN A 401 1555 1555 2.28 LINK ZN ZN A 401 O01 QVN A 407 1555 1555 2.33 LINK ZN ZN A 401 O02 QVN A 407 1555 1555 2.45 LINK ZN ZN A 401 O HOH A 576 1555 1555 2.47 CISPEP 1 TYR A 308 PRO A 309 0 3.49 CRYST1 86.194 86.194 148.740 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011602 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011602 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006723 0.00000