HEADER OXIDOREDUCTASE 13-AUG-20 7A1J
TITLE FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH ZN(II) AND 3-(3-
TITLE 2 PHENYLPROPYL)-2-OXOGLUTARATE
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: HYPOXIA-INDUCIBLE FACTOR 1-ALPHA INHIBITOR;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: FACTOR INHIBITING HIF-1,FIH-1,HYPOXIA-INDUCIBLE FACTOR
COMPND 5 ASPARAGINE HYDROXYLASE;
COMPND 6 EC: 1.14.11.30,1.14.11.-;
COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: HIF1AN, FIH1;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008
KEYWDS HYPOXIA-INDUCIBLE FACTOR ASPARAGINE HYDROXYLASE, DIOXYGENASE,
KEYWDS 2 OXIDOREDUCTASE
EXPDTA X-RAY DIFFRACTION
AUTHOR Y.NAKASHIMA,L.BREWITZ,C.J.SCHOFIELD
REVDAT 3 31-JAN-24 7A1J 1 REMARK
REVDAT 2 22-DEC-21 7A1J 1 JRNL
REVDAT 1 25-AUG-21 7A1J 0
JRNL AUTH Y.NAKASHIMA,L.BREWITZ,A.TUMBER,E.SALAH,C.J.SCHOFIELD
JRNL TITL 2-OXOGLUTARATE DERIVATIVES CAN SELECTIVELY ENHANCE OR
JRNL TITL 2 INHIBIT THE ACTIVITY OF HUMAN OXYGENASES.
JRNL REF NAT COMMUN V. 12 6478 2021
JRNL REFN ESSN 2041-1723
JRNL PMID 34759269
JRNL DOI 10.1038/S41467-021-26673-2
REMARK 2
REMARK 2 RESOLUTION. 1.90 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX 1.17.1_3660
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.31
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9
REMARK 3 NUMBER OF REFLECTIONS : 84236
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.175
REMARK 3 R VALUE (WORKING SET) : 0.174
REMARK 3 FREE R VALUE : 0.209
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030
REMARK 3 FREE R VALUE TEST SET COUNT : 4234
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 37.3100 - 5.9000 1.00 2676 143 0.1867 0.2223
REMARK 3 2 5.9000 - 4.6800 1.00 2643 158 0.1423 0.1957
REMARK 3 3 4.6800 - 4.0900 1.00 2649 151 0.1191 0.1734
REMARK 3 4 4.0900 - 3.7200 1.00 2704 118 0.1387 0.1387
REMARK 3 5 3.7200 - 3.4500 1.00 2667 134 0.1660 0.1996
REMARK 3 6 3.4500 - 3.2500 1.00 2653 166 0.1870 0.2457
REMARK 3 7 3.2500 - 3.0900 1.00 2668 141 0.2018 0.2269
REMARK 3 8 3.0900 - 2.9500 1.00 2653 153 0.1900 0.1762
REMARK 3 9 2.9500 - 2.8400 1.00 2663 155 0.1997 0.2137
REMARK 3 10 2.8400 - 2.7400 1.00 2686 121 0.1988 0.2432
REMARK 3 11 2.7400 - 2.6500 1.00 2656 162 0.2058 0.2819
REMARK 3 12 2.6500 - 2.5800 1.00 2678 146 0.2068 0.2679
REMARK 3 13 2.5800 - 2.5100 1.00 2683 114 0.1914 0.2076
REMARK 3 14 2.5100 - 2.4500 1.00 2680 124 0.1955 0.2490
REMARK 3 15 2.4500 - 2.3900 1.00 2657 128 0.1801 0.2152
REMARK 3 16 2.3900 - 2.3400 1.00 2658 152 0.1760 0.2141
REMARK 3 17 2.3400 - 2.3000 1.00 2660 141 0.1794 0.1781
REMARK 3 18 2.3000 - 2.2500 1.00 2690 145 0.1859 0.2111
REMARK 3 19 2.2500 - 2.2100 1.00 2635 140 0.1985 0.2234
REMARK 3 20 2.2100 - 2.1800 1.00 2711 127 0.2012 0.2533
REMARK 3 21 2.1800 - 2.1400 1.00 2648 157 0.2308 0.2740
REMARK 3 22 2.1400 - 2.1100 1.00 2681 141 0.2390 0.2613
REMARK 3 23 2.1100 - 2.0800 1.00 2695 133 0.2486 0.2273
REMARK 3 24 2.0800 - 2.0500 1.00 2592 171 0.2630 0.3016
REMARK 3 25 2.0500 - 2.0200 1.00 2727 132 0.2803 0.3084
REMARK 3 26 2.0200 - 1.9900 1.00 2682 115 0.3019 0.2452
REMARK 3 27 1.9900 - 1.9700 1.00 2643 142 0.3211 0.3724
REMARK 3 28 1.9700 - 1.9400 1.00 2691 148 0.3308 0.3546
REMARK 3 29 1.9400 - 1.9200 0.99 2651 143 0.3474 0.2868
REMARK 3 30 1.9200 - 1.9000 0.98 2622 133 0.3569 0.3969
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.244
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.004
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 55.21
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 74.50
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.020 2879
REMARK 3 ANGLE : 1.317 3926
REMARK 3 CHIRALITY : 0.087 396
REMARK 3 PLANARITY : 0.011 520
REMARK 3 DIHEDRAL : 18.405 1061
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 8
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 15 THROUGH 49 )
REMARK 3 ORIGIN FOR THE GROUP (A): 10.5644 29.7062 14.1069
REMARK 3 T TENSOR
REMARK 3 T11: 0.9218 T22: 0.6817
REMARK 3 T33: 0.9833 T12: -0.0303
REMARK 3 T13: -0.3371 T23: -0.0476
REMARK 3 L TENSOR
REMARK 3 L11: 1.7880 L22: 0.6667
REMARK 3 L33: 1.9872 L12: 0.7843
REMARK 3 L13: -0.3236 L23: -0.3656
REMARK 3 S TENSOR
REMARK 3 S11: -0.1254 S12: 0.4155 S13: 0.1191
REMARK 3 S21: -0.6384 S22: -0.1908 S23: 0.9340
REMARK 3 S31: -0.0145 S32: -0.7164 S33: 0.3120
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 50 THROUGH 95 )
REMARK 3 ORIGIN FOR THE GROUP (A): 19.1321 16.8065 22.3646
REMARK 3 T TENSOR
REMARK 3 T11: 0.7588 T22: 0.4566
REMARK 3 T33: 0.6210 T12: -0.0581
REMARK 3 T13: -0.1583 T23: 0.0721
REMARK 3 L TENSOR
REMARK 3 L11: 2.5881 L22: 3.0587
REMARK 3 L33: 3.4383 L12: 0.1887
REMARK 3 L13: -0.1275 L23: 2.3700
REMARK 3 S TENSOR
REMARK 3 S11: -0.0443 S12: -0.0285 S13: -0.1835
REMARK 3 S21: 0.0806 S22: -0.0499 S23: 0.4095
REMARK 3 S31: 0.4666 S32: -0.1684 S33: 0.1037
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 96 THROUGH 166 )
REMARK 3 ORIGIN FOR THE GROUP (A): 15.0249 20.0717 38.1310
REMARK 3 T TENSOR
REMARK 3 T11: 1.0043 T22: 0.6459
REMARK 3 T33: 0.7512 T12: -0.1503
REMARK 3 T13: -0.0035 T23: 0.0518
REMARK 3 L TENSOR
REMARK 3 L11: 1.5381 L22: 1.4928
REMARK 3 L33: 2.9359 L12: 0.4218
REMARK 3 L13: 0.5765 L23: 0.5804
REMARK 3 S TENSOR
REMARK 3 S11: 0.0017 S12: -0.6070 S13: -0.0298
REMARK 3 S21: 0.6641 S22: -0.1462 S23: 0.3312
REMARK 3 S31: 0.5182 S32: -0.3471 S33: 0.1277
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 167 THROUGH 190 )
REMARK 3 ORIGIN FOR THE GROUP (A): 29.7118 17.1159 21.1185
REMARK 3 T TENSOR
REMARK 3 T11: 0.8113 T22: 0.5229
REMARK 3 T33: 0.6691 T12: 0.0169
REMARK 3 T13: -0.1543 T23: 0.0027
REMARK 3 L TENSOR
REMARK 3 L11: 2.9389 L22: 2.9327
REMARK 3 L33: 1.9982 L12: 1.2006
REMARK 3 L13: 0.2567 L23: 0.9630
REMARK 3 S TENSOR
REMARK 3 S11: -0.0079 S12: 0.0667 S13: -0.1697
REMARK 3 S21: -0.0870 S22: 0.3078 S23: -0.4086
REMARK 3 S31: 0.5264 S32: 0.4652 S33: -0.2046
REMARK 3 TLS GROUP : 5
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 191 THROUGH 246 )
REMARK 3 ORIGIN FOR THE GROUP (A): 20.9891 33.3436 29.1628
REMARK 3 T TENSOR
REMARK 3 T11: 0.7097 T22: 0.4707
REMARK 3 T33: 0.6301 T12: -0.0324
REMARK 3 T13: -0.1038 T23: 0.0245
REMARK 3 L TENSOR
REMARK 3 L11: 1.2450 L22: 2.3460
REMARK 3 L33: 2.7877 L12: 0.9063
REMARK 3 L13: 1.1762 L23: 1.1757
REMARK 3 S TENSOR
REMARK 3 S11: 0.0010 S12: -0.2192 S13: 0.1374
REMARK 3 S21: 0.0568 S22: -0.0610 S23: 0.4560
REMARK 3 S31: -0.0460 S32: -0.1643 S33: 0.0318
REMARK 3 TLS GROUP : 6
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 247 THROUGH 297 )
REMARK 3 ORIGIN FOR THE GROUP (A): 18.8234 32.5266 24.4004
REMARK 3 T TENSOR
REMARK 3 T11: 0.7531 T22: 0.4704
REMARK 3 T33: 0.6560 T12: -0.0362
REMARK 3 T13: -0.1388 T23: 0.0143
REMARK 3 L TENSOR
REMARK 3 L11: 0.6337 L22: 3.2709
REMARK 3 L33: 2.0026 L12: 0.0046
REMARK 3 L13: -0.0029 L23: 1.4261
REMARK 3 S TENSOR
REMARK 3 S11: -0.0712 S12: -0.0234 S13: 0.0155
REMARK 3 S21: -0.2873 S22: 0.0737 S23: 0.4577
REMARK 3 S31: -0.0844 S32: -0.0921 S33: 0.0083
REMARK 3 TLS GROUP : 7
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 298 THROUGH 330 )
REMARK 3 ORIGIN FOR THE GROUP (A): 40.7085 36.8155 29.8065
REMARK 3 T TENSOR
REMARK 3 T11: 0.7045 T22: 0.6889
REMARK 3 T33: 0.7467 T12: 0.0155
REMARK 3 T13: -0.0964 T23: -0.1326
REMARK 3 L TENSOR
REMARK 3 L11: 1.9518 L22: 1.9215
REMARK 3 L33: 0.5258 L12: 0.4720
REMARK 3 L13: -0.1962 L23: 0.7932
REMARK 3 S TENSOR
REMARK 3 S11: -0.0216 S12: 0.3487 S13: -0.2249
REMARK 3 S21: -0.1688 S22: 0.1237 S23: -0.3393
REMARK 3 S31: 0.1587 S32: 0.5377 S33: -0.2053
REMARK 3 TLS GROUP : 8
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 331 THROUGH 349 )
REMARK 3 ORIGIN FOR THE GROUP (A): 37.2862 50.0431 42.3110
REMARK 3 T TENSOR
REMARK 3 T11: 0.6234 T22: 0.7502
REMARK 3 T33: 0.5619 T12: -0.0580
REMARK 3 T13: -0.0469 T23: -0.0708
REMARK 3 L TENSOR
REMARK 3 L11: 3.8837 L22: 9.0051
REMARK 3 L33: 5.3674 L12: 1.9833
REMARK 3 L13: -1.3629 L23: -3.2453
REMARK 3 S TENSOR
REMARK 3 S11: 0.0237 S12: -0.3331 S13: 0.4229
REMARK 3 S21: -0.0787 S22: 0.1667 S23: 0.7719
REMARK 3 S31: 0.6334 S32: -0.3183 S33: -0.1022
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 7A1J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-AUG-20.
REMARK 100 THE DEPOSITION ID IS D_1292110551.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 27-JUN-19
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 7.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : DIAMOND
REMARK 200 BEAMLINE : I03
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.97933
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2
REMARK 200 DATA SCALING SOFTWARE : AUTOPROC
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 84236
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900
REMARK 200 RESOLUTION RANGE LOW (A) : 74.577
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0
REMARK 200 DATA REDUNDANCY : 26.10
REMARK 200 R MERGE (I) : 0.05600
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 25.5000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93
REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0
REMARK 200 DATA REDUNDANCY IN SHELL : 28.00
REMARK 200 R MERGE FOR SHELL (I) : 5.87100
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.700
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 1H2K
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 64.09
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.43
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6M AMMONIUM SULPHATE, 6% PEG 400,
REMARK 280 0.1M HEPES PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE
REMARK 280 277K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z+1/2
REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4
REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4
REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4
REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4
REMARK 290 7555 Y,X,-Z
REMARK 290 8555 -Y,-X,-Z+1/2
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.37000
REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 43.09700
REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 43.09700
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.18500
REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 43.09700
REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 43.09700
REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 111.55500
REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 43.09700
REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.09700
REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 37.18500
REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 43.09700
REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.09700
REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 111.55500
REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 74.37000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 4780 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 30450 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -203.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 86.19400
REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 86.19400
REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 74.37000
REMARK 375
REMARK 375 SPECIAL POSITION
REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS
REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL
REMARK 375 POSITIONS.
REMARK 375
REMARK 375 ATOM RES CSSEQI
REMARK 375 HOH A 619 LIES ON A SPECIAL POSITION.
REMARK 375 HOH A 668 LIES ON A SPECIAL POSITION.
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A 1
REMARK 465 ALA A 2
REMARK 465 ALA A 3
REMARK 465 THR A 4
REMARK 465 ALA A 5
REMARK 465 ALA A 6
REMARK 465 GLU A 7
REMARK 465 ALA A 8
REMARK 465 VAL A 9
REMARK 465 ALA A 10
REMARK 465 SER A 11
REMARK 465 GLY A 12
REMARK 465 SER A 13
REMARK 465 GLY A 14
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 GLU A 15 CG CD OE1 OE2
REMARK 470 GLN A 112 CD OE1 NE2
REMARK 470 LYS A 115 CE NZ
REMARK 470 ASN A 119 OD1 ND2
REMARK 470 GLN A 137 CG CD OE1 NE2
REMARK 470 ARG A 156 CG CD NE CZ NH1 NH2
REMARK 470 LYS A 157 CE NZ
REMARK 470 GLU A 250 CD OE1 OE2
REMARK 470 LYS A 298 CE NZ
REMARK 470 LYS A 304 CE NZ
REMARK 470 ARG A 305 CG CD NE CZ NH1 NH2
REMARK 470 GLU A 307 CG CD OE1 OE2
REMARK 470 LYS A 311 CD CE NZ
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O HOH A 590 O HOH A 641 1.61
REMARK 500 O HOH A 614 O HOH A 633 1.76
REMARK 500 O HOH A 503 O HOH A 604 1.84
REMARK 500 O HOH A 604 O HOH A 641 1.84
REMARK 500 O HOH A 550 O HOH A 655 1.85
REMARK 500 O HOH A 613 O HOH A 656 1.89
REMARK 500 O HOH A 648 O HOH A 653 1.90
REMARK 500 O HOH A 628 O HOH A 673 1.94
REMARK 500 O HOH A 540 O HOH A 604 1.95
REMARK 500 O HOH A 624 O HOH A 650 1.97
REMARK 500 O HOH A 573 O HOH A 616 1.97
REMARK 500 O HOH A 598 O HOH A 635 1.97
REMARK 500 O HOH A 662 O HOH A 664 2.00
REMARK 500 O HOH A 600 O HOH A 636 2.00
REMARK 500 O HOH A 540 O HOH A 641 2.00
REMARK 500 O HOH A 666 O HOH A 670 2.01
REMARK 500 O HOH A 643 O HOH A 663 2.01
REMARK 500 O HOH A 628 O HOH A 646 2.02
REMARK 500 O HOH A 618 O HOH A 653 2.05
REMARK 500 O HOH A 609 O HOH A 667 2.12
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION
REMARK 500 VAL A 195 CB VAL A 195 CG1 0.130
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ASP A 66 37.07 -146.06
REMARK 500 PHE A 100 76.06 -110.95
REMARK 500 ARG A 238 -8.79 85.65
REMARK 500 ASN A 246 72.45 -151.53
REMARK 500 TYR A 276 -5.42 71.19
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN A 401 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HIS A 199 NE2
REMARK 620 2 ASP A 201 OD2 107.2
REMARK 620 3 HIS A 279 NE2 88.8 86.7
REMARK 620 4 QVN A 407 O01 88.3 164.5 92.9
REMARK 620 5 QVN A 407 O02 159.0 92.8 99.0 71.9
REMARK 620 6 HOH A 576 O 86.6 88.2 171.8 93.7 87.6
REMARK 620 N 1 2 3 4 5
DBREF 7A1J A 1 349 UNP Q9NWT6 HIF1N_HUMAN 1 349
SEQRES 1 A 349 MET ALA ALA THR ALA ALA GLU ALA VAL ALA SER GLY SER
SEQRES 2 A 349 GLY GLU PRO ARG GLU GLU ALA GLY ALA LEU GLY PRO ALA
SEQRES 3 A 349 TRP ASP GLU SER GLN LEU ARG SER TYR SER PHE PRO THR
SEQRES 4 A 349 ARG PRO ILE PRO ARG LEU SER GLN SER ASP PRO ARG ALA
SEQRES 5 A 349 GLU GLU LEU ILE GLU ASN GLU GLU PRO VAL VAL LEU THR
SEQRES 6 A 349 ASP THR ASN LEU VAL TYR PRO ALA LEU LYS TRP ASP LEU
SEQRES 7 A 349 GLU TYR LEU GLN GLU ASN ILE GLY ASN GLY ASP PHE SER
SEQRES 8 A 349 VAL TYR SER ALA SER THR HIS LYS PHE LEU TYR TYR ASP
SEQRES 9 A 349 GLU LYS LYS MET ALA ASN PHE GLN ASN PHE LYS PRO ARG
SEQRES 10 A 349 SER ASN ARG GLU GLU MET LYS PHE HIS GLU PHE VAL GLU
SEQRES 11 A 349 LYS LEU GLN ASP ILE GLN GLN ARG GLY GLY GLU GLU ARG
SEQRES 12 A 349 LEU TYR LEU GLN GLN THR LEU ASN ASP THR VAL GLY ARG
SEQRES 13 A 349 LYS ILE VAL MET ASP PHE LEU GLY PHE ASN TRP ASN TRP
SEQRES 14 A 349 ILE ASN LYS GLN GLN GLY LYS ARG GLY TRP GLY GLN LEU
SEQRES 15 A 349 THR SER ASN LEU LEU LEU ILE GLY MET GLU GLY ASN VAL
SEQRES 16 A 349 THR PRO ALA HIS TYR ASP GLU GLN GLN ASN PHE PHE ALA
SEQRES 17 A 349 GLN ILE LYS GLY TYR LYS ARG CYS ILE LEU PHE PRO PRO
SEQRES 18 A 349 ASP GLN PHE GLU CYS LEU TYR PRO TYR PRO VAL HIS HIS
SEQRES 19 A 349 PRO CYS ASP ARG GLN SER GLN VAL ASP PHE ASP ASN PRO
SEQRES 20 A 349 ASP TYR GLU ARG PHE PRO ASN PHE GLN ASN VAL VAL GLY
SEQRES 21 A 349 TYR GLU THR VAL VAL GLY PRO GLY ASP VAL LEU TYR ILE
SEQRES 22 A 349 PRO MET TYR TRP TRP HIS HIS ILE GLU SER LEU LEU ASN
SEQRES 23 A 349 GLY GLY ILE THR ILE THR VAL ASN PHE TRP TYR LYS GLY
SEQRES 24 A 349 ALA PRO THR PRO LYS ARG ILE GLU TYR PRO LEU LYS ALA
SEQRES 25 A 349 HIS GLN LYS VAL ALA ILE MET ARG ASN ILE GLU LYS MET
SEQRES 26 A 349 LEU GLY GLU ALA LEU GLY ASN PRO GLN GLU VAL GLY PRO
SEQRES 27 A 349 LEU LEU ASN THR MET ILE LYS GLY ARG TYR ASN
HET ZN A 401 1
HET SO4 A 402 5
HET SO4 A 403 5
HET SO4 A 404 5
HET SO4 A 405 5
HET SO4 A 406 5
HET QVN A 407 33
HETNAM ZN ZINC ION
HETNAM SO4 SULFATE ION
HETNAM QVN 3-(3-PHENYLPROPYL)-2-OXOGLUTARATE
HETSYN QVN (4~{S})-2-OXIDANYLIDENE-4-(3-PHENYLPROPYL)PENTANEDIOIC
HETSYN 2 QVN ACID
FORMUL 2 ZN ZN 2+
FORMUL 3 SO4 5(O4 S 2-)
FORMUL 8 QVN C14 H16 O5
FORMUL 9 HOH *175(H2 O)
HELIX 1 AA1 ASP A 28 LEU A 32 5 5
HELIX 2 AA2 ASP A 49 ASN A 58 1 10
HELIX 3 AA3 VAL A 70 TRP A 76 5 7
HELIX 4 AA4 ASP A 77 ILE A 85 1 9
HELIX 5 AA5 ASP A 104 MET A 108 5 5
HELIX 6 AA6 LYS A 124 GLY A 139 1 16
HELIX 7 AA7 GLY A 155 GLY A 164 1 10
HELIX 8 AA8 ASN A 166 GLY A 178 1 13
HELIX 9 AA9 PRO A 220 ASP A 222 5 3
HELIX 10 AB1 GLN A 223 TYR A 228 1 6
HELIX 11 AB2 PHE A 252 VAL A 258 5 7
HELIX 12 AB3 LYS A 311 GLY A 331 1 21
HELIX 13 AB4 ASN A 332 GLN A 334 5 3
HELIX 14 AB5 GLU A 335 LYS A 345 1 11
SHEET 1 AA1 5 THR A 39 PRO A 41 0
SHEET 2 AA1 5 GLY A 260 VAL A 265 1 O GLU A 262 N ARG A 40
SHEET 3 AA1 5 LYS A 214 PHE A 219 -1 N LEU A 218 O TYR A 261
SHEET 4 AA1 5 TRP A 278 SER A 283 -1 O GLU A 282 N ARG A 215
SHEET 5 AA1 5 VAL A 195 TYR A 200 -1 N THR A 196 O ILE A 281
SHEET 1 AA2 9 ARG A 44 LEU A 45 0
SHEET 2 AA2 9 VAL A 62 LEU A 64 1 O VAL A 63 N LEU A 45
SHEET 3 AA2 9 VAL A 270 ILE A 273 -1 O VAL A 270 N LEU A 64
SHEET 4 AA2 9 GLN A 204 LYS A 211 -1 N PHE A 207 O LEU A 271
SHEET 5 AA2 9 THR A 290 TYR A 297 -1 O TYR A 297 N GLN A 204
SHEET 6 AA2 9 LEU A 186 GLY A 190 -1 N LEU A 188 O THR A 292
SHEET 7 AA2 9 ARG A 143 THR A 149 -1 N LEU A 146 O ILE A 189
SHEET 8 AA2 9 PHE A 90 ALA A 95 -1 N TYR A 93 O TYR A 145
SHEET 9 AA2 9 ASN A 119 MET A 123 -1 O GLU A 121 N VAL A 92
SHEET 1 AA3 6 ARG A 44 LEU A 45 0
SHEET 2 AA3 6 VAL A 62 LEU A 64 1 O VAL A 63 N LEU A 45
SHEET 3 AA3 6 VAL A 270 ILE A 273 -1 O VAL A 270 N LEU A 64
SHEET 4 AA3 6 GLN A 204 LYS A 211 -1 N PHE A 207 O LEU A 271
SHEET 5 AA3 6 THR A 290 TYR A 297 -1 O TYR A 297 N GLN A 204
SHEET 6 AA3 6 LEU A 182 SER A 184 -1 N THR A 183 O TRP A 296
LINK NE2 HIS A 199 ZN ZN A 401 1555 1555 2.15
LINK OD2 ASP A 201 ZN ZN A 401 1555 1555 2.17
LINK NE2 HIS A 279 ZN ZN A 401 1555 1555 2.28
LINK ZN ZN A 401 O01 QVN A 407 1555 1555 2.33
LINK ZN ZN A 401 O02 QVN A 407 1555 1555 2.45
LINK ZN ZN A 401 O HOH A 576 1555 1555 2.47
CISPEP 1 TYR A 308 PRO A 309 0 3.49
CRYST1 86.194 86.194 148.740 90.00 90.00 90.00 P 41 21 2 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.011602 0.000000 0.000000 0.00000
SCALE2 0.000000 0.011602 0.000000 0.00000
SCALE3 0.000000 0.000000 0.006723 0.00000