HEADER OXIDOREDUCTASE 13-AUG-20 7A1K TITLE FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH ZN(II) AND 3-((9,9- TITLE 2 DIMETHYL-9H-FLUOREN-2-YL)METHYL)-2-OXOGLUTARATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOXIA-INDUCIBLE FACTOR 1-ALPHA INHIBITOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FACTOR INHIBITING HIF-1,FIH-1,HYPOXIA-INDUCIBLE FACTOR COMPND 5 ASPARAGINE HYDROXYLASE; COMPND 6 EC: 1.14.11.30,1.14.11.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HIF1AN, FIH1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS HYPOXIA-INDUCIBLE FACTOR ASPARAGINE HYDROXYLASE, DIOXYGENASE, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.NAKASHIMA,L.BREWITZ,C.J.SCHOFIELD REVDAT 3 31-JAN-24 7A1K 1 REMARK REVDAT 2 22-DEC-21 7A1K 1 JRNL REVDAT 1 25-AUG-21 7A1K 0 JRNL AUTH Y.NAKASHIMA,L.BREWITZ,A.TUMBER,E.SALAH,C.J.SCHOFIELD JRNL TITL 2-OXOGLUTARATE DERIVATIVES CAN SELECTIVELY ENHANCE OR JRNL TITL 2 INHIBIT THE ACTIVITY OF HUMAN OXYGENASES. JRNL REF NAT COMMUN V. 12 6478 2021 JRNL REFN ESSN 2041-1723 JRNL PMID 34759269 JRNL DOI 10.1038/S41467-021-26673-2 REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 73389 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 3628 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.3900 - 5.8900 1.00 2693 146 0.2095 0.2093 REMARK 3 2 5.8900 - 4.6800 1.00 2680 134 0.1720 0.1909 REMARK 3 3 4.6800 - 4.0900 1.00 2636 174 0.1507 0.1793 REMARK 3 4 4.0900 - 3.7100 1.00 2718 131 0.1811 0.1898 REMARK 3 5 3.7100 - 3.4500 1.00 2633 154 0.2030 0.2290 REMARK 3 6 3.4500 - 3.2400 1.00 2710 144 0.2225 0.2855 REMARK 3 7 3.2400 - 3.0800 1.00 2709 116 0.2476 0.2682 REMARK 3 8 3.0800 - 2.9500 1.00 2697 157 0.2425 0.2752 REMARK 3 9 2.9500 - 2.8300 1.00 2682 116 0.2375 0.2661 REMARK 3 10 2.8300 - 2.7400 1.00 2730 115 0.2241 0.2421 REMARK 3 11 2.7400 - 2.6500 1.00 2675 124 0.2196 0.2318 REMARK 3 12 2.6500 - 2.5700 1.00 2709 141 0.2258 0.2631 REMARK 3 13 2.5700 - 2.5100 1.00 2696 126 0.2131 0.2254 REMARK 3 14 2.5100 - 2.4500 1.00 2674 144 0.2163 0.2397 REMARK 3 15 2.4500 - 2.3900 1.00 2639 148 0.2106 0.2711 REMARK 3 16 2.3900 - 2.3400 1.00 2728 142 0.2237 0.2807 REMARK 3 17 2.3400 - 2.2900 1.00 2673 152 0.2380 0.2496 REMARK 3 18 2.2900 - 2.2500 1.00 2688 143 0.2532 0.2731 REMARK 3 19 2.2500 - 2.2100 1.00 2647 145 0.2590 0.2723 REMARK 3 20 2.2100 - 2.1700 1.00 2689 162 0.2821 0.3489 REMARK 3 21 2.1700 - 2.1400 1.00 2686 134 0.3143 0.3593 REMARK 3 22 2.1400 - 2.1000 1.00 2681 140 0.3313 0.3689 REMARK 3 23 2.1000 - 2.0700 0.99 2666 135 0.3247 0.3409 REMARK 3 24 2.0700 - 2.0400 1.00 2689 129 0.3604 0.3393 REMARK 3 25 2.0400 - 2.0200 0.99 2670 137 0.3977 0.3651 REMARK 3 26 2.0200 - 1.9900 0.98 2663 139 0.4303 0.4638 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.308 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.673 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 56.54 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 86.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2882 REMARK 3 ANGLE : 0.673 3937 REMARK 3 CHIRALITY : 0.054 396 REMARK 3 PLANARITY : 0.005 521 REMARK 3 DIHEDRAL : 17.552 1057 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 15 THROUGH 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.5350 29.5073 14.3052 REMARK 3 T TENSOR REMARK 3 T11: 0.9347 T22: 0.6103 REMARK 3 T33: 1.0626 T12: -0.0017 REMARK 3 T13: -0.2705 T23: -0.0319 REMARK 3 L TENSOR REMARK 3 L11: 1.4759 L22: 0.8475 REMARK 3 L33: 0.6949 L12: 0.7850 REMARK 3 L13: 0.1447 L23: -0.4635 REMARK 3 S TENSOR REMARK 3 S11: -0.2132 S12: 0.2828 S13: -0.0975 REMARK 3 S21: -0.8348 S22: -0.3039 S23: 1.1380 REMARK 3 S31: -0.3563 S32: -0.4260 S33: 0.4428 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 50 THROUGH 190 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.9016 18.1516 30.3023 REMARK 3 T TENSOR REMARK 3 T11: 0.8505 T22: 0.4946 REMARK 3 T33: 0.5757 T12: -0.0245 REMARK 3 T13: -0.0530 T23: 0.0925 REMARK 3 L TENSOR REMARK 3 L11: 2.7448 L22: 3.2318 REMARK 3 L33: 1.8634 L12: 0.1119 REMARK 3 L13: -0.0137 L23: 1.7294 REMARK 3 S TENSOR REMARK 3 S11: -0.0473 S12: -0.4905 S13: -0.2396 REMARK 3 S21: 0.6862 S22: 0.0113 S23: 0.3058 REMARK 3 S31: 0.6164 S32: -0.1392 S33: 0.0269 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 191 THROUGH 330 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.4262 33.5958 27.6763 REMARK 3 T TENSOR REMARK 3 T11: 0.6842 T22: 0.4397 REMARK 3 T33: 0.6020 T12: -0.0193 REMARK 3 T13: -0.1068 T23: 0.0114 REMARK 3 L TENSOR REMARK 3 L11: 1.0268 L22: 2.1137 REMARK 3 L33: 2.2161 L12: 0.2146 REMARK 3 L13: 0.5422 L23: 0.8407 REMARK 3 S TENSOR REMARK 3 S11: -0.0170 S12: -0.1021 S13: 0.0171 REMARK 3 S21: 0.0087 S22: 0.0452 S23: 0.1795 REMARK 3 S31: 0.0105 S32: -0.0006 S33: -0.0473 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 331 THROUGH 349 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.5126 49.8805 42.3160 REMARK 3 T TENSOR REMARK 3 T11: 0.5283 T22: 0.6843 REMARK 3 T33: 0.4949 T12: -0.0241 REMARK 3 T13: -0.0612 T23: -0.0898 REMARK 3 L TENSOR REMARK 3 L11: 6.3394 L22: 6.1357 REMARK 3 L33: 5.0918 L12: 2.0099 REMARK 3 L13: -1.7803 L23: -0.7103 REMARK 3 S TENSOR REMARK 3 S11: -0.1845 S12: -0.4046 S13: 0.6403 REMARK 3 S21: -0.0474 S22: 0.1433 S23: 0.5859 REMARK 3 S31: 0.3861 S32: 0.0785 S33: -0.0780 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7A1K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1292110657. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 73389 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 74.588 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 26.20 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 27.70 REMARK 200 R MERGE FOR SHELL (I) : 5.66500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1H2K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6M AMMONIUM SULPHATE, 6% PEG 400, REMARK 280 0.1M HEPES PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.44900 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 43.09050 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 43.09050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.22450 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 43.09050 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 43.09050 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 111.67350 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 43.09050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.09050 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 37.22450 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 43.09050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.09050 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 111.67350 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 74.44900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -125.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 86.18100 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 86.18100 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 74.44900 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 THR A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 6 REMARK 465 GLU A 7 REMARK 465 ALA A 8 REMARK 465 VAL A 9 REMARK 465 ALA A 10 REMARK 465 SER A 11 REMARK 465 GLY A 12 REMARK 465 SER A 13 REMARK 465 GLY A 14 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 15 CG CD OE1 OE2 REMARK 470 GLN A 112 CD OE1 NE2 REMARK 470 LYS A 115 CG CD CE NZ REMARK 470 ARG A 117 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 133 CG CD OE1 NE2 REMARK 470 ARG A 156 NE CZ NH1 NH2 REMARK 470 LYS A 157 CE NZ REMARK 470 LYS A 298 CE NZ REMARK 470 LYS A 304 CE NZ REMARK 470 ARG A 305 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 307 CG CD OE1 OE2 REMARK 470 LYS A 311 CD CE NZ REMARK 470 LYS A 345 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 551 O HOH A 556 2.12 REMARK 500 O HOH A 529 O HOH A 552 2.19 REMARK 500 O HOH A 557 O HOH A 560 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 95 138.19 -170.37 REMARK 500 ASN A 151 -159.83 -149.46 REMARK 500 ARG A 238 -4.35 83.20 REMARK 500 TYR A 276 -5.29 73.87 REMARK 500 ASN A 332 119.87 -167.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 199 NE2 REMARK 620 2 ASP A 201 OD2 116.8 REMARK 620 3 HIS A 279 NE2 94.0 79.2 REMARK 620 4 QVZ A 402 O01 82.4 158.8 109.9 REMARK 620 5 QVZ A 402 O02 153.7 82.3 107.9 76.6 REMARK 620 6 HOH A 502 O 76.1 83.1 153.2 93.8 89.4 REMARK 620 N 1 2 3 4 5 DBREF 7A1K A 1 349 UNP Q9NWT6 HIF1N_HUMAN 1 349 SEQRES 1 A 349 MET ALA ALA THR ALA ALA GLU ALA VAL ALA SER GLY SER SEQRES 2 A 349 GLY GLU PRO ARG GLU GLU ALA GLY ALA LEU GLY PRO ALA SEQRES 3 A 349 TRP ASP GLU SER GLN LEU ARG SER TYR SER PHE PRO THR SEQRES 4 A 349 ARG PRO ILE PRO ARG LEU SER GLN SER ASP PRO ARG ALA SEQRES 5 A 349 GLU GLU LEU ILE GLU ASN GLU GLU PRO VAL VAL LEU THR SEQRES 6 A 349 ASP THR ASN LEU VAL TYR PRO ALA LEU LYS TRP ASP LEU SEQRES 7 A 349 GLU TYR LEU GLN GLU ASN ILE GLY ASN GLY ASP PHE SER SEQRES 8 A 349 VAL TYR SER ALA SER THR HIS LYS PHE LEU TYR TYR ASP SEQRES 9 A 349 GLU LYS LYS MET ALA ASN PHE GLN ASN PHE LYS PRO ARG SEQRES 10 A 349 SER ASN ARG GLU GLU MET LYS PHE HIS GLU PHE VAL GLU SEQRES 11 A 349 LYS LEU GLN ASP ILE GLN GLN ARG GLY GLY GLU GLU ARG SEQRES 12 A 349 LEU TYR LEU GLN GLN THR LEU ASN ASP THR VAL GLY ARG SEQRES 13 A 349 LYS ILE VAL MET ASP PHE LEU GLY PHE ASN TRP ASN TRP SEQRES 14 A 349 ILE ASN LYS GLN GLN GLY LYS ARG GLY TRP GLY GLN LEU SEQRES 15 A 349 THR SER ASN LEU LEU LEU ILE GLY MET GLU GLY ASN VAL SEQRES 16 A 349 THR PRO ALA HIS TYR ASP GLU GLN GLN ASN PHE PHE ALA SEQRES 17 A 349 GLN ILE LYS GLY TYR LYS ARG CYS ILE LEU PHE PRO PRO SEQRES 18 A 349 ASP GLN PHE GLU CYS LEU TYR PRO TYR PRO VAL HIS HIS SEQRES 19 A 349 PRO CYS ASP ARG GLN SER GLN VAL ASP PHE ASP ASN PRO SEQRES 20 A 349 ASP TYR GLU ARG PHE PRO ASN PHE GLN ASN VAL VAL GLY SEQRES 21 A 349 TYR GLU THR VAL VAL GLY PRO GLY ASP VAL LEU TYR ILE SEQRES 22 A 349 PRO MET TYR TRP TRP HIS HIS ILE GLU SER LEU LEU ASN SEQRES 23 A 349 GLY GLY ILE THR ILE THR VAL ASN PHE TRP TYR LYS GLY SEQRES 24 A 349 ALA PRO THR PRO LYS ARG ILE GLU TYR PRO LEU LYS ALA SEQRES 25 A 349 HIS GLN LYS VAL ALA ILE MET ARG ASN ILE GLU LYS MET SEQRES 26 A 349 LEU GLY GLU ALA LEU GLY ASN PRO GLN GLU VAL GLY PRO SEQRES 27 A 349 LEU LEU ASN THR MET ILE LYS GLY ARG TYR ASN HET ZN A 401 1 HET QVZ A 402 44 HET SO4 A 403 5 HET SO4 A 404 5 HET SO4 A 405 5 HET SO4 A 406 5 HETNAM ZN ZINC ION HETNAM QVZ 3-((9,9-DIMETHYL-9H-FLUOREN-2-YL)METHYL)-2-OXOGLUTARATE HETNAM SO4 SULFATE ION HETSYN QVZ (3~{S})-3-[(9,9-DIMETHYLFLUOREN-2-YL)METHYL]-2- HETSYN 2 QVZ OXIDANYLIDENE-PENTANEDIOIC ACID FORMUL 2 ZN ZN 2+ FORMUL 3 QVZ C21 H20 O5 FORMUL 4 SO4 4(O4 S 2-) FORMUL 8 HOH *63(H2 O) HELIX 1 AA1 GLU A 19 LEU A 23 5 5 HELIX 2 AA2 ASP A 28 LEU A 32 5 5 HELIX 3 AA3 ASP A 49 ASN A 58 1 10 HELIX 4 AA4 VAL A 70 TRP A 76 5 7 HELIX 5 AA5 ASP A 77 ILE A 85 1 9 HELIX 6 AA6 ASP A 104 ASN A 110 5 7 HELIX 7 AA7 LYS A 124 ARG A 138 1 15 HELIX 8 AA8 GLY A 155 GLY A 164 1 10 HELIX 9 AA9 ASN A 166 ARG A 177 1 12 HELIX 10 AB1 PRO A 220 ASP A 222 5 3 HELIX 11 AB2 GLN A 223 TYR A 228 1 6 HELIX 12 AB3 PHE A 252 VAL A 258 5 7 HELIX 13 AB4 LYS A 311 GLY A 331 1 21 HELIX 14 AB5 ASN A 332 GLN A 334 5 3 HELIX 15 AB6 GLU A 335 LYS A 345 1 11 SHEET 1 AA1 5 THR A 39 PRO A 41 0 SHEET 2 AA1 5 GLY A 260 VAL A 265 1 O GLU A 262 N ARG A 40 SHEET 3 AA1 5 LYS A 214 PHE A 219 -1 N LEU A 218 O TYR A 261 SHEET 4 AA1 5 TRP A 278 SER A 283 -1 O HIS A 280 N ILE A 217 SHEET 5 AA1 5 VAL A 195 HIS A 199 -1 N THR A 196 O ILE A 281 SHEET 1 AA2 9 ARG A 44 LEU A 45 0 SHEET 2 AA2 9 VAL A 62 LEU A 64 1 O VAL A 63 N LEU A 45 SHEET 3 AA2 9 VAL A 270 ILE A 273 -1 O VAL A 270 N LEU A 64 SHEET 4 AA2 9 GLN A 204 LYS A 211 -1 N ASN A 205 O ILE A 273 SHEET 5 AA2 9 THR A 290 TYR A 297 -1 O TYR A 297 N GLN A 204 SHEET 6 AA2 9 LEU A 182 GLY A 190 -1 N THR A 183 O TRP A 296 SHEET 7 AA2 9 ARG A 143 THR A 149 -1 N LEU A 146 O ILE A 189 SHEET 8 AA2 9 PHE A 90 ALA A 95 -1 N TYR A 93 O TYR A 145 SHEET 9 AA2 9 ASN A 119 MET A 123 -1 O MET A 123 N PHE A 90 LINK NE2 HIS A 199 ZN ZN A 401 1555 1555 2.14 LINK OD2 ASP A 201 ZN ZN A 401 1555 1555 2.10 LINK NE2 HIS A 279 ZN ZN A 401 1555 1555 2.15 LINK ZN ZN A 401 O01 QVZ A 402 1555 1555 2.23 LINK ZN ZN A 401 O02 QVZ A 402 1555 1555 1.93 LINK ZN ZN A 401 O HOH A 502 1555 1555 2.25 CISPEP 1 TYR A 308 PRO A 309 0 5.57 CRYST1 86.181 86.181 148.898 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011603 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011603 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006716 0.00000