HEADER OXIDOREDUCTASE 13-AUG-20 7A1M
TITLE FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH ZN(II) AND 3-PROPYL-2-
TITLE 2 OXOGLUTARATE
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: HYPOXIA-INDUCIBLE FACTOR 1-ALPHA INHIBITOR;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: FACTOR INHIBITING HIF-1,FIH-1,HYPOXIA-INDUCIBLE FACTOR
COMPND 5 ASPARAGINE HYDROXYLASE;
COMPND 6 EC: 1.14.11.30,1.14.11.-;
COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: HIF1AN, FIH1;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008
KEYWDS HYPOXIA-INDUCIBLE FACTOR ASPARAGINE HYDROXYLASE, DIOXYGENASE,
KEYWDS 2 OXIDOREDUCTASE
EXPDTA X-RAY DIFFRACTION
AUTHOR Y.NAKASHIMA,L.BREWITZ,C.J.SCHOFIELD
REVDAT 3 31-JAN-24 7A1M 1 REMARK
REVDAT 2 22-DEC-21 7A1M 1 JRNL
REVDAT 1 25-AUG-21 7A1M 0
JRNL AUTH Y.NAKASHIMA,L.BREWITZ,A.TUMBER,E.SALAH,C.J.SCHOFIELD
JRNL TITL 2-OXOGLUTARATE DERIVATIVES CAN SELECTIVELY ENHANCE OR
JRNL TITL 2 INHIBIT THE ACTIVITY OF HUMAN OXYGENASES.
JRNL REF NAT COMMUN V. 12 6478 2021
JRNL REFN ESSN 2041-1723
JRNL PMID 34759269
JRNL DOI 10.1038/S41467-021-26673-2
REMARK 2
REMARK 2 RESOLUTION. 2.18 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX 1.17.1_3660
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.18
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.29
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330
REMARK 3 COMPLETENESS FOR RANGE (%) : 92.8
REMARK 3 NUMBER OF REFLECTIONS : 51777
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.222
REMARK 3 R VALUE (WORKING SET) : 0.220
REMARK 3 FREE R VALUE : 0.245
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800
REMARK 3 FREE R VALUE TEST SET COUNT : 2487
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 56.2900 - 5.7100 1.00 2966 142 0.2091 0.2214
REMARK 3 2 5.7100 - 4.5300 1.00 2916 158 0.1738 0.1985
REMARK 3 3 4.5300 - 3.9600 1.00 2945 175 0.1657 0.2011
REMARK 3 4 3.9600 - 3.6000 0.85 2509 131 0.1912 0.2245
REMARK 3 5 3.6000 - 3.3400 1.00 2969 120 0.2185 0.2546
REMARK 3 6 3.3400 - 3.1400 1.00 2958 145 0.2323 0.2497
REMARK 3 7 3.1400 - 2.9800 1.00 2917 158 0.2384 0.2671
REMARK 3 8 2.9800 - 2.8500 1.00 2984 147 0.2342 0.2772
REMARK 3 9 2.8500 - 2.7400 1.00 2917 141 0.2631 0.2885
REMARK 3 10 2.7400 - 2.6500 1.00 2958 152 0.2900 0.3692
REMARK 3 11 2.6500 - 2.5700 1.00 2931 146 0.3015 0.2980
REMARK 3 12 2.5700 - 2.4900 1.00 2934 153 0.2967 0.2858
REMARK 3 13 2.4900 - 2.4300 1.00 3017 127 0.3014 0.3607
REMARK 3 14 2.4300 - 2.3700 1.00 2912 157 0.3350 0.3324
REMARK 3 15 2.3700 - 2.3100 1.00 2915 144 0.3635 0.3902
REMARK 3 16 2.3100 - 2.2700 0.98 2814 154 0.3879 0.4468
REMARK 3 17 2.2200 - 2.2200 0.26 16 0 0.4928 0.0000
REMARK 3 18 2.2200 - 2.1800 0.92 2712 137 0.4641 0.4816
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.430
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.075
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 55.99
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 77.38
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.003 2866
REMARK 3 ANGLE : 0.585 3909
REMARK 3 CHIRALITY : 0.047 396
REMARK 3 PLANARITY : 0.004 521
REMARK 3 DIHEDRAL : 17.951 1059
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 9
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 15 THROUGH 49 )
REMARK 3 ORIGIN FOR THE GROUP (A): 10.4651 29.3952 14.3042
REMARK 3 T TENSOR
REMARK 3 T11: 0.9499 T22: 0.6524
REMARK 3 T33: 1.0638 T12: -0.0144
REMARK 3 T13: -0.3031 T23: -0.0237
REMARK 3 L TENSOR
REMARK 3 L11: 2.0297 L22: 0.3023
REMARK 3 L33: 0.7886 L12: 0.7741
REMARK 3 L13: 0.0914 L23: -0.0353
REMARK 3 S TENSOR
REMARK 3 S11: -0.0960 S12: 0.0210 S13: -0.0624
REMARK 3 S21: -0.8323 S22: -0.3334 S23: 1.0172
REMARK 3 S31: -0.4198 S32: -0.3123 S33: 0.2990
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 50 THROUGH 105 )
REMARK 3 ORIGIN FOR THE GROUP (A): 18.7992 19.2768 25.2250
REMARK 3 T TENSOR
REMARK 3 T11: 0.7312 T22: 0.4820
REMARK 3 T33: 0.6872 T12: -0.0653
REMARK 3 T13: -0.1057 T23: 0.0373
REMARK 3 L TENSOR
REMARK 3 L11: 1.7624 L22: 3.0535
REMARK 3 L33: 2.2403 L12: -0.4166
REMARK 3 L13: -0.0514 L23: 1.0952
REMARK 3 S TENSOR
REMARK 3 S11: -0.0492 S12: -0.1073 S13: -0.2075
REMARK 3 S21: 0.1290 S22: -0.0665 S23: 0.2719
REMARK 3 S31: 0.1737 S32: -0.0106 S33: 0.0765
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 106 THROUGH 124 )
REMARK 3 ORIGIN FOR THE GROUP (A): 20.4919 27.1799 46.4967
REMARK 3 T TENSOR
REMARK 3 T11: 1.1553 T22: 1.0381
REMARK 3 T33: 0.7940 T12: -0.1452
REMARK 3 T13: 0.0552 T23: 0.0378
REMARK 3 L TENSOR
REMARK 3 L11: 0.4409 L22: 0.1381
REMARK 3 L33: 0.9279 L12: -0.1693
REMARK 3 L13: 0.6220 L23: -0.3365
REMARK 3 S TENSOR
REMARK 3 S11: 0.4330 S12: -1.5782 S13: 0.0936
REMARK 3 S21: 1.2461 S22: -0.9338 S23: 0.0483
REMARK 3 S31: 0.0658 S32: -0.1969 S33: 0.4786
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 125 THROUGH 166 )
REMARK 3 ORIGIN FOR THE GROUP (A): 12.1330 12.8953 34.1221
REMARK 3 T TENSOR
REMARK 3 T11: 0.9934 T22: 0.6653
REMARK 3 T33: 0.7372 T12: -0.1914
REMARK 3 T13: 0.0390 T23: 0.0541
REMARK 3 L TENSOR
REMARK 3 L11: 0.7756 L22: 1.6468
REMARK 3 L33: 1.9417 L12: 0.0884
REMARK 3 L13: 0.5109 L23: 0.0750
REMARK 3 S TENSOR
REMARK 3 S11: -0.0633 S12: -0.2123 S13: -0.5676
REMARK 3 S21: 0.6803 S22: -0.1203 S23: 0.4778
REMARK 3 S31: 0.7334 S32: -0.4412 S33: 0.0105
REMARK 3 TLS GROUP : 5
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 167 THROUGH 190 )
REMARK 3 ORIGIN FOR THE GROUP (A): 29.6897 16.7734 21.0842
REMARK 3 T TENSOR
REMARK 3 T11: 0.8580 T22: 0.5415
REMARK 3 T33: 0.7892 T12: 0.0293
REMARK 3 T13: -0.1244 T23: -0.0358
REMARK 3 L TENSOR
REMARK 3 L11: 2.8828 L22: 2.3320
REMARK 3 L33: 1.0997 L12: 1.1518
REMARK 3 L13: 0.7309 L23: 0.5237
REMARK 3 S TENSOR
REMARK 3 S11: -0.0272 S12: 0.1001 S13: 0.0014
REMARK 3 S21: 0.1565 S22: 0.3168 S23: -0.2219
REMARK 3 S31: 0.2240 S32: 0.4386 S33: -0.4053
REMARK 3 TLS GROUP : 6
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 191 THROUGH 247 )
REMARK 3 ORIGIN FOR THE GROUP (A): 20.9099 33.1793 29.3326
REMARK 3 T TENSOR
REMARK 3 T11: 0.7081 T22: 0.5271
REMARK 3 T33: 0.7048 T12: -0.0258
REMARK 3 T13: -0.1216 T23: 0.0035
REMARK 3 L TENSOR
REMARK 3 L11: 0.3987 L22: 1.7164
REMARK 3 L33: 2.2450 L12: 0.3987
REMARK 3 L13: 0.7717 L23: 0.5041
REMARK 3 S TENSOR
REMARK 3 S11: 0.0151 S12: -0.1985 S13: 0.1930
REMARK 3 S21: 0.1363 S22: -0.0683 S23: 0.3146
REMARK 3 S31: -0.0611 S32: -0.0771 S33: 0.0481
REMARK 3 TLS GROUP : 7
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 248 THROUGH 297 )
REMARK 3 ORIGIN FOR THE GROUP (A): 18.9033 31.9375 24.4226
REMARK 3 T TENSOR
REMARK 3 T11: 0.7747 T22: 0.5089
REMARK 3 T33: 0.7474 T12: -0.0346
REMARK 3 T13: -0.0948 T23: -0.0115
REMARK 3 L TENSOR
REMARK 3 L11: 0.3103 L22: 2.6815
REMARK 3 L33: 0.6527 L12: -0.9214
REMARK 3 L13: -0.1017 L23: 0.3541
REMARK 3 S TENSOR
REMARK 3 S11: -0.0383 S12: 0.0277 S13: 0.1039
REMARK 3 S21: 0.0308 S22: 0.0544 S23: 0.1230
REMARK 3 S31: 0.0187 S32: -0.1612 S33: -0.0068
REMARK 3 TLS GROUP : 8
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 298 THROUGH 330 )
REMARK 3 ORIGIN FOR THE GROUP (A): 40.6329 36.5674 29.8682
REMARK 3 T TENSOR
REMARK 3 T11: 0.7172 T22: 0.6726
REMARK 3 T33: 0.8918 T12: 0.0073
REMARK 3 T13: -0.1114 T23: -0.0657
REMARK 3 L TENSOR
REMARK 3 L11: 1.2412 L22: 1.7356
REMARK 3 L33: 0.4018 L12: 0.1242
REMARK 3 L13: -0.2564 L23: 0.8721
REMARK 3 S TENSOR
REMARK 3 S11: -0.0127 S12: 0.0354 S13: 0.0220
REMARK 3 S21: 0.2203 S22: 0.0565 S23: -0.2248
REMARK 3 S31: 0.4546 S32: 0.3593 S33: -0.1359
REMARK 3 TLS GROUP : 9
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 331 THROUGH 349 )
REMARK 3 ORIGIN FOR THE GROUP (A): 37.3701 49.7206 42.3626
REMARK 3 T TENSOR
REMARK 3 T11: 0.6824 T22: 0.7292
REMARK 3 T33: 0.6006 T12: -0.0579
REMARK 3 T13: -0.0306 T23: -0.0323
REMARK 3 L TENSOR
REMARK 3 L11: 4.0544 L22: 4.1583
REMARK 3 L33: 2.7638 L12: 0.8748
REMARK 3 L13: -0.4748 L23: 0.0327
REMARK 3 S TENSOR
REMARK 3 S11: -0.0673 S12: -0.4479 S13: 0.5876
REMARK 3 S21: 0.2183 S22: 0.2506 S23: 0.5975
REMARK 3 S31: 0.4719 S32: -0.3115 S33: -0.0829
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 7A1M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-AUG-20.
REMARK 100 THE DEPOSITION ID IS D_1292110656.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 30-NOV-19
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 7.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : DIAMOND
REMARK 200 BEAMLINE : I04
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.97950
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : AUTOPROC
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51777
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.178
REMARK 200 RESOLUTION RANGE LOW (A) : 74.448
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 93.7
REMARK 200 DATA REDUNDANCY : 25.80
REMARK 200 R MERGE (I) : 0.15600
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.1000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.18
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.22
REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0
REMARK 200 DATA REDUNDANCY IN SHELL : 24.20
REMARK 200 R MERGE FOR SHELL (I) : 6.80700
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.500
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 1H2K
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 63.94
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.41
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6M AMMONIUM SULPHATE, 6% PEG 400,
REMARK 280 0.1M HEPES PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE
REMARK 280 277K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z+1/2
REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4
REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4
REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4
REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4
REMARK 290 7555 Y,X,-Z
REMARK 290 8555 -Y,-X,-Z+1/2
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.47850
REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 42.97700
REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 42.97700
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.23925
REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 42.97700
REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 42.97700
REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 111.71775
REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 42.97700
REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 42.97700
REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 37.23925
REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 42.97700
REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 42.97700
REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 111.71775
REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 74.47850
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 4310 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 30400 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -171.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 85.95400
REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 85.95400
REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 74.47850
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A 1
REMARK 465 ALA A 2
REMARK 465 ALA A 3
REMARK 465 THR A 4
REMARK 465 ALA A 5
REMARK 465 ALA A 6
REMARK 465 GLU A 7
REMARK 465 ALA A 8
REMARK 465 VAL A 9
REMARK 465 ALA A 10
REMARK 465 SER A 11
REMARK 465 GLY A 12
REMARK 465 SER A 13
REMARK 465 GLY A 14
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 GLU A 15 CG CD OE1 OE2
REMARK 470 LYS A 106 CG CD CE NZ
REMARK 470 LYS A 115 CG CD CE NZ
REMARK 470 ARG A 117 CG CD NE CZ NH1 NH2
REMARK 470 ARG A 156 NE CZ NH1 NH2
REMARK 470 GLU A 250 CD OE1 OE2
REMARK 470 LYS A 298 CE NZ
REMARK 470 LYS A 304 CG CD CE NZ
REMARK 470 ARG A 305 CG CD NE CZ NH1 NH2
REMARK 470 GLU A 307 CG CD OE1 OE2
REMARK 470 LYS A 311 CD CE NZ
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 HE ARG A 238 O HOH A 601 1.40
REMARK 500 O HOH A 639 O HOH A 655 2.10
REMARK 500 O HOH A 645 O HOH A 647 2.11
REMARK 500 O HOH A 637 O HOH A 655 2.18
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375
REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.
REMARK 500
REMARK 500 DISTANCE CUTOFF:
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE
REMARK 500 O HOH A 625 O HOH A 634 8665 2.19
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ASP A 66 45.00 -145.11
REMARK 500 PHE A 100 70.20 -108.09
REMARK 500 ILE A 210 -55.71 -120.61
REMARK 500 ARG A 238 -9.10 87.29
REMARK 500 ASN A 246 73.10 -150.67
REMARK 500 TYR A 276 -2.56 74.67
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN A 500 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HIS A 199 NE2
REMARK 620 2 ASP A 201 OD2 112.0
REMARK 620 3 HIS A 279 NE2 86.9 88.8
REMARK 620 4 QVW A 501 O04 79.9 165.6 100.1
REMARK 620 5 QVW A 501 O05 161.6 86.1 97.2 81.7
REMARK 620 6 HOH A 622 O 73.2 93.4 159.3 82.2 103.4
REMARK 620 N 1 2 3 4 5
DBREF 7A1M A 1 349 UNP Q9NWT6 HIF1N_HUMAN 1 349
SEQRES 1 A 349 MET ALA ALA THR ALA ALA GLU ALA VAL ALA SER GLY SER
SEQRES 2 A 349 GLY GLU PRO ARG GLU GLU ALA GLY ALA LEU GLY PRO ALA
SEQRES 3 A 349 TRP ASP GLU SER GLN LEU ARG SER TYR SER PHE PRO THR
SEQRES 4 A 349 ARG PRO ILE PRO ARG LEU SER GLN SER ASP PRO ARG ALA
SEQRES 5 A 349 GLU GLU LEU ILE GLU ASN GLU GLU PRO VAL VAL LEU THR
SEQRES 6 A 349 ASP THR ASN LEU VAL TYR PRO ALA LEU LYS TRP ASP LEU
SEQRES 7 A 349 GLU TYR LEU GLN GLU ASN ILE GLY ASN GLY ASP PHE SER
SEQRES 8 A 349 VAL TYR SER ALA SER THR HIS LYS PHE LEU TYR TYR ASP
SEQRES 9 A 349 GLU LYS LYS MET ALA ASN PHE GLN ASN PHE LYS PRO ARG
SEQRES 10 A 349 SER ASN ARG GLU GLU MET LYS PHE HIS GLU PHE VAL GLU
SEQRES 11 A 349 LYS LEU GLN ASP ILE GLN GLN ARG GLY GLY GLU GLU ARG
SEQRES 12 A 349 LEU TYR LEU GLN GLN THR LEU ASN ASP THR VAL GLY ARG
SEQRES 13 A 349 LYS ILE VAL MET ASP PHE LEU GLY PHE ASN TRP ASN TRP
SEQRES 14 A 349 ILE ASN LYS GLN GLN GLY LYS ARG GLY TRP GLY GLN LEU
SEQRES 15 A 349 THR SER ASN LEU LEU LEU ILE GLY MET GLU GLY ASN VAL
SEQRES 16 A 349 THR PRO ALA HIS TYR ASP GLU GLN GLN ASN PHE PHE ALA
SEQRES 17 A 349 GLN ILE LYS GLY TYR LYS ARG CYS ILE LEU PHE PRO PRO
SEQRES 18 A 349 ASP GLN PHE GLU CYS LEU TYR PRO TYR PRO VAL HIS HIS
SEQRES 19 A 349 PRO CYS ASP ARG GLN SER GLN VAL ASP PHE ASP ASN PRO
SEQRES 20 A 349 ASP TYR GLU ARG PHE PRO ASN PHE GLN ASN VAL VAL GLY
SEQRES 21 A 349 TYR GLU THR VAL VAL GLY PRO GLY ASP VAL LEU TYR ILE
SEQRES 22 A 349 PRO MET TYR TRP TRP HIS HIS ILE GLU SER LEU LEU ASN
SEQRES 23 A 349 GLY GLY ILE THR ILE THR VAL ASN PHE TRP TYR LYS GLY
SEQRES 24 A 349 ALA PRO THR PRO LYS ARG ILE GLU TYR PRO LEU LYS ALA
SEQRES 25 A 349 HIS GLN LYS VAL ALA ILE MET ARG ASN ILE GLU LYS MET
SEQRES 26 A 349 LEU GLY GLU ALA LEU GLY ASN PRO GLN GLU VAL GLY PRO
SEQRES 27 A 349 LEU LEU ASN THR MET ILE LYS GLY ARG TYR ASN
HET ZN A 500 1
HET QVW A 501 23
HET SO4 A 502 5
HET SO4 A 503 5
HET SO4 A 504 5
HETNAM ZN ZINC ION
HETNAM QVW 3-PROPYL-2-OXOGLUTARATE
HETNAM SO4 SULFATE ION
HETSYN QVW (3~{S})-2-OXIDANYLIDENE-3-PROPYL-PENTANEDIOIC ACID
FORMUL 2 ZN ZN 2+
FORMUL 3 QVW C8 H12 O5
FORMUL 4 SO4 3(O4 S 2-)
FORMUL 7 HOH *62(H2 O)
HELIX 1 AA1 ASP A 28 LEU A 32 5 5
HELIX 2 AA2 ASP A 49 ASN A 58 1 10
HELIX 3 AA3 VAL A 70 TRP A 76 5 7
HELIX 4 AA4 ASP A 77 ILE A 85 1 9
HELIX 5 AA5 GLU A 105 ASN A 110 5 6
HELIX 6 AA6 LYS A 124 ARG A 138 1 15
HELIX 7 AA7 GLY A 155 GLY A 164 1 10
HELIX 8 AA8 ASN A 166 ARG A 177 1 12
HELIX 9 AA9 PRO A 220 ASP A 222 5 3
HELIX 10 AB1 GLN A 223 TYR A 228 1 6
HELIX 11 AB2 PHE A 252 VAL A 258 5 7
HELIX 12 AB3 LYS A 311 GLY A 331 1 21
HELIX 13 AB4 ASN A 332 GLN A 334 5 3
HELIX 14 AB5 GLU A 335 LYS A 345 1 11
SHEET 1 AA1 5 THR A 39 PRO A 41 0
SHEET 2 AA1 5 GLY A 260 VAL A 265 1 O GLU A 262 N ARG A 40
SHEET 3 AA1 5 LYS A 214 PHE A 219 -1 N LEU A 218 O TYR A 261
SHEET 4 AA1 5 TRP A 278 SER A 283 -1 O HIS A 280 N ILE A 217
SHEET 5 AA1 5 VAL A 195 HIS A 199 -1 N THR A 196 O ILE A 281
SHEET 1 AA2 9 ARG A 44 LEU A 45 0
SHEET 2 AA2 9 VAL A 62 LEU A 64 1 O VAL A 63 N LEU A 45
SHEET 3 AA2 9 VAL A 270 ILE A 273 -1 O VAL A 270 N LEU A 64
SHEET 4 AA2 9 GLN A 204 LYS A 211 -1 N ASN A 205 O ILE A 273
SHEET 5 AA2 9 THR A 290 TYR A 297 -1 O TYR A 297 N GLN A 204
SHEET 6 AA2 9 LEU A 186 GLY A 190 -1 N LEU A 188 O THR A 292
SHEET 7 AA2 9 ARG A 143 THR A 149 -1 N LEU A 146 O ILE A 189
SHEET 8 AA2 9 PHE A 90 ALA A 95 -1 N TYR A 93 O TYR A 145
SHEET 9 AA2 9 ASN A 119 MET A 123 -1 O GLU A 121 N VAL A 92
SHEET 1 AA3 6 ARG A 44 LEU A 45 0
SHEET 2 AA3 6 VAL A 62 LEU A 64 1 O VAL A 63 N LEU A 45
SHEET 3 AA3 6 VAL A 270 ILE A 273 -1 O VAL A 270 N LEU A 64
SHEET 4 AA3 6 GLN A 204 LYS A 211 -1 N ASN A 205 O ILE A 273
SHEET 5 AA3 6 THR A 290 TYR A 297 -1 O TYR A 297 N GLN A 204
SHEET 6 AA3 6 LEU A 182 SER A 184 -1 N THR A 183 O TRP A 296
LINK NE2 HIS A 199 ZN ZN A 500 1555 1555 2.18
LINK OD2 ASP A 201 ZN ZN A 500 1555 1555 2.00
LINK NE2 HIS A 279 ZN ZN A 500 1555 1555 2.21
LINK ZN ZN A 500 O04 QVW A 501 1555 1555 2.14
LINK ZN ZN A 500 O05 QVW A 501 1555 1555 1.99
LINK ZN ZN A 500 O HOH A 622 1555 1555 2.48
CISPEP 1 TYR A 308 PRO A 309 0 4.73
CRYST1 85.954 85.954 148.957 90.00 90.00 90.00 P 41 21 2 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.011634 0.000000 0.000000 0.00000
SCALE2 0.000000 0.011634 0.000000 0.00000
SCALE3 0.000000 0.000000 0.006713 0.00000