HEADER OXIDOREDUCTASE 13-AUG-20 7A1N TITLE FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH ZN(II), 3-METHYL-2- TITLE 2 OXOGLUTARATE, AND CONSENSUS ANKYRIN REPEAT DOMAIN (20-MER) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOXIA-INDUCIBLE FACTOR 1-ALPHA INHIBITOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FACTOR INHIBITING HIF-1,FIH-1,HYPOXIA-INDUCIBLE FACTOR COMPND 5 ASPARAGINE HYDROXYLASE; COMPND 6 EC: 1.14.11.30,1.14.11.-; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: CONSENSUS ANKYRIN REPEAT DOMAIN; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HIF1AN, FIH1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS HYPOXIA-INDUCIBLE FACTOR ASPARAGINE HYDROXYLASE, DIOXYGENASE, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.NAKASHIMA,L.BREWITZ,C.J.SCHOFIELD REVDAT 3 31-JAN-24 7A1N 1 REMARK REVDAT 2 22-DEC-21 7A1N 1 JRNL REVDAT 1 25-AUG-21 7A1N 0 JRNL AUTH Y.NAKASHIMA,L.BREWITZ,A.TUMBER,E.SALAH,C.J.SCHOFIELD JRNL TITL 2-OXOGLUTARATE DERIVATIVES CAN SELECTIVELY ENHANCE OR JRNL TITL 2 INHIBIT THE ACTIVITY OF HUMAN OXYGENASES. JRNL REF NAT COMMUN V. 12 6478 2021 JRNL REFN ESSN 2041-1723 JRNL PMID 34759269 JRNL DOI 10.1038/S41467-021-26673-2 REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.27 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 37686 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1885 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 56.2700 - 4.7200 1.00 2988 161 0.2293 0.2215 REMARK 3 2 4.7200 - 3.7500 1.00 2831 146 0.1686 0.2103 REMARK 3 3 3.7500 - 3.2800 1.00 2800 134 0.1955 0.2322 REMARK 3 4 3.2800 - 2.9800 1.00 2758 153 0.2102 0.2238 REMARK 3 5 2.9800 - 2.7600 1.00 2749 135 0.2229 0.2738 REMARK 3 6 2.7600 - 2.6000 1.00 2751 142 0.2190 0.2330 REMARK 3 7 2.6000 - 2.4700 1.00 2734 139 0.2243 0.2720 REMARK 3 8 2.4700 - 2.3600 1.00 2723 162 0.2254 0.2457 REMARK 3 9 2.3600 - 2.2700 1.00 2699 143 0.2437 0.2424 REMARK 3 10 2.2700 - 2.1900 1.00 2724 140 0.2677 0.2998 REMARK 3 11 2.1900 - 2.1200 1.00 2715 134 0.2909 0.3011 REMARK 3 12 2.1200 - 2.0600 1.00 2678 154 0.3040 0.3076 REMARK 3 13 2.0600 - 2.0100 0.98 2651 142 0.3359 0.3473 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.242 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.613 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 50.39 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 73.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 2955 REMARK 3 ANGLE : 0.541 4023 REMARK 3 CHIRALITY : 0.043 408 REMARK 3 PLANARITY : 0.004 528 REMARK 3 DIHEDRAL : 18.726 1075 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 20 THROUGH 95 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.9246 -21.8550 17.5484 REMARK 3 T TENSOR REMARK 3 T11: 0.4940 T22: 0.4176 REMARK 3 T33: 0.4668 T12: 0.0468 REMARK 3 T13: 0.1244 T23: 0.0132 REMARK 3 L TENSOR REMARK 3 L11: 1.5537 L22: 3.5405 REMARK 3 L33: 2.2776 L12: -0.4139 REMARK 3 L13: 0.3904 L23: 0.8091 REMARK 3 S TENSOR REMARK 3 S11: -0.0019 S12: 0.0438 S13: 0.1060 REMARK 3 S21: 0.2425 S22: -0.1371 S23: 0.3599 REMARK 3 S31: -0.0788 S32: -0.1944 S33: 0.1144 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 96 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.0421 -31.8295 -6.5489 REMARK 3 T TENSOR REMARK 3 T11: 0.7348 T22: 0.6792 REMARK 3 T33: 0.4992 T12: 0.0625 REMARK 3 T13: 0.0351 T23: -0.0680 REMARK 3 L TENSOR REMARK 3 L11: 7.9445 L22: 5.1739 REMARK 3 L33: 5.8648 L12: -3.1030 REMARK 3 L13: -2.1713 L23: 2.3779 REMARK 3 S TENSOR REMARK 3 S11: 0.0031 S12: 1.3201 S13: -0.1297 REMARK 3 S21: -0.7248 S22: -0.3471 S23: -0.2186 REMARK 3 S31: -0.1504 S32: 0.0273 S33: 0.2650 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 118 THROUGH 297 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.2517 -25.5978 8.4952 REMARK 3 T TENSOR REMARK 3 T11: 0.5595 T22: 0.4250 REMARK 3 T33: 0.4797 T12: 0.0405 REMARK 3 T13: 0.0442 T23: 0.0092 REMARK 3 L TENSOR REMARK 3 L11: 0.7910 L22: 2.0009 REMARK 3 L33: 1.4603 L12: -0.5914 REMARK 3 L13: -0.1129 L23: 0.6495 REMARK 3 S TENSOR REMARK 3 S11: 0.0419 S12: 0.1155 S13: 0.0477 REMARK 3 S21: -0.1580 S22: -0.0685 S23: 0.1728 REMARK 3 S31: -0.1609 S32: -0.1404 S33: 0.0339 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 298 THROUGH 349 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.3297 -40.9583 2.8769 REMARK 3 T TENSOR REMARK 3 T11: 0.5252 T22: 0.5240 REMARK 3 T33: 0.5040 T12: 0.0168 REMARK 3 T13: 0.0429 T23: -0.0130 REMARK 3 L TENSOR REMARK 3 L11: 1.3711 L22: 2.1904 REMARK 3 L33: 0.8966 L12: -1.3395 REMARK 3 L13: -0.7459 L23: 0.5406 REMARK 3 S TENSOR REMARK 3 S11: 0.0875 S12: 0.0582 S13: 0.1740 REMARK 3 S21: -0.0309 S22: 0.0255 S23: -0.1362 REMARK 3 S31: -0.1790 S32: 0.1213 S33: -0.1317 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 3 THROUGH 9 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.5646 -35.6180 6.8507 REMARK 3 T TENSOR REMARK 3 T11: 0.6491 T22: 0.7488 REMARK 3 T33: 0.7448 T12: -0.0210 REMARK 3 T13: -0.0766 T23: -0.1637 REMARK 3 L TENSOR REMARK 3 L11: 8.6513 L22: 2.8286 REMARK 3 L33: 7.2490 L12: -0.7465 REMARK 3 L13: -3.0953 L23: -2.2630 REMARK 3 S TENSOR REMARK 3 S11: 0.5238 S12: 0.0934 S13: 0.2213 REMARK 3 S21: 0.5594 S22: 0.7925 S23: -1.1971 REMARK 3 S31: 0.3057 S32: 1.2251 S33: -1.3629 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 10 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.2033 -25.4284 1.6063 REMARK 3 T TENSOR REMARK 3 T11: 0.7169 T22: 0.5816 REMARK 3 T33: 0.7524 T12: -0.0103 REMARK 3 T13: 0.0693 T23: 0.1312 REMARK 3 L TENSOR REMARK 3 L11: 3.3636 L22: 4.5030 REMARK 3 L33: 4.5854 L12: -0.6634 REMARK 3 L13: 0.9038 L23: 0.0580 REMARK 3 S TENSOR REMARK 3 S11: -0.3077 S12: 0.7127 S13: 0.7495 REMARK 3 S21: -0.9258 S22: -0.1883 S23: -0.1460 REMARK 3 S31: -0.3676 S32: 0.4242 S33: 0.4547 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7A1N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1292110542. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-NOV-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97950 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37759 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.010 REMARK 200 RESOLUTION RANGE LOW (A) : 74.370 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 26.30 REMARK 200 R MERGE (I) : 0.11200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.01 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 27.10 REMARK 200 R MERGE FOR SHELL (I) : 6.26900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1H2K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6M AMMONIUM SULPHATE, 6% PEG 400, REMARK 280 0.1M HEPES PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.91650 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 43.02600 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 43.02600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 36.95825 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 43.02600 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 43.02600 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 110.87475 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 43.02600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.02600 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 36.95825 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 43.02600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.02600 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 110.87475 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 73.91650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -172.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 THR A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 6 REMARK 465 GLU A 7 REMARK 465 ALA A 8 REMARK 465 VAL A 9 REMARK 465 ALA A 10 REMARK 465 SER A 11 REMARK 465 GLY A 12 REMARK 465 SER A 13 REMARK 465 GLY A 14 REMARK 465 GLU A 15 REMARK 465 PRO A 16 REMARK 465 ARG A 17 REMARK 465 GLU A 18 REMARK 465 GLU A 19 REMARK 465 HIS B 1 REMARK 465 LEU B 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 115 CG CD CE NZ REMARK 470 ARG A 156 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 157 CE NZ REMARK 470 LYS A 304 CG CD CE NZ REMARK 470 ARG A 305 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 307 CG CD OE1 OE2 REMARK 470 GLU B 3 CG CD OE1 OE2 REMARK 470 LYS B 20 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH11 ARG A 44 O HOH A 1104 1.59 REMARK 500 O HOH A 1182 O HOH A 1258 2.01 REMARK 500 O HOH A 1224 O HOH A 1239 2.03 REMARK 500 O HOH A 1105 O HOH A 1258 2.05 REMARK 500 O HOH A 1164 O HOH A 1207 2.05 REMARK 500 O1 SO4 A 1010 O HOH A 1101 2.06 REMARK 500 O HOH A 1205 O HOH A 1241 2.07 REMARK 500 O HOH A 1186 O HOH A 1230 2.08 REMARK 500 O4 SO4 A 1003 O HOH A 1102 2.09 REMARK 500 O HOH A 1217 O HOH A 1244 2.09 REMARK 500 O HOH A 1189 O HOH A 1240 2.13 REMARK 500 O HOH A 1169 O HOH B 109 2.14 REMARK 500 O HOH A 1219 O HOH A 1264 2.18 REMARK 500 O HOH A 1136 O HOH A 1230 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 323 HH22 ARG A 347 7645 1.57 REMARK 500 O HOH A 1150 O HOH A 1220 5545 2.03 REMARK 500 O HOH A 1150 O HOH A 1185 5545 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 66 41.09 -145.30 REMARK 500 PHE A 100 72.64 -100.68 REMARK 500 SER A 184 149.16 -171.96 REMARK 500 GLU A 202 32.54 -89.16 REMARK 500 ILE A 210 -52.27 -121.74 REMARK 500 ARG A 238 -8.86 80.50 REMARK 500 ASN A 246 77.45 -153.12 REMARK 500 TYR A 276 -13.64 78.39 REMARK 500 ALA B 13 31.45 -145.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1007 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 199 NE2 REMARK 620 2 ASP A 201 OD2 107.0 REMARK 620 3 HIS A 279 NE2 96.5 88.5 REMARK 620 4 ROQ A1008 O01 85.4 160.3 105.5 REMARK 620 5 ROQ A1008 O03 148.1 91.1 110.4 71.3 REMARK 620 N 1 2 3 4 DBREF 7A1N A 1 349 UNP Q9NWT6 HIF1N_HUMAN 1 349 DBREF 7A1N B 1 20 PDB 7A1N 7A1N 1 20 SEQRES 1 A 349 MET ALA ALA THR ALA ALA GLU ALA VAL ALA SER GLY SER SEQRES 2 A 349 GLY GLU PRO ARG GLU GLU ALA GLY ALA LEU GLY PRO ALA SEQRES 3 A 349 TRP ASP GLU SER GLN LEU ARG SER TYR SER PHE PRO THR SEQRES 4 A 349 ARG PRO ILE PRO ARG LEU SER GLN SER ASP PRO ARG ALA SEQRES 5 A 349 GLU GLU LEU ILE GLU ASN GLU GLU PRO VAL VAL LEU THR SEQRES 6 A 349 ASP THR ASN LEU VAL TYR PRO ALA LEU LYS TRP ASP LEU SEQRES 7 A 349 GLU TYR LEU GLN GLU ASN ILE GLY ASN GLY ASP PHE SER SEQRES 8 A 349 VAL TYR SER ALA SER THR HIS LYS PHE LEU TYR TYR ASP SEQRES 9 A 349 GLU LYS LYS MET ALA ASN PHE GLN ASN PHE LYS PRO ARG SEQRES 10 A 349 SER ASN ARG GLU GLU MET LYS PHE HIS GLU PHE VAL GLU SEQRES 11 A 349 LYS LEU GLN ASP ILE GLN GLN ARG GLY GLY GLU GLU ARG SEQRES 12 A 349 LEU TYR LEU GLN GLN THR LEU ASN ASP THR VAL GLY ARG SEQRES 13 A 349 LYS ILE VAL MET ASP PHE LEU GLY PHE ASN TRP ASN TRP SEQRES 14 A 349 ILE ASN LYS GLN GLN GLY LYS ARG GLY TRP GLY GLN LEU SEQRES 15 A 349 THR SER ASN LEU LEU LEU ILE GLY MET GLU GLY ASN VAL SEQRES 16 A 349 THR PRO ALA HIS TYR ASP GLU GLN GLN ASN PHE PHE ALA SEQRES 17 A 349 GLN ILE LYS GLY TYR LYS ARG CYS ILE LEU PHE PRO PRO SEQRES 18 A 349 ASP GLN PHE GLU CYS LEU TYR PRO TYR PRO VAL HIS HIS SEQRES 19 A 349 PRO CYS ASP ARG GLN SER GLN VAL ASP PHE ASP ASN PRO SEQRES 20 A 349 ASP TYR GLU ARG PHE PRO ASN PHE GLN ASN VAL VAL GLY SEQRES 21 A 349 TYR GLU THR VAL VAL GLY PRO GLY ASP VAL LEU TYR ILE SEQRES 22 A 349 PRO MET TYR TRP TRP HIS HIS ILE GLU SER LEU LEU ASN SEQRES 23 A 349 GLY GLY ILE THR ILE THR VAL ASN PHE TRP TYR LYS GLY SEQRES 24 A 349 ALA PRO THR PRO LYS ARG ILE GLU TYR PRO LEU LYS ALA SEQRES 25 A 349 HIS GLN LYS VAL ALA ILE MET ARG ASN ILE GLU LYS MET SEQRES 26 A 349 LEU GLY GLU ALA LEU GLY ASN PRO GLN GLU VAL GLY PRO SEQRES 27 A 349 LEU LEU ASN THR MET ILE LYS GLY ARG TYR ASN SEQRES 1 B 20 HIS LEU GLU VAL VAL LYS LEU LEU LEU GLU ALA GLY ALA SEQRES 2 B 20 ASP VAL ASN ALA GLN ASP LYS HET SO4 A1001 5 HET SO4 A1002 5 HET SO4 A1003 5 HET SO4 A1004 5 HET SO4 A1005 5 HET SO4 A1006 5 HET ZN A1007 1 HET ROQ A1008 17 HET SO4 A1009 5 HET SO4 A1010 5 HET SO4 A1011 5 HETNAM SO4 SULFATE ION HETNAM ZN ZINC ION HETNAM ROQ (3~{S})-3-METHYL-2-OXIDANYLIDENE-PENTANEDIOIC ACID FORMUL 3 SO4 9(O4 S 2-) FORMUL 9 ZN ZN 2+ FORMUL 10 ROQ C6 H8 O5 FORMUL 14 HOH *181(H2 O) HELIX 1 AA1 ASP A 28 LEU A 32 5 5 HELIX 2 AA2 ASP A 49 ASN A 58 1 10 HELIX 3 AA3 VAL A 70 TRP A 76 5 7 HELIX 4 AA4 ASP A 77 ILE A 85 1 9 HELIX 5 AA5 ASP A 104 GLN A 112 5 9 HELIX 6 AA6 LYS A 124 GLY A 139 1 16 HELIX 7 AA7 GLY A 155 GLY A 164 1 10 HELIX 8 AA8 ASN A 166 ARG A 177 1 12 HELIX 9 AA9 PRO A 220 ASP A 222 5 3 HELIX 10 AB1 GLN A 223 TYR A 228 1 6 HELIX 11 AB2 PHE A 252 VAL A 258 5 7 HELIX 12 AB3 LYS A 311 LEU A 330 1 20 HELIX 13 AB4 ASN A 332 GLN A 334 5 3 HELIX 14 AB5 GLU A 335 LYS A 345 1 11 HELIX 15 AB6 VAL B 4 GLU B 10 1 7 SHEET 1 AA1 5 THR A 39 PRO A 41 0 SHEET 2 AA1 5 GLY A 260 VAL A 265 1 O GLU A 262 N ARG A 40 SHEET 3 AA1 5 LYS A 214 PHE A 219 -1 N LEU A 218 O TYR A 261 SHEET 4 AA1 5 TRP A 278 SER A 283 -1 O HIS A 280 N ILE A 217 SHEET 5 AA1 5 VAL A 195 HIS A 199 -1 N THR A 196 O ILE A 281 SHEET 1 AA2 9 ARG A 44 LEU A 45 0 SHEET 2 AA2 9 VAL A 62 LEU A 64 1 O VAL A 63 N LEU A 45 SHEET 3 AA2 9 VAL A 270 ILE A 273 -1 O VAL A 270 N LEU A 64 SHEET 4 AA2 9 GLN A 204 LYS A 211 -1 N PHE A 207 O LEU A 271 SHEET 5 AA2 9 THR A 290 TYR A 297 -1 O ILE A 291 N ILE A 210 SHEET 6 AA2 9 LEU A 186 GLY A 190 -1 N LEU A 188 O THR A 292 SHEET 7 AA2 9 ARG A 143 THR A 149 -1 N GLN A 148 O LEU A 187 SHEET 8 AA2 9 PHE A 90 ALA A 95 -1 N TYR A 93 O TYR A 145 SHEET 9 AA2 9 SER A 118 MET A 123 -1 O MET A 123 N PHE A 90 SHEET 1 AA3 6 ARG A 44 LEU A 45 0 SHEET 2 AA3 6 VAL A 62 LEU A 64 1 O VAL A 63 N LEU A 45 SHEET 3 AA3 6 VAL A 270 ILE A 273 -1 O VAL A 270 N LEU A 64 SHEET 4 AA3 6 GLN A 204 LYS A 211 -1 N PHE A 207 O LEU A 271 SHEET 5 AA3 6 THR A 290 TYR A 297 -1 O ILE A 291 N ILE A 210 SHEET 6 AA3 6 LEU A 182 SER A 184 -1 N THR A 183 O TRP A 296 LINK NE2 HIS A 199 ZN ZN A1007 1555 1555 2.14 LINK OD2 ASP A 201 ZN ZN A1007 1555 1555 2.05 LINK NE2 HIS A 279 ZN ZN A1007 1555 1555 2.07 LINK ZN ZN A1007 O01 ROQ A1008 1555 1555 1.88 LINK ZN ZN A1007 O03 ROQ A1008 1555 1555 2.35 CISPEP 1 TYR A 308 PRO A 309 0 4.73 CRYST1 86.052 86.052 147.833 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011621 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011621 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006764 0.00000