HEADER OXIDOREDUCTASE 13-AUG-20 7A1O
TITLE FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH ZN(II), 4-ETHYL-2-
TITLE 2 OXOGLUTARATE, AND CONSENSUS ANKYRIN REPEAT DOMAIN (20-MER)
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: HYPOXIA-INDUCIBLE FACTOR 1-ALPHA INHIBITOR;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: FACTOR INHIBITING HIF-1,FIH-1,HYPOXIA-INDUCIBLE FACTOR
COMPND 5 ASPARAGINE HYDROXYLASE;
COMPND 6 EC: 1.14.11.30,1.14.11.-;
COMPND 7 ENGINEERED: YES;
COMPND 8 OTHER_DETAILS:
COMPND 9 MAATAAEAVASGSGEPREEAGALGPAWDESQLRSYSFPTRPIPRLSQSDPRAEELIENEEPVVLTDTNL
COMPND 10 VYPALKWDLEY LQENIGNGDFSVYSASTHKFLYYDEKKMANFQNFKPRSNREEMKFHEFVEKLQDIQQ
COMPND 11 RGGEERLYLQQTLNDTVGRKIVM
COMPND 12 DFLGFNWNWINKQQGKRGWGQLTSNLLLIGMEGNVTPAHYDEQQNFFAQIKGYKRCILFPPDQFECLYP
COMPND 13 YPVHHPCDRQS QVDFDNPDYERFPNFQNVVGYETVVGPGDVLYIPMYWWHHIESLLNGGITITVNFWY
COMPND 14 KGAPTPKRIEYPLKAHQKVAIMR NIEKMLGEALGNPQEVGPLLNTMIKGRYN (ZN)(SO4)(SO4)
COMPND 15 (SO4);
COMPND 16 MOL_ID: 2;
COMPND 17 MOLECULE: CONSENSUS ANKYRIN REPEAT DOMAIN;
COMPND 18 CHAIN: B;
COMPND 19 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: HIF1AN, FIH1;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 8 MOL_ID: 2;
SOURCE 9 SYNTHETIC: YES;
SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT;
SOURCE 11 ORGANISM_TAXID: 32630
KEYWDS HYPOXIA-INDUCIBLE FACTOR ASPARAGINE HYDROXYLASE, DIOXYGENASE,
KEYWDS 2 OXIDOREDUCTASE
EXPDTA X-RAY DIFFRACTION
AUTHOR Y.NAKASHIMA,L.BREWITZ,C.J.SCHOFIELD
REVDAT 3 31-JAN-24 7A1O 1 REMARK
REVDAT 2 22-DEC-21 7A1O 1 JRNL
REVDAT 1 25-AUG-21 7A1O 0
JRNL AUTH Y.NAKASHIMA,L.BREWITZ,A.TUMBER,E.SALAH,C.J.SCHOFIELD
JRNL TITL 2-OXOGLUTARATE DERIVATIVES CAN SELECTIVELY ENHANCE OR
JRNL TITL 2 INHIBIT THE ACTIVITY OF HUMAN OXYGENASES.
JRNL REF NAT COMMUN V. 12 6478 2021
JRNL REFN ESSN 2041-1723
JRNL PMID 34759269
JRNL DOI 10.1038/S41467-021-26673-2
REMARK 2
REMARK 2 RESOLUTION. 2.21 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX 1.17.1_3660
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.21
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 74.41
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330
REMARK 3 COMPLETENESS FOR RANGE (%) : 89.6
REMARK 3 NUMBER OF REFLECTIONS : 47454
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.212
REMARK 3 R VALUE (WORKING SET) : 0.210
REMARK 3 FREE R VALUE : 0.243
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.720
REMARK 3 FREE R VALUE TEST SET COUNT : 2238
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 74.4100 - 5.5700 1.00 3141 173 0.2058 0.2425
REMARK 3 2 5.5700 - 4.4200 1.00 3145 173 0.1601 0.1752
REMARK 3 3 4.4200 - 3.9200 1.00 2741 155 0.1518 0.1849
REMARK 3 4 3.8600 - 3.5100 0.88 2747 138 0.1905 0.2540
REMARK 3 5 3.5100 - 3.2600 1.00 3148 167 0.2136 0.2539
REMARK 3 6 3.2600 - 3.0700 1.00 3155 133 0.2313 0.3185
REMARK 3 7 3.0700 - 2.9100 1.00 3175 160 0.2580 0.3217
REMARK 3 8 2.9100 - 2.7900 1.00 3148 137 0.2670 0.2820
REMARK 3 9 2.7900 - 2.7000 1.00 2557 116 0.2827 0.3493
REMARK 3 10 2.6400 - 2.5900 0.99 1887 72 0.2966 0.2079
REMARK 3 11 2.5900 - 2.5100 1.00 3166 143 0.2817 0.3218
REMARK 3 12 2.5100 - 2.4300 1.00 3162 156 0.2882 0.2984
REMARK 3 13 2.4300 - 2.3700 1.00 3193 133 0.3067 0.3622
REMARK 3 14 2.3700 - 2.3100 1.00 3130 160 0.3339 0.3438
REMARK 3 15 2.3100 - 2.2700 0.98 2606 160 0.3501 0.3609
REMARK 3 16 2.2300 - 2.2100 0.77 1115 62 0.3425 0.4128
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.361
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.367
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 56.97
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 75.83
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.002 3049
REMARK 3 ANGLE : 0.518 4148
REMARK 3 CHIRALITY : 0.042 425
REMARK 3 PLANARITY : 0.004 551
REMARK 3 DIHEDRAL : 15.952 1113
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 9
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 31 )
REMARK 3 ORIGIN FOR THE GROUP (A): 6.8497 -31.1107 24.7263
REMARK 3 T TENSOR
REMARK 3 T11: 1.0803 T22: 0.7489
REMARK 3 T33: 1.0067 T12: -0.0134
REMARK 3 T13: 0.3190 T23: -0.0626
REMARK 3 L TENSOR
REMARK 3 L11: 0.9922 L22: 2.3346
REMARK 3 L33: 0.6970 L12: -0.8422
REMARK 3 L13: -0.5756 L23: 1.0720
REMARK 3 S TENSOR
REMARK 3 S11: -0.4554 S12: -0.0699 S13: -0.4409
REMARK 3 S21: 1.0373 S22: 0.0184 S23: 1.0172
REMARK 3 S31: 0.4624 S32: 0.1333 S33: 0.4212
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 49 )
REMARK 3 ORIGIN FOR THE GROUP (A): 16.2522 -32.6471 21.4790
REMARK 3 T TENSOR
REMARK 3 T11: 0.7474 T22: 0.5179
REMARK 3 T33: 0.5293 T12: 0.0231
REMARK 3 T13: 0.1769 T23: 0.0205
REMARK 3 L TENSOR
REMARK 3 L11: 0.7555 L22: 0.5575
REMARK 3 L33: 0.7324 L12: -0.1396
REMARK 3 L13: -0.1469 L23: -0.0347
REMARK 3 S TENSOR
REMARK 3 S11: -0.1698 S12: 0.2083 S13: 0.3041
REMARK 3 S21: 0.5367 S22: -0.0755 S23: 0.6325
REMARK 3 S31: 0.1388 S32: -0.0073 S33: 0.3266
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 50 THROUGH 124 )
REMARK 3 ORIGIN FOR THE GROUP (A): 19.0119 -21.4730 5.4570
REMARK 3 T TENSOR
REMARK 3 T11: 0.7145 T22: 0.5215
REMARK 3 T33: 0.5823 T12: 0.0837
REMARK 3 T13: 0.1100 T23: 0.0985
REMARK 3 L TENSOR
REMARK 3 L11: 2.1953 L22: 2.0872
REMARK 3 L33: 1.5437 L12: -0.8995
REMARK 3 L13: -0.4178 L23: 1.2269
REMARK 3 S TENSOR
REMARK 3 S11: 0.3308 S12: 0.4090 S13: 0.2342
REMARK 3 S21: -0.3464 S22: -0.1789 S23: -0.0338
REMARK 3 S31: -0.2481 S32: -0.2812 S33: -0.1104
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 125 THROUGH 149 )
REMARK 3 ORIGIN FOR THE GROUP (A): 6.6193 -18.0240 -1.5885
REMARK 3 T TENSOR
REMARK 3 T11: 0.9467 T22: 0.9144
REMARK 3 T33: 0.7269 T12: 0.2812
REMARK 3 T13: 0.0451 T23: 0.0920
REMARK 3 L TENSOR
REMARK 3 L11: 2.5253 L22: 3.8739
REMARK 3 L33: 2.9410 L12: 0.2967
REMARK 3 L13: 1.0918 L23: -0.4080
REMARK 3 S TENSOR
REMARK 3 S11: 0.1941 S12: 0.4152 S13: 0.2229
REMARK 3 S21: -0.6222 S22: -0.0822 S23: 0.4352
REMARK 3 S31: -0.2109 S32: -0.7608 S33: 0.1008
REMARK 3 TLS GROUP : 5
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 150 THROUGH 297 )
REMARK 3 ORIGIN FOR THE GROUP (A): 21.8236 -27.4019 10.7682
REMARK 3 T TENSOR
REMARK 3 T11: 0.5800 T22: 0.4731
REMARK 3 T33: 0.5084 T12: 0.0263
REMARK 3 T13: 0.0708 T23: 0.0366
REMARK 3 L TENSOR
REMARK 3 L11: 1.4402 L22: 3.0435
REMARK 3 L33: 1.6915 L12: -0.7555
REMARK 3 L13: -0.7367 L23: 1.3770
REMARK 3 S TENSOR
REMARK 3 S11: 0.0958 S12: 0.1339 S13: 0.1327
REMARK 3 S21: -0.0847 S22: 0.0462 S23: 0.1071
REMARK 3 S31: -0.1221 S32: -0.1448 S33: -0.1397
REMARK 3 TLS GROUP : 6
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 298 THROUGH 330 )
REMARK 3 ORIGIN FOR THE GROUP (A): 40.8614 -36.5078 7.5560
REMARK 3 T TENSOR
REMARK 3 T11: 0.5844 T22: 0.5423
REMARK 3 T33: 0.6004 T12: -0.0251
REMARK 3 T13: 0.0816 T23: -0.0842
REMARK 3 L TENSOR
REMARK 3 L11: 1.9660 L22: 2.4714
REMARK 3 L33: 1.6076 L12: -0.1978
REMARK 3 L13: -0.6210 L23: 0.2788
REMARK 3 S TENSOR
REMARK 3 S11: 0.1504 S12: -0.2872 S13: 0.3098
REMARK 3 S21: 0.0531 S22: 0.1877 S23: -0.3855
REMARK 3 S31: -0.2749 S32: 0.1360 S33: -0.3817
REMARK 3 TLS GROUP : 7
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 331 THROUGH 349 )
REMARK 3 ORIGIN FOR THE GROUP (A): 37.3870 -49.8297 -5.2471
REMARK 3 T TENSOR
REMARK 3 T11: 0.5492 T22: 0.6381
REMARK 3 T33: 0.4571 T12: 0.0164
REMARK 3 T13: 0.0367 T23: -0.0494
REMARK 3 L TENSOR
REMARK 3 L11: 1.8483 L22: 5.9992
REMARK 3 L33: 3.4971 L12: -0.9420
REMARK 3 L13: 0.6732 L23: -2.7714
REMARK 3 S TENSOR
REMARK 3 S11: 0.1297 S12: 0.1977 S13: 0.0553
REMARK 3 S21: -0.4386 S22: -0.1204 S23: 0.0087
REMARK 3 S31: 0.1595 S32: -0.0672 S33: -0.2103
REMARK 3 TLS GROUP : 8
REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 9 )
REMARK 3 ORIGIN FOR THE GROUP (A): 48.5127 -35.5506 6.8342
REMARK 3 T TENSOR
REMARK 3 T11: 0.6234 T22: 0.7143
REMARK 3 T33: 0.7756 T12: -0.1303
REMARK 3 T13: 0.0457 T23: -0.1394
REMARK 3 L TENSOR
REMARK 3 L11: 9.5005 L22: 0.5974
REMARK 3 L33: 5.4248 L12: 1.5333
REMARK 3 L13: 7.1754 L23: 1.1194
REMARK 3 S TENSOR
REMARK 3 S11: 0.0613 S12: 0.4249 S13: 0.3292
REMARK 3 S21: 0.0098 S22: -0.0085 S23: -0.5641
REMARK 3 S31: -0.0524 S32: 0.9374 S33: -0.0089
REMARK 3 TLS GROUP : 9
REMARK 3 SELECTION: CHAIN 'B' AND (RESID 10 THROUGH 20 )
REMARK 3 ORIGIN FOR THE GROUP (A): 31.3096 -25.5314 1.4097
REMARK 3 T TENSOR
REMARK 3 T11: 0.8861 T22: 0.6610
REMARK 3 T33: 0.7205 T12: -0.0528
REMARK 3 T13: 0.1043 T23: 0.0755
REMARK 3 L TENSOR
REMARK 3 L11: 4.4110 L22: 3.7810
REMARK 3 L33: 3.9889 L12: -1.6921
REMARK 3 L13: 2.1457 L23: -0.9381
REMARK 3 S TENSOR
REMARK 3 S11: -0.2676 S12: 1.2121 S13: 0.6401
REMARK 3 S21: -0.6193 S22: -0.0784 S23: -0.5203
REMARK 3 S31: -0.7089 S32: 0.7893 S33: 0.2681
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 7A1O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-AUG-20.
REMARK 100 THE DEPOSITION ID IS D_1292110546.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 30-NOV-19
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 7.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : DIAMOND
REMARK 200 BEAMLINE : I04
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.97950
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2
REMARK 200 DATA SCALING SOFTWARE : AUTOPROC
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47454
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.210
REMARK 200 RESOLUTION RANGE LOW (A) : 74.410
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 90.5
REMARK 200 DATA REDUNDANCY : 26.10
REMARK 200 R MERGE (I) : 0.15500
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.8000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.21
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25
REMARK 200 COMPLETENESS FOR SHELL (%) : 56.8
REMARK 200 DATA REDUNDANCY IN SHELL : 16.80
REMARK 200 R MERGE FOR SHELL (I) : 6.55600
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.500
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 1H2K
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 61.78
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.22
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6M AMMONIUM SULPHATE, 6% PEG 400,
REMARK 280 0.1M HEPES PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE
REMARK 280 277K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z+1/2
REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4
REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4
REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4
REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4
REMARK 290 7555 Y,X,-Z
REMARK 290 8555 -Y,-X,-Z+1/2
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.46700
REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 43.14400
REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 43.14400
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 36.73350
REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 43.14400
REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 43.14400
REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 110.20050
REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 43.14400
REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.14400
REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 36.73350
REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 43.14400
REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.14400
REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 110.20050
REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 73.46700
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 9250 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 31720 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -217.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 86.28800
REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 -86.28800
REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A 1
REMARK 465 ALA A 2
REMARK 465 HIS B 1
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 GLU A 7 CG CD OE1 OE2
REMARK 470 VAL A 9 CG1 CG2
REMARK 470 GLU A 15 CG CD OE1 OE2
REMARK 470 GLU A 29 CD OE1 OE2
REMARK 470 LYS A 115 CE NZ
REMARK 470 ARG A 156 CG CD NE CZ NH1 NH2
REMARK 470 LYS A 157 CE NZ
REMARK 470 LYS A 304 CG CD CE NZ
REMARK 470 ARG A 305 CG CD NE CZ NH1 NH2
REMARK 470 LYS A 311 CE NZ
REMARK 470 LEU B 2 CG CD1 CD2
REMARK 470 LYS B 20 CG CD CE NZ
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 OD1 ASP A 28 HG SER A 30 1.58
REMARK 500 O HOH A 686 O HOH A 687 1.96
REMARK 500 O HOH A 634 O HOH B 103 2.00
REMARK 500 O HOH A 641 O HOH A 681 2.02
REMARK 500 O HOH A 668 O HOH A 669 2.04
REMARK 500 O HOH A 615 O HOH A 684 2.06
REMARK 500 O HOH A 656 O HOH A 682 2.07
REMARK 500 O HOH A 643 O HOH A 672 2.14
REMARK 500 OD1 ASP A 28 OG SER A 30 2.19
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375
REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.
REMARK 500
REMARK 500 DISTANCE CUTOFF:
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE
REMARK 500 OE2 GLU A 323 HH22 ARG A 347 7645 1.56
REMARK 500 OH TYR A 71 OE1 GLU A 225 5555 2.01
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ASP A 66 47.68 -141.48
REMARK 500 PHE A 100 74.52 -107.22
REMARK 500 ASN A 151 -156.31 -129.59
REMARK 500 GLU A 202 35.35 -83.75
REMARK 500 ILE A 210 -55.82 -120.32
REMARK 500 CYS A 236 32.54 -92.50
REMARK 500 ARG A 238 -5.32 79.81
REMARK 500 TYR A 276 -13.70 77.65
REMARK 500 ALA B 13 29.94 -144.34
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN A 501 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HIS A 199 NE2
REMARK 620 2 ASP A 201 OD2 119.7
REMARK 620 3 HIS A 279 NE2 91.1 88.5
REMARK 620 4 QVT A 505 O05 85.2 155.1 92.6
REMARK 620 5 QVT A 505 O04 152.0 82.2 107.8 73.7
REMARK 620 N 1 2 3 4
DBREF 7A1O A 1 349 UNP Q9NWT6 HIF1N_HUMAN 1 349
DBREF 7A1O B 1 20 PDB 7A1O 7A1O 1 20
SEQRES 1 A 349 MET ALA ALA THR ALA ALA GLU ALA VAL ALA SER GLY SER
SEQRES 2 A 349 GLY GLU PRO ARG GLU GLU ALA GLY ALA LEU GLY PRO ALA
SEQRES 3 A 349 TRP ASP GLU SER GLN LEU ARG SER TYR SER PHE PRO THR
SEQRES 4 A 349 ARG PRO ILE PRO ARG LEU SER GLN SER ASP PRO ARG ALA
SEQRES 5 A 349 GLU GLU LEU ILE GLU ASN GLU GLU PRO VAL VAL LEU THR
SEQRES 6 A 349 ASP THR ASN LEU VAL TYR PRO ALA LEU LYS TRP ASP LEU
SEQRES 7 A 349 GLU TYR LEU GLN GLU ASN ILE GLY ASN GLY ASP PHE SER
SEQRES 8 A 349 VAL TYR SER ALA SER THR HIS LYS PHE LEU TYR TYR ASP
SEQRES 9 A 349 GLU LYS LYS MET ALA ASN PHE GLN ASN PHE LYS PRO ARG
SEQRES 10 A 349 SER ASN ARG GLU GLU MET LYS PHE HIS GLU PHE VAL GLU
SEQRES 11 A 349 LYS LEU GLN ASP ILE GLN GLN ARG GLY GLY GLU GLU ARG
SEQRES 12 A 349 LEU TYR LEU GLN GLN THR LEU ASN ASP THR VAL GLY ARG
SEQRES 13 A 349 LYS ILE VAL MET ASP PHE LEU GLY PHE ASN TRP ASN TRP
SEQRES 14 A 349 ILE ASN LYS GLN GLN GLY LYS ARG GLY TRP GLY GLN LEU
SEQRES 15 A 349 THR SER ASN LEU LEU LEU ILE GLY MET GLU GLY ASN VAL
SEQRES 16 A 349 THR PRO ALA HIS TYR ASP GLU GLN GLN ASN PHE PHE ALA
SEQRES 17 A 349 GLN ILE LYS GLY TYR LYS ARG CYS ILE LEU PHE PRO PRO
SEQRES 18 A 349 ASP GLN PHE GLU CYS LEU TYR PRO TYR PRO VAL HIS HIS
SEQRES 19 A 349 PRO CYS ASP ARG GLN SER GLN VAL ASP PHE ASP ASN PRO
SEQRES 20 A 349 ASP TYR GLU ARG PHE PRO ASN PHE GLN ASN VAL VAL GLY
SEQRES 21 A 349 TYR GLU THR VAL VAL GLY PRO GLY ASP VAL LEU TYR ILE
SEQRES 22 A 349 PRO MET TYR TRP TRP HIS HIS ILE GLU SER LEU LEU ASN
SEQRES 23 A 349 GLY GLY ILE THR ILE THR VAL ASN PHE TRP TYR LYS GLY
SEQRES 24 A 349 ALA PRO THR PRO LYS ARG ILE GLU TYR PRO LEU LYS ALA
SEQRES 25 A 349 HIS GLN LYS VAL ALA ILE MET ARG ASN ILE GLU LYS MET
SEQRES 26 A 349 LEU GLY GLU ALA LEU GLY ASN PRO GLN GLU VAL GLY PRO
SEQRES 27 A 349 LEU LEU ASN THR MET ILE LYS GLY ARG TYR ASN
SEQRES 1 B 20 HIS LEU GLU VAL VAL LYS LEU LEU LEU GLU ALA GLY ALA
SEQRES 2 B 20 ASP VAL ASN ALA GLN ASP LYS
HET ZN A 501 1
HET SO4 A 502 5
HET SO4 A 503 5
HET SO4 A 504 5
HET QVT A 505 20
HET SO4 A 506 5
HETNAM ZN ZINC ION
HETNAM SO4 SULFATE ION
HETNAM QVT 4-ETHYL-2-OXOGLUTARATE
HETSYN QVT (2~{S})-2-ETHYL-4-OXIDANYLIDENE-PENTANEDIOIC ACID
FORMUL 3 ZN ZN 2+
FORMUL 4 SO4 4(O4 S 2-)
FORMUL 7 QVT C7 H10 O5
FORMUL 9 HOH *90(H2 O)
HELIX 1 AA1 ALA A 3 ALA A 10 1 8
HELIX 2 AA2 ASP A 28 LEU A 32 5 5
HELIX 3 AA3 ASP A 49 ASN A 58 1 10
HELIX 4 AA4 VAL A 70 TRP A 76 5 7
HELIX 5 AA5 ASP A 77 ILE A 85 1 9
HELIX 6 AA6 ASP A 104 MET A 108 5 5
HELIX 7 AA7 PHE A 125 ARG A 138 1 14
HELIX 8 AA8 GLY A 155 GLY A 164 1 10
HELIX 9 AA9 ASN A 166 ARG A 177 1 12
HELIX 10 AB1 PRO A 220 ASP A 222 5 3
HELIX 11 AB2 GLN A 223 TYR A 228 1 6
HELIX 12 AB3 PHE A 252 VAL A 258 5 7
HELIX 13 AB4 LYS A 311 GLY A 331 1 21
HELIX 14 AB5 ASN A 332 GLN A 334 5 3
HELIX 15 AB6 GLU A 335 LYS A 345 1 11
HELIX 16 AB7 GLU B 3 GLU B 10 1 8
SHEET 1 AA1 5 THR A 39 PRO A 41 0
SHEET 2 AA1 5 GLY A 260 VAL A 265 1 O GLU A 262 N ARG A 40
SHEET 3 AA1 5 LYS A 214 PHE A 219 -1 N LEU A 218 O TYR A 261
SHEET 4 AA1 5 TRP A 278 SER A 283 -1 O HIS A 280 N ILE A 217
SHEET 5 AA1 5 VAL A 195 HIS A 199 -1 N THR A 196 O ILE A 281
SHEET 1 AA2 9 ARG A 44 LEU A 45 0
SHEET 2 AA2 9 VAL A 62 LEU A 64 1 O VAL A 63 N LEU A 45
SHEET 3 AA2 9 VAL A 270 ILE A 273 -1 O VAL A 270 N LEU A 64
SHEET 4 AA2 9 GLN A 204 LYS A 211 -1 N PHE A 207 O LEU A 271
SHEET 5 AA2 9 THR A 290 TYR A 297 -1 O ILE A 291 N ILE A 210
SHEET 6 AA2 9 LEU A 186 GLY A 190 -1 N LEU A 188 O THR A 292
SHEET 7 AA2 9 ARG A 143 THR A 149 -1 N LEU A 146 O ILE A 189
SHEET 8 AA2 9 ASP A 89 ALA A 95 -1 N TYR A 93 O TYR A 145
SHEET 9 AA2 9 SER A 118 LYS A 124 -1 O MET A 123 N PHE A 90
SHEET 1 AA3 6 ARG A 44 LEU A 45 0
SHEET 2 AA3 6 VAL A 62 LEU A 64 1 O VAL A 63 N LEU A 45
SHEET 3 AA3 6 VAL A 270 ILE A 273 -1 O VAL A 270 N LEU A 64
SHEET 4 AA3 6 GLN A 204 LYS A 211 -1 N PHE A 207 O LEU A 271
SHEET 5 AA3 6 THR A 290 TYR A 297 -1 O ILE A 291 N ILE A 210
SHEET 6 AA3 6 LEU A 182 SER A 184 -1 N THR A 183 O TRP A 296
LINK NE2 HIS A 199 ZN ZN A 501 1555 1555 2.13
LINK OD2 ASP A 201 ZN ZN A 501 1555 1555 2.11
LINK NE2 HIS A 279 ZN ZN A 501 1555 1555 2.14
LINK ZN ZN A 501 O05 QVT A 505 1555 1555 2.27
LINK ZN ZN A 501 O04 QVT A 505 1555 1555 2.15
CISPEP 1 TYR A 308 PRO A 309 0 3.30
CRYST1 86.288 86.288 146.934 90.00 90.00 90.00 P 41 21 2 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.011589 0.000000 0.000000 0.00000
SCALE2 0.000000 0.011589 0.000000 0.00000
SCALE3 0.000000 0.000000 0.006806 0.00000