HEADER OXIDOREDUCTASE 13-AUG-20 7A1Q TITLE FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH ZN(II), 3- TITLE 2 (CARBOXYCARBONYL)CYCLOPENTANE-1-CARBOXYLIC ACID, AND CONSENSUS TITLE 3 ANKYRIN REPEAT DOMAIN (20-MER) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOXIA-INDUCIBLE FACTOR 1-ALPHA INHIBITOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FACTOR INHIBITING HIF-1,FIH-1,HYPOXIA-INDUCIBLE FACTOR COMPND 5 ASPARAGINE HYDROXYLASE; COMPND 6 EC: 1.14.11.30,1.14.11.-; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: CONSENSUS ANKYRIN REPEAT DOMAIN; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HIF1AN, FIH1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS HYPOXIA-INDUCIBLE FACTOR ASPARAGINE HYDROXYLASE, DIOXYGENASE, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.NAKASHIMA,L.BREWITZ,C.J.SCHOFIELD REVDAT 3 31-JAN-24 7A1Q 1 REMARK REVDAT 2 22-DEC-21 7A1Q 1 JRNL REVDAT 1 25-AUG-21 7A1Q 0 JRNL AUTH Y.NAKASHIMA,L.BREWITZ,A.TUMBER,E.SALAH,C.J.SCHOFIELD JRNL TITL 2-OXOGLUTARATE DERIVATIVES CAN SELECTIVELY ENHANCE OR JRNL TITL 2 INHIBIT THE ACTIVITY OF HUMAN OXYGENASES. JRNL REF NAT COMMUN V. 12 6478 2021 JRNL REFN ESSN 2041-1723 JRNL PMID 34759269 JRNL DOI 10.1038/S41467-021-26673-2 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.12 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 56057 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.930 REMARK 3 FREE R VALUE TEST SET COUNT : 2766 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 56.1200 - 4.7500 1.00 2949 150 0.1946 0.2110 REMARK 3 2 4.7500 - 3.7700 1.00 2805 125 0.1381 0.1694 REMARK 3 3 3.7700 - 3.2900 1.00 2744 142 0.1633 0.1793 REMARK 3 4 3.2900 - 2.9900 1.00 2750 130 0.1781 0.2039 REMARK 3 5 2.9900 - 2.7800 1.00 2701 152 0.1858 0.1847 REMARK 3 6 2.7800 - 2.6100 1.00 2692 148 0.1812 0.2208 REMARK 3 7 2.6100 - 2.4800 1.00 2678 149 0.1694 0.1875 REMARK 3 8 2.4800 - 2.3700 1.00 2688 150 0.1673 0.1862 REMARK 3 9 2.3700 - 2.2800 1.00 2668 143 0.1736 0.1712 REMARK 3 10 2.2800 - 2.2000 1.00 2668 131 0.1656 0.2246 REMARK 3 11 2.2000 - 2.1400 1.00 2666 155 0.1797 0.2130 REMARK 3 12 2.1400 - 2.0700 1.00 2678 141 0.1881 0.2156 REMARK 3 13 2.0700 - 2.0200 1.00 2670 123 0.1976 0.2556 REMARK 3 14 2.0200 - 1.9700 1.00 2659 136 0.2144 0.2223 REMARK 3 15 1.9700 - 1.9300 1.00 2656 129 0.2218 0.2505 REMARK 3 16 1.9300 - 1.8800 1.00 2656 146 0.2676 0.2874 REMARK 3 17 1.8800 - 1.8500 1.00 2641 143 0.2891 0.3436 REMARK 3 18 1.8500 - 1.8100 1.00 2652 129 0.3281 0.3520 REMARK 3 19 1.8100 - 1.7800 0.99 2628 133 0.3760 0.4017 REMARK 3 20 1.7800 - 1.7500 0.77 2042 111 0.3908 0.4072 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.233 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.680 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.96 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3002 REMARK 3 ANGLE : 0.844 4086 REMARK 3 CHIRALITY : 0.052 417 REMARK 3 PLANARITY : 0.006 543 REMARK 3 DIHEDRAL : 18.566 1103 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 12 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.4286 -26.2352 23.8594 REMARK 3 T TENSOR REMARK 3 T11: 0.7465 T22: 0.6760 REMARK 3 T33: 0.8212 T12: 0.0682 REMARK 3 T13: 0.2709 T23: -0.0702 REMARK 3 L TENSOR REMARK 3 L11: 1.7027 L22: 5.6793 REMARK 3 L33: 9.6913 L12: 1.8574 REMARK 3 L13: -1.6030 L23: 3.7027 REMARK 3 S TENSOR REMARK 3 S11: -0.4117 S12: -1.2103 S13: 0.0884 REMARK 3 S21: 1.5815 S22: -0.3107 S23: 1.3079 REMARK 3 S31: 0.1367 S32: 0.7498 S33: 0.4920 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 84 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.5609 -22.1937 20.1444 REMARK 3 T TENSOR REMARK 3 T11: 0.5370 T22: 0.3659 REMARK 3 T33: 0.4469 T12: 0.0306 REMARK 3 T13: 0.1101 T23: 0.0134 REMARK 3 L TENSOR REMARK 3 L11: 1.5735 L22: 3.0771 REMARK 3 L33: 1.7696 L12: -0.2614 REMARK 3 L13: -0.2200 L23: 1.1396 REMARK 3 S TENSOR REMARK 3 S11: -0.0805 S12: -0.0455 S13: 0.0464 REMARK 3 S21: 0.3502 S22: 0.0002 S23: 0.1390 REMARK 3 S31: 0.0280 S32: -0.1106 S33: 0.0480 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 85 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.5536 -22.4707 -1.9953 REMARK 3 T TENSOR REMARK 3 T11: 0.6587 T22: 0.5591 REMARK 3 T33: 0.4835 T12: 0.0978 REMARK 3 T13: -0.0001 T23: 0.0208 REMARK 3 L TENSOR REMARK 3 L11: 2.6338 L22: 2.6725 REMARK 3 L33: 2.2062 L12: -0.9326 REMARK 3 L13: -0.3381 L23: 0.9333 REMARK 3 S TENSOR REMARK 3 S11: 0.0430 S12: 0.5101 S13: -0.0949 REMARK 3 S21: -0.3753 S22: -0.1188 S23: 0.0083 REMARK 3 S31: -0.4107 S32: -0.4067 S33: 0.0244 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 105 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.7199 -21.9134 -6.2222 REMARK 3 T TENSOR REMARK 3 T11: 0.7712 T22: 0.6693 REMARK 3 T33: 0.4371 T12: 0.1839 REMARK 3 T13: -0.1012 T23: 0.0205 REMARK 3 L TENSOR REMARK 3 L11: 4.6201 L22: 4.7543 REMARK 3 L33: 1.7002 L12: -2.3200 REMARK 3 L13: -0.9244 L23: 0.7428 REMARK 3 S TENSOR REMARK 3 S11: 0.4102 S12: 0.9205 S13: 0.0603 REMARK 3 S21: -0.9166 S22: -0.5283 S23: 0.3216 REMARK 3 S31: -0.6833 S32: -0.3776 S33: 0.1145 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 138 THROUGH 166 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.4288 -12.4954 5.6254 REMARK 3 T TENSOR REMARK 3 T11: 0.6657 T22: 0.4166 REMARK 3 T33: 0.5097 T12: 0.1143 REMARK 3 T13: 0.0620 T23: 0.0488 REMARK 3 L TENSOR REMARK 3 L11: 1.1286 L22: 2.8362 REMARK 3 L33: 3.4824 L12: 0.0954 REMARK 3 L13: 0.2665 L23: 1.3057 REMARK 3 S TENSOR REMARK 3 S11: 0.0082 S12: 0.2071 S13: 0.1077 REMARK 3 S21: -0.6618 S22: -0.0717 S23: 0.1168 REMARK 3 S31: -0.6758 S32: -0.2575 S33: 0.0934 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 167 THROUGH 190 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.5297 -16.7368 15.9195 REMARK 3 T TENSOR REMARK 3 T11: 0.4973 T22: 0.3492 REMARK 3 T33: 0.4547 T12: -0.0099 REMARK 3 T13: 0.0703 T23: -0.0074 REMARK 3 L TENSOR REMARK 3 L11: 4.6046 L22: 2.6937 REMARK 3 L33: 1.2553 L12: -0.7816 REMARK 3 L13: 0.5012 L23: 0.6663 REMARK 3 S TENSOR REMARK 3 S11: 0.0640 S12: -0.1542 S13: 0.3759 REMARK 3 S21: -0.0646 S22: 0.1333 S23: -0.3351 REMARK 3 S31: -0.2255 S32: 0.0604 S33: -0.2312 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 191 THROUGH 297 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.9274 -32.5240 10.0312 REMARK 3 T TENSOR REMARK 3 T11: 0.5033 T22: 0.3699 REMARK 3 T33: 0.4583 T12: 0.0141 REMARK 3 T13: 0.0736 T23: 0.0132 REMARK 3 L TENSOR REMARK 3 L11: 0.8359 L22: 2.3627 REMARK 3 L33: 1.4741 L12: -0.3953 REMARK 3 L13: -0.0130 L23: 0.7743 REMARK 3 S TENSOR REMARK 3 S11: 0.0405 S12: 0.0727 S13: 0.0064 REMARK 3 S21: 0.0398 S22: -0.0256 S23: 0.2471 REMARK 3 S31: -0.0395 S32: -0.1279 S33: -0.0170 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 298 THROUGH 329 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.6397 -36.2397 8.0484 REMARK 3 T TENSOR REMARK 3 T11: 0.4752 T22: 0.4496 REMARK 3 T33: 0.5168 T12: 0.0182 REMARK 3 T13: 0.0442 T23: -0.0503 REMARK 3 L TENSOR REMARK 3 L11: 2.1218 L22: 2.5808 REMARK 3 L33: 1.5449 L12: -0.4871 REMARK 3 L13: 0.0791 L23: 0.7818 REMARK 3 S TENSOR REMARK 3 S11: 0.0547 S12: -0.1874 S13: 0.1113 REMARK 3 S21: 0.0949 S22: 0.2333 S23: -0.2883 REMARK 3 S31: 0.0193 S32: 0.2969 S33: -0.2902 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 330 THROUGH 349 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.7068 -49.2989 -5.3306 REMARK 3 T TENSOR REMARK 3 T11: 0.4816 T22: 0.5205 REMARK 3 T33: 0.4115 T12: 0.0185 REMARK 3 T13: 0.0356 T23: -0.0825 REMARK 3 L TENSOR REMARK 3 L11: 2.6106 L22: 3.1180 REMARK 3 L33: 4.9536 L12: -1.3364 REMARK 3 L13: 1.1645 L23: -3.8767 REMARK 3 S TENSOR REMARK 3 S11: 0.0274 S12: 0.2923 S13: -0.0903 REMARK 3 S21: -0.2906 S22: 0.0912 S23: 0.1637 REMARK 3 S31: -0.0381 S32: -0.1575 S33: -0.1066 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 3 THROUGH 9 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.5625 -35.6531 6.8693 REMARK 3 T TENSOR REMARK 3 T11: 0.5727 T22: 0.5330 REMARK 3 T33: 0.7136 T12: -0.0167 REMARK 3 T13: -0.0134 T23: -0.1218 REMARK 3 L TENSOR REMARK 3 L11: 2.0848 L22: 9.7424 REMARK 3 L33: 6.8255 L12: 1.8787 REMARK 3 L13: -0.0192 L23: -4.5041 REMARK 3 S TENSOR REMARK 3 S11: 0.4796 S12: 0.2159 S13: 0.5512 REMARK 3 S21: 0.6082 S22: -0.0138 S23: -0.9983 REMARK 3 S31: -0.1430 S32: 0.7029 S33: -0.4833 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 10 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.1939 -25.2919 1.6451 REMARK 3 T TENSOR REMARK 3 T11: 0.5877 T22: 0.3923 REMARK 3 T33: 0.5351 T12: -0.0461 REMARK 3 T13: 0.1062 T23: 0.0753 REMARK 3 L TENSOR REMARK 3 L11: 7.5664 L22: 8.1777 REMARK 3 L33: 6.5860 L12: -5.3473 REMARK 3 L13: 3.8629 L23: -1.4519 REMARK 3 S TENSOR REMARK 3 S11: -0.4411 S12: 0.9272 S13: 1.0374 REMARK 3 S21: -0.6334 S22: -0.0149 S23: -0.6191 REMARK 3 S31: -0.6755 S32: 0.2680 S33: 0.4973 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7A1Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1292110543. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-NOV-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97950 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56748 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 56.122 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 26.80 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 28.10 REMARK 200 R MERGE FOR SHELL (I) : 8.13800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1H2K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6M AMMONIUM SULPHATE, 6% PEG 400, REMARK 280 0.1M HEPES PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.08850 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 42.98400 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 42.98400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.04425 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 42.98400 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 42.98400 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 111.13275 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 42.98400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 42.98400 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 37.04425 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 42.98400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 42.98400 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 111.13275 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 74.08850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -139.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 85.96800 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 -85.96800 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 THR A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 6 REMARK 465 GLU A 7 REMARK 465 ALA A 8 REMARK 465 VAL A 9 REMARK 465 ALA A 10 REMARK 465 SER A 11 REMARK 465 HIS B 1 REMARK 465 LEU B 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 15 CG CD OE1 OE2 REMARK 470 GLU A 19 OE1 OE2 REMARK 470 LYS A 115 CG CD CE NZ REMARK 470 GLN A 137 CD OE1 NE2 REMARK 470 ARG A 156 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 304 CG CD CE NZ REMARK 470 ARG A 305 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 307 CG CD OE1 OE2 REMARK 470 GLU B 3 CG CD OE1 OE2 REMARK 470 LYS B 20 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 707 O HOH A 747 1.89 REMARK 500 O HOH A 748 O HOH A 750 2.02 REMARK 500 O HOH A 664 O HOH A 760 2.04 REMARK 500 O HOH A 670 O HOH A 751 2.04 REMARK 500 O HOH A 739 O HOH A 741 2.05 REMARK 500 O HOH A 714 O HOH A 738 2.06 REMARK 500 O HOH A 695 O HOH A 755 2.07 REMARK 500 O HOH A 726 O HOH B 104 2.08 REMARK 500 O HOH A 758 O HOH A 773 2.17 REMARK 500 O HOH A 705 O HOH A 772 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 323 HH22 ARG A 347 7645 1.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 66 37.76 -143.31 REMARK 500 PHE A 100 72.90 -102.11 REMARK 500 GLU A 202 33.67 -94.43 REMARK 500 ASP A 237 134.12 -39.00 REMARK 500 ARG A 238 -7.06 77.58 REMARK 500 ASN A 246 75.80 -155.24 REMARK 500 TYR A 276 -8.96 78.16 REMARK 500 ASN A 332 118.69 -163.65 REMARK 500 ALA B 13 24.67 -141.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 199 NE2 REMARK 620 2 ASP A 201 OD2 114.8 REMARK 620 3 HIS A 279 NE2 96.4 91.1 REMARK 620 4 QVQ A 505 O05 84.9 133.8 129.7 REMARK 620 5 QVQ A 505 O03 163.4 79.6 91.3 78.8 REMARK 620 N 1 2 3 4 DBREF 7A1Q A 1 349 UNP Q9NWT6 HIF1N_HUMAN 1 349 DBREF 7A1Q B 1 20 PDB 7A1Q 7A1Q 1 20 SEQRES 1 A 349 MET ALA ALA THR ALA ALA GLU ALA VAL ALA SER GLY SER SEQRES 2 A 349 GLY GLU PRO ARG GLU GLU ALA GLY ALA LEU GLY PRO ALA SEQRES 3 A 349 TRP ASP GLU SER GLN LEU ARG SER TYR SER PHE PRO THR SEQRES 4 A 349 ARG PRO ILE PRO ARG LEU SER GLN SER ASP PRO ARG ALA SEQRES 5 A 349 GLU GLU LEU ILE GLU ASN GLU GLU PRO VAL VAL LEU THR SEQRES 6 A 349 ASP THR ASN LEU VAL TYR PRO ALA LEU LYS TRP ASP LEU SEQRES 7 A 349 GLU TYR LEU GLN GLU ASN ILE GLY ASN GLY ASP PHE SER SEQRES 8 A 349 VAL TYR SER ALA SER THR HIS LYS PHE LEU TYR TYR ASP SEQRES 9 A 349 GLU LYS LYS MET ALA ASN PHE GLN ASN PHE LYS PRO ARG SEQRES 10 A 349 SER ASN ARG GLU GLU MET LYS PHE HIS GLU PHE VAL GLU SEQRES 11 A 349 LYS LEU GLN ASP ILE GLN GLN ARG GLY GLY GLU GLU ARG SEQRES 12 A 349 LEU TYR LEU GLN GLN THR LEU ASN ASP THR VAL GLY ARG SEQRES 13 A 349 LYS ILE VAL MET ASP PHE LEU GLY PHE ASN TRP ASN TRP SEQRES 14 A 349 ILE ASN LYS GLN GLN GLY LYS ARG GLY TRP GLY GLN LEU SEQRES 15 A 349 THR SER ASN LEU LEU LEU ILE GLY MET GLU GLY ASN VAL SEQRES 16 A 349 THR PRO ALA HIS TYR ASP GLU GLN GLN ASN PHE PHE ALA SEQRES 17 A 349 GLN ILE LYS GLY TYR LYS ARG CYS ILE LEU PHE PRO PRO SEQRES 18 A 349 ASP GLN PHE GLU CYS LEU TYR PRO TYR PRO VAL HIS HIS SEQRES 19 A 349 PRO CYS ASP ARG GLN SER GLN VAL ASP PHE ASP ASN PRO SEQRES 20 A 349 ASP TYR GLU ARG PHE PRO ASN PHE GLN ASN VAL VAL GLY SEQRES 21 A 349 TYR GLU THR VAL VAL GLY PRO GLY ASP VAL LEU TYR ILE SEQRES 22 A 349 PRO MET TYR TRP TRP HIS HIS ILE GLU SER LEU LEU ASN SEQRES 23 A 349 GLY GLY ILE THR ILE THR VAL ASN PHE TRP TYR LYS GLY SEQRES 24 A 349 ALA PRO THR PRO LYS ARG ILE GLU TYR PRO LEU LYS ALA SEQRES 25 A 349 HIS GLN LYS VAL ALA ILE MET ARG ASN ILE GLU LYS MET SEQRES 26 A 349 LEU GLY GLU ALA LEU GLY ASN PRO GLN GLU VAL GLY PRO SEQRES 27 A 349 LEU LEU ASN THR MET ILE LYS GLY ARG TYR ASN SEQRES 1 B 20 HIS LEU GLU VAL VAL LYS LEU LEU LEU GLU ALA GLY ALA SEQRES 2 B 20 ASP VAL ASN ALA GLN ASP LYS HET ZN A 501 1 HET SO4 A 502 5 HET SO4 A 503 5 HET SO4 A 504 5 HET QVQ A 505 21 HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETNAM QVQ 3-(CARBOXYCARBONYL)CYCLOPENTANE-1-CARBOXYLIC ACID HETSYN QVQ (1~{R},3~{S})-3-(CARBOXYCARBONYL)CYCLOPENTANE-1- HETSYN 2 QVQ CARBOXYLIC ACID FORMUL 3 ZN ZN 2+ FORMUL 4 SO4 3(O4 S 2-) FORMUL 7 QVQ C8 H10 O5 FORMUL 8 HOH *185(H2 O) HELIX 1 AA1 GLU A 19 LEU A 23 5 5 HELIX 2 AA2 ASP A 28 LEU A 32 5 5 HELIX 3 AA3 ASP A 49 ASN A 58 1 10 HELIX 4 AA4 VAL A 70 TRP A 76 5 7 HELIX 5 AA5 ASP A 77 ILE A 85 1 9 HELIX 6 AA6 ASP A 104 PHE A 111 5 8 HELIX 7 AA7 LYS A 124 GLY A 139 1 16 HELIX 8 AA8 GLY A 155 GLY A 164 1 10 HELIX 9 AA9 ASN A 166 GLY A 178 1 13 HELIX 10 AB1 PRO A 220 ASP A 222 5 3 HELIX 11 AB2 GLN A 223 TYR A 228 1 6 HELIX 12 AB3 PHE A 252 VAL A 258 5 7 HELIX 13 AB4 LYS A 311 GLY A 331 1 21 HELIX 14 AB5 ASN A 332 GLN A 334 5 3 HELIX 15 AB6 GLU A 335 LYS A 345 1 11 HELIX 16 AB7 VAL B 4 GLU B 10 1 7 SHEET 1 AA1 5 THR A 39 PRO A 41 0 SHEET 2 AA1 5 GLY A 260 VAL A 265 1 O GLU A 262 N ARG A 40 SHEET 3 AA1 5 LYS A 214 PHE A 219 -1 N LEU A 218 O TYR A 261 SHEET 4 AA1 5 TRP A 278 SER A 283 -1 O HIS A 280 N ILE A 217 SHEET 5 AA1 5 VAL A 195 HIS A 199 -1 N THR A 196 O ILE A 281 SHEET 1 AA2 9 ARG A 44 LEU A 45 0 SHEET 2 AA2 9 VAL A 62 LEU A 64 1 O VAL A 63 N LEU A 45 SHEET 3 AA2 9 VAL A 270 ILE A 273 -1 O VAL A 270 N LEU A 64 SHEET 4 AA2 9 GLN A 204 LYS A 211 -1 N PHE A 207 O LEU A 271 SHEET 5 AA2 9 THR A 290 TYR A 297 -1 O TYR A 297 N GLN A 204 SHEET 6 AA2 9 LEU A 186 GLY A 190 -1 N LEU A 188 O THR A 292 SHEET 7 AA2 9 ARG A 143 THR A 149 -1 N GLN A 148 O LEU A 187 SHEET 8 AA2 9 PHE A 90 ALA A 95 -1 N TYR A 93 O TYR A 145 SHEET 9 AA2 9 SER A 118 MET A 123 -1 O MET A 123 N PHE A 90 SHEET 1 AA3 6 ARG A 44 LEU A 45 0 SHEET 2 AA3 6 VAL A 62 LEU A 64 1 O VAL A 63 N LEU A 45 SHEET 3 AA3 6 VAL A 270 ILE A 273 -1 O VAL A 270 N LEU A 64 SHEET 4 AA3 6 GLN A 204 LYS A 211 -1 N PHE A 207 O LEU A 271 SHEET 5 AA3 6 THR A 290 TYR A 297 -1 O TYR A 297 N GLN A 204 SHEET 6 AA3 6 LEU A 182 SER A 184 -1 N THR A 183 O TRP A 296 LINK NE2 HIS A 199 ZN ZN A 501 1555 1555 2.07 LINK OD2 ASP A 201 ZN ZN A 501 1555 1555 1.96 LINK NE2 HIS A 279 ZN ZN A 501 1555 1555 2.10 LINK ZN ZN A 501 O05 QVQ A 505 1555 1555 1.95 LINK ZN ZN A 501 O03 QVQ A 505 1555 1555 2.08 CISPEP 1 TYR A 308 PRO A 309 0 -1.73 CRYST1 85.968 85.968 148.177 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011632 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011632 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006749 0.00000