HEADER OXIDOREDUCTASE 13-AUG-20 7A1Q
TITLE FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH ZN(II), 3-
TITLE 2 (CARBOXYCARBONYL)CYCLOPENTANE-1-CARBOXYLIC ACID, AND CONSENSUS
TITLE 3 ANKYRIN REPEAT DOMAIN (20-MER)
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: HYPOXIA-INDUCIBLE FACTOR 1-ALPHA INHIBITOR;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: FACTOR INHIBITING HIF-1,FIH-1,HYPOXIA-INDUCIBLE FACTOR
COMPND 5 ASPARAGINE HYDROXYLASE;
COMPND 6 EC: 1.14.11.30,1.14.11.-;
COMPND 7 ENGINEERED: YES;
COMPND 8 MOL_ID: 2;
COMPND 9 MOLECULE: CONSENSUS ANKYRIN REPEAT DOMAIN;
COMPND 10 CHAIN: B;
COMPND 11 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: HIF1AN, FIH1;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 8 MOL_ID: 2;
SOURCE 9 SYNTHETIC: YES;
SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT;
SOURCE 11 ORGANISM_TAXID: 32630
KEYWDS HYPOXIA-INDUCIBLE FACTOR ASPARAGINE HYDROXYLASE, DIOXYGENASE,
KEYWDS 2 OXIDOREDUCTASE
EXPDTA X-RAY DIFFRACTION
AUTHOR Y.NAKASHIMA,L.BREWITZ,C.J.SCHOFIELD
REVDAT 3 31-JAN-24 7A1Q 1 REMARK
REVDAT 2 22-DEC-21 7A1Q 1 JRNL
REVDAT 1 25-AUG-21 7A1Q 0
JRNL AUTH Y.NAKASHIMA,L.BREWITZ,A.TUMBER,E.SALAH,C.J.SCHOFIELD
JRNL TITL 2-OXOGLUTARATE DERIVATIVES CAN SELECTIVELY ENHANCE OR
JRNL TITL 2 INHIBIT THE ACTIVITY OF HUMAN OXYGENASES.
JRNL REF NAT COMMUN V. 12 6478 2021
JRNL REFN ESSN 2041-1723
JRNL PMID 34759269
JRNL DOI 10.1038/S41467-021-26673-2
REMARK 2
REMARK 2 RESOLUTION. 1.75 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX 1.17.1_3660
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.12
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340
REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8
REMARK 3 NUMBER OF REFLECTIONS : 56057
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.178
REMARK 3 R VALUE (WORKING SET) : 0.177
REMARK 3 FREE R VALUE : 0.200
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.930
REMARK 3 FREE R VALUE TEST SET COUNT : 2766
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 56.1200 - 4.7500 1.00 2949 150 0.1946 0.2110
REMARK 3 2 4.7500 - 3.7700 1.00 2805 125 0.1381 0.1694
REMARK 3 3 3.7700 - 3.2900 1.00 2744 142 0.1633 0.1793
REMARK 3 4 3.2900 - 2.9900 1.00 2750 130 0.1781 0.2039
REMARK 3 5 2.9900 - 2.7800 1.00 2701 152 0.1858 0.1847
REMARK 3 6 2.7800 - 2.6100 1.00 2692 148 0.1812 0.2208
REMARK 3 7 2.6100 - 2.4800 1.00 2678 149 0.1694 0.1875
REMARK 3 8 2.4800 - 2.3700 1.00 2688 150 0.1673 0.1862
REMARK 3 9 2.3700 - 2.2800 1.00 2668 143 0.1736 0.1712
REMARK 3 10 2.2800 - 2.2000 1.00 2668 131 0.1656 0.2246
REMARK 3 11 2.2000 - 2.1400 1.00 2666 155 0.1797 0.2130
REMARK 3 12 2.1400 - 2.0700 1.00 2678 141 0.1881 0.2156
REMARK 3 13 2.0700 - 2.0200 1.00 2670 123 0.1976 0.2556
REMARK 3 14 2.0200 - 1.9700 1.00 2659 136 0.2144 0.2223
REMARK 3 15 1.9700 - 1.9300 1.00 2656 129 0.2218 0.2505
REMARK 3 16 1.9300 - 1.8800 1.00 2656 146 0.2676 0.2874
REMARK 3 17 1.8800 - 1.8500 1.00 2641 143 0.2891 0.3436
REMARK 3 18 1.8500 - 1.8100 1.00 2652 129 0.3281 0.3520
REMARK 3 19 1.8100 - 1.7800 0.99 2628 133 0.3760 0.4017
REMARK 3 20 1.7800 - 1.7500 0.77 2042 111 0.3908 0.4072
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.233
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.680
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 42.96
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.11
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.005 3002
REMARK 3 ANGLE : 0.844 4086
REMARK 3 CHIRALITY : 0.052 417
REMARK 3 PLANARITY : 0.006 543
REMARK 3 DIHEDRAL : 18.566 1103
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 11
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 12 THROUGH 31 )
REMARK 3 ORIGIN FOR THE GROUP (A): 4.4286 -26.2352 23.8594
REMARK 3 T TENSOR
REMARK 3 T11: 0.7465 T22: 0.6760
REMARK 3 T33: 0.8212 T12: 0.0682
REMARK 3 T13: 0.2709 T23: -0.0702
REMARK 3 L TENSOR
REMARK 3 L11: 1.7027 L22: 5.6793
REMARK 3 L33: 9.6913 L12: 1.8574
REMARK 3 L13: -1.6030 L23: 3.7027
REMARK 3 S TENSOR
REMARK 3 S11: -0.4117 S12: -1.2103 S13: 0.0884
REMARK 3 S21: 1.5815 S22: -0.3107 S23: 1.3079
REMARK 3 S31: 0.1367 S32: 0.7498 S33: 0.4920
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 84 )
REMARK 3 ORIGIN FOR THE GROUP (A): 18.5609 -22.1937 20.1444
REMARK 3 T TENSOR
REMARK 3 T11: 0.5370 T22: 0.3659
REMARK 3 T33: 0.4469 T12: 0.0306
REMARK 3 T13: 0.1101 T23: 0.0134
REMARK 3 L TENSOR
REMARK 3 L11: 1.5735 L22: 3.0771
REMARK 3 L33: 1.7696 L12: -0.2614
REMARK 3 L13: -0.2200 L23: 1.1396
REMARK 3 S TENSOR
REMARK 3 S11: -0.0805 S12: -0.0455 S13: 0.0464
REMARK 3 S21: 0.3502 S22: 0.0002 S23: 0.1390
REMARK 3 S31: 0.0280 S32: -0.1106 S33: 0.0480
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 85 THROUGH 104 )
REMARK 3 ORIGIN FOR THE GROUP (A): 15.5536 -22.4707 -1.9953
REMARK 3 T TENSOR
REMARK 3 T11: 0.6587 T22: 0.5591
REMARK 3 T33: 0.4835 T12: 0.0978
REMARK 3 T13: -0.0001 T23: 0.0208
REMARK 3 L TENSOR
REMARK 3 L11: 2.6338 L22: 2.6725
REMARK 3 L33: 2.2062 L12: -0.9326
REMARK 3 L13: -0.3381 L23: 0.9333
REMARK 3 S TENSOR
REMARK 3 S11: 0.0430 S12: 0.5101 S13: -0.0949
REMARK 3 S21: -0.3753 S22: -0.1188 S23: 0.0083
REMARK 3 S31: -0.4107 S32: -0.4067 S33: 0.0244
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 105 THROUGH 137 )
REMARK 3 ORIGIN FOR THE GROUP (A): 13.7199 -21.9134 -6.2222
REMARK 3 T TENSOR
REMARK 3 T11: 0.7712 T22: 0.6693
REMARK 3 T33: 0.4371 T12: 0.1839
REMARK 3 T13: -0.1012 T23: 0.0205
REMARK 3 L TENSOR
REMARK 3 L11: 4.6201 L22: 4.7543
REMARK 3 L33: 1.7002 L12: -2.3200
REMARK 3 L13: -0.9244 L23: 0.7428
REMARK 3 S TENSOR
REMARK 3 S11: 0.4102 S12: 0.9205 S13: 0.0603
REMARK 3 S21: -0.9166 S22: -0.5283 S23: 0.3216
REMARK 3 S31: -0.6833 S32: -0.3776 S33: 0.1145
REMARK 3 TLS GROUP : 5
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 138 THROUGH 166 )
REMARK 3 ORIGIN FOR THE GROUP (A): 16.4288 -12.4954 5.6254
REMARK 3 T TENSOR
REMARK 3 T11: 0.6657 T22: 0.4166
REMARK 3 T33: 0.5097 T12: 0.1143
REMARK 3 T13: 0.0620 T23: 0.0488
REMARK 3 L TENSOR
REMARK 3 L11: 1.1286 L22: 2.8362
REMARK 3 L33: 3.4824 L12: 0.0954
REMARK 3 L13: 0.2665 L23: 1.3057
REMARK 3 S TENSOR
REMARK 3 S11: 0.0082 S12: 0.2071 S13: 0.1077
REMARK 3 S21: -0.6618 S22: -0.0717 S23: 0.1168
REMARK 3 S31: -0.6758 S32: -0.2575 S33: 0.0934
REMARK 3 TLS GROUP : 6
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 167 THROUGH 190 )
REMARK 3 ORIGIN FOR THE GROUP (A): 29.5297 -16.7368 15.9195
REMARK 3 T TENSOR
REMARK 3 T11: 0.4973 T22: 0.3492
REMARK 3 T33: 0.4547 T12: -0.0099
REMARK 3 T13: 0.0703 T23: -0.0074
REMARK 3 L TENSOR
REMARK 3 L11: 4.6046 L22: 2.6937
REMARK 3 L33: 1.2553 L12: -0.7816
REMARK 3 L13: 0.5012 L23: 0.6663
REMARK 3 S TENSOR
REMARK 3 S11: 0.0640 S12: -0.1542 S13: 0.3759
REMARK 3 S21: -0.0646 S22: 0.1333 S23: -0.3351
REMARK 3 S31: -0.2255 S32: 0.0604 S33: -0.2312
REMARK 3 TLS GROUP : 7
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 191 THROUGH 297 )
REMARK 3 ORIGIN FOR THE GROUP (A): 19.9274 -32.5240 10.0312
REMARK 3 T TENSOR
REMARK 3 T11: 0.5033 T22: 0.3699
REMARK 3 T33: 0.4583 T12: 0.0141
REMARK 3 T13: 0.0736 T23: 0.0132
REMARK 3 L TENSOR
REMARK 3 L11: 0.8359 L22: 2.3627
REMARK 3 L33: 1.4741 L12: -0.3953
REMARK 3 L13: -0.0130 L23: 0.7743
REMARK 3 S TENSOR
REMARK 3 S11: 0.0405 S12: 0.0727 S13: 0.0064
REMARK 3 S21: 0.0398 S22: -0.0256 S23: 0.2471
REMARK 3 S31: -0.0395 S32: -0.1279 S33: -0.0170
REMARK 3 TLS GROUP : 8
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 298 THROUGH 329 )
REMARK 3 ORIGIN FOR THE GROUP (A): 40.6397 -36.2397 8.0484
REMARK 3 T TENSOR
REMARK 3 T11: 0.4752 T22: 0.4496
REMARK 3 T33: 0.5168 T12: 0.0182
REMARK 3 T13: 0.0442 T23: -0.0503
REMARK 3 L TENSOR
REMARK 3 L11: 2.1218 L22: 2.5808
REMARK 3 L33: 1.5449 L12: -0.4871
REMARK 3 L13: 0.0791 L23: 0.7818
REMARK 3 S TENSOR
REMARK 3 S11: 0.0547 S12: -0.1874 S13: 0.1113
REMARK 3 S21: 0.0949 S22: 0.2333 S23: -0.2883
REMARK 3 S31: 0.0193 S32: 0.2969 S33: -0.2902
REMARK 3 TLS GROUP : 9
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 330 THROUGH 349 )
REMARK 3 ORIGIN FOR THE GROUP (A): 37.7068 -49.2989 -5.3306
REMARK 3 T TENSOR
REMARK 3 T11: 0.4816 T22: 0.5205
REMARK 3 T33: 0.4115 T12: 0.0185
REMARK 3 T13: 0.0356 T23: -0.0825
REMARK 3 L TENSOR
REMARK 3 L11: 2.6106 L22: 3.1180
REMARK 3 L33: 4.9536 L12: -1.3364
REMARK 3 L13: 1.1645 L23: -3.8767
REMARK 3 S TENSOR
REMARK 3 S11: 0.0274 S12: 0.2923 S13: -0.0903
REMARK 3 S21: -0.2906 S22: 0.0912 S23: 0.1637
REMARK 3 S31: -0.0381 S32: -0.1575 S33: -0.1066
REMARK 3 TLS GROUP : 10
REMARK 3 SELECTION: CHAIN 'B' AND (RESID 3 THROUGH 9 )
REMARK 3 ORIGIN FOR THE GROUP (A): 47.5625 -35.6531 6.8693
REMARK 3 T TENSOR
REMARK 3 T11: 0.5727 T22: 0.5330
REMARK 3 T33: 0.7136 T12: -0.0167
REMARK 3 T13: -0.0134 T23: -0.1218
REMARK 3 L TENSOR
REMARK 3 L11: 2.0848 L22: 9.7424
REMARK 3 L33: 6.8255 L12: 1.8787
REMARK 3 L13: -0.0192 L23: -4.5041
REMARK 3 S TENSOR
REMARK 3 S11: 0.4796 S12: 0.2159 S13: 0.5512
REMARK 3 S21: 0.6082 S22: -0.0138 S23: -0.9983
REMARK 3 S31: -0.1430 S32: 0.7029 S33: -0.4833
REMARK 3 TLS GROUP : 11
REMARK 3 SELECTION: CHAIN 'B' AND (RESID 10 THROUGH 20 )
REMARK 3 ORIGIN FOR THE GROUP (A): 31.1939 -25.2919 1.6451
REMARK 3 T TENSOR
REMARK 3 T11: 0.5877 T22: 0.3923
REMARK 3 T33: 0.5351 T12: -0.0461
REMARK 3 T13: 0.1062 T23: 0.0753
REMARK 3 L TENSOR
REMARK 3 L11: 7.5664 L22: 8.1777
REMARK 3 L33: 6.5860 L12: -5.3473
REMARK 3 L13: 3.8629 L23: -1.4519
REMARK 3 S TENSOR
REMARK 3 S11: -0.4411 S12: 0.9272 S13: 1.0374
REMARK 3 S21: -0.6334 S22: -0.0149 S23: -0.6191
REMARK 3 S31: -0.6755 S32: 0.2680 S33: 0.4973
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 7A1Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-AUG-20.
REMARK 100 THE DEPOSITION ID IS D_1292110543.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 30-NOV-19
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 7.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : DIAMOND
REMARK 200 BEAMLINE : I04
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.97950
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : AUTOPROC
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56748
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750
REMARK 200 RESOLUTION RANGE LOW (A) : 56.122
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0
REMARK 200 DATA REDUNDANCY : 26.80
REMARK 200 R MERGE (I) : 0.05900
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 26.6000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78
REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0
REMARK 200 DATA REDUNDANCY IN SHELL : 28.10
REMARK 200 R MERGE FOR SHELL (I) : 8.13800
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.400
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 1H2K
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 61.82
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.22
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6M AMMONIUM SULPHATE, 6% PEG 400,
REMARK 280 0.1M HEPES PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE
REMARK 280 277K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z+1/2
REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4
REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4
REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4
REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4
REMARK 290 7555 Y,X,-Z
REMARK 290 8555 -Y,-X,-Z+1/2
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.08850
REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 42.98400
REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 42.98400
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.04425
REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 42.98400
REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 42.98400
REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 111.13275
REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 42.98400
REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 42.98400
REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 37.04425
REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 42.98400
REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 42.98400
REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 111.13275
REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 74.08850
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 8750 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 30210 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -139.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 85.96800
REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 -85.96800
REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A 1
REMARK 465 ALA A 2
REMARK 465 ALA A 3
REMARK 465 THR A 4
REMARK 465 ALA A 5
REMARK 465 ALA A 6
REMARK 465 GLU A 7
REMARK 465 ALA A 8
REMARK 465 VAL A 9
REMARK 465 ALA A 10
REMARK 465 SER A 11
REMARK 465 HIS B 1
REMARK 465 LEU B 2
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 GLU A 15 CG CD OE1 OE2
REMARK 470 GLU A 19 OE1 OE2
REMARK 470 LYS A 115 CG CD CE NZ
REMARK 470 GLN A 137 CD OE1 NE2
REMARK 470 ARG A 156 CG CD NE CZ NH1 NH2
REMARK 470 LYS A 304 CG CD CE NZ
REMARK 470 ARG A 305 CG CD NE CZ NH1 NH2
REMARK 470 GLU A 307 CG CD OE1 OE2
REMARK 470 GLU B 3 CG CD OE1 OE2
REMARK 470 LYS B 20 CG CD CE NZ
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O HOH A 707 O HOH A 747 1.89
REMARK 500 O HOH A 748 O HOH A 750 2.02
REMARK 500 O HOH A 664 O HOH A 760 2.04
REMARK 500 O HOH A 670 O HOH A 751 2.04
REMARK 500 O HOH A 739 O HOH A 741 2.05
REMARK 500 O HOH A 714 O HOH A 738 2.06
REMARK 500 O HOH A 695 O HOH A 755 2.07
REMARK 500 O HOH A 726 O HOH B 104 2.08
REMARK 500 O HOH A 758 O HOH A 773 2.17
REMARK 500 O HOH A 705 O HOH A 772 2.18
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375
REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.
REMARK 500
REMARK 500 DISTANCE CUTOFF:
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE
REMARK 500 OE2 GLU A 323 HH22 ARG A 347 7645 1.36
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ASP A 66 37.76 -143.31
REMARK 500 PHE A 100 72.90 -102.11
REMARK 500 GLU A 202 33.67 -94.43
REMARK 500 ASP A 237 134.12 -39.00
REMARK 500 ARG A 238 -7.06 77.58
REMARK 500 ASN A 246 75.80 -155.24
REMARK 500 TYR A 276 -8.96 78.16
REMARK 500 ASN A 332 118.69 -163.65
REMARK 500 ALA B 13 24.67 -141.51
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN A 501 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HIS A 199 NE2
REMARK 620 2 ASP A 201 OD2 114.8
REMARK 620 3 HIS A 279 NE2 96.4 91.1
REMARK 620 4 QVQ A 505 O05 84.9 133.8 129.7
REMARK 620 5 QVQ A 505 O03 163.4 79.6 91.3 78.8
REMARK 620 N 1 2 3 4
DBREF 7A1Q A 1 349 UNP Q9NWT6 HIF1N_HUMAN 1 349
DBREF 7A1Q B 1 20 PDB 7A1Q 7A1Q 1 20
SEQRES 1 A 349 MET ALA ALA THR ALA ALA GLU ALA VAL ALA SER GLY SER
SEQRES 2 A 349 GLY GLU PRO ARG GLU GLU ALA GLY ALA LEU GLY PRO ALA
SEQRES 3 A 349 TRP ASP GLU SER GLN LEU ARG SER TYR SER PHE PRO THR
SEQRES 4 A 349 ARG PRO ILE PRO ARG LEU SER GLN SER ASP PRO ARG ALA
SEQRES 5 A 349 GLU GLU LEU ILE GLU ASN GLU GLU PRO VAL VAL LEU THR
SEQRES 6 A 349 ASP THR ASN LEU VAL TYR PRO ALA LEU LYS TRP ASP LEU
SEQRES 7 A 349 GLU TYR LEU GLN GLU ASN ILE GLY ASN GLY ASP PHE SER
SEQRES 8 A 349 VAL TYR SER ALA SER THR HIS LYS PHE LEU TYR TYR ASP
SEQRES 9 A 349 GLU LYS LYS MET ALA ASN PHE GLN ASN PHE LYS PRO ARG
SEQRES 10 A 349 SER ASN ARG GLU GLU MET LYS PHE HIS GLU PHE VAL GLU
SEQRES 11 A 349 LYS LEU GLN ASP ILE GLN GLN ARG GLY GLY GLU GLU ARG
SEQRES 12 A 349 LEU TYR LEU GLN GLN THR LEU ASN ASP THR VAL GLY ARG
SEQRES 13 A 349 LYS ILE VAL MET ASP PHE LEU GLY PHE ASN TRP ASN TRP
SEQRES 14 A 349 ILE ASN LYS GLN GLN GLY LYS ARG GLY TRP GLY GLN LEU
SEQRES 15 A 349 THR SER ASN LEU LEU LEU ILE GLY MET GLU GLY ASN VAL
SEQRES 16 A 349 THR PRO ALA HIS TYR ASP GLU GLN GLN ASN PHE PHE ALA
SEQRES 17 A 349 GLN ILE LYS GLY TYR LYS ARG CYS ILE LEU PHE PRO PRO
SEQRES 18 A 349 ASP GLN PHE GLU CYS LEU TYR PRO TYR PRO VAL HIS HIS
SEQRES 19 A 349 PRO CYS ASP ARG GLN SER GLN VAL ASP PHE ASP ASN PRO
SEQRES 20 A 349 ASP TYR GLU ARG PHE PRO ASN PHE GLN ASN VAL VAL GLY
SEQRES 21 A 349 TYR GLU THR VAL VAL GLY PRO GLY ASP VAL LEU TYR ILE
SEQRES 22 A 349 PRO MET TYR TRP TRP HIS HIS ILE GLU SER LEU LEU ASN
SEQRES 23 A 349 GLY GLY ILE THR ILE THR VAL ASN PHE TRP TYR LYS GLY
SEQRES 24 A 349 ALA PRO THR PRO LYS ARG ILE GLU TYR PRO LEU LYS ALA
SEQRES 25 A 349 HIS GLN LYS VAL ALA ILE MET ARG ASN ILE GLU LYS MET
SEQRES 26 A 349 LEU GLY GLU ALA LEU GLY ASN PRO GLN GLU VAL GLY PRO
SEQRES 27 A 349 LEU LEU ASN THR MET ILE LYS GLY ARG TYR ASN
SEQRES 1 B 20 HIS LEU GLU VAL VAL LYS LEU LEU LEU GLU ALA GLY ALA
SEQRES 2 B 20 ASP VAL ASN ALA GLN ASP LYS
HET ZN A 501 1
HET SO4 A 502 5
HET SO4 A 503 5
HET SO4 A 504 5
HET QVQ A 505 21
HETNAM ZN ZINC ION
HETNAM SO4 SULFATE ION
HETNAM QVQ 3-(CARBOXYCARBONYL)CYCLOPENTANE-1-CARBOXYLIC ACID
HETSYN QVQ (1~{R},3~{S})-3-(CARBOXYCARBONYL)CYCLOPENTANE-1-
HETSYN 2 QVQ CARBOXYLIC ACID
FORMUL 3 ZN ZN 2+
FORMUL 4 SO4 3(O4 S 2-)
FORMUL 7 QVQ C8 H10 O5
FORMUL 8 HOH *185(H2 O)
HELIX 1 AA1 GLU A 19 LEU A 23 5 5
HELIX 2 AA2 ASP A 28 LEU A 32 5 5
HELIX 3 AA3 ASP A 49 ASN A 58 1 10
HELIX 4 AA4 VAL A 70 TRP A 76 5 7
HELIX 5 AA5 ASP A 77 ILE A 85 1 9
HELIX 6 AA6 ASP A 104 PHE A 111 5 8
HELIX 7 AA7 LYS A 124 GLY A 139 1 16
HELIX 8 AA8 GLY A 155 GLY A 164 1 10
HELIX 9 AA9 ASN A 166 GLY A 178 1 13
HELIX 10 AB1 PRO A 220 ASP A 222 5 3
HELIX 11 AB2 GLN A 223 TYR A 228 1 6
HELIX 12 AB3 PHE A 252 VAL A 258 5 7
HELIX 13 AB4 LYS A 311 GLY A 331 1 21
HELIX 14 AB5 ASN A 332 GLN A 334 5 3
HELIX 15 AB6 GLU A 335 LYS A 345 1 11
HELIX 16 AB7 VAL B 4 GLU B 10 1 7
SHEET 1 AA1 5 THR A 39 PRO A 41 0
SHEET 2 AA1 5 GLY A 260 VAL A 265 1 O GLU A 262 N ARG A 40
SHEET 3 AA1 5 LYS A 214 PHE A 219 -1 N LEU A 218 O TYR A 261
SHEET 4 AA1 5 TRP A 278 SER A 283 -1 O HIS A 280 N ILE A 217
SHEET 5 AA1 5 VAL A 195 HIS A 199 -1 N THR A 196 O ILE A 281
SHEET 1 AA2 9 ARG A 44 LEU A 45 0
SHEET 2 AA2 9 VAL A 62 LEU A 64 1 O VAL A 63 N LEU A 45
SHEET 3 AA2 9 VAL A 270 ILE A 273 -1 O VAL A 270 N LEU A 64
SHEET 4 AA2 9 GLN A 204 LYS A 211 -1 N PHE A 207 O LEU A 271
SHEET 5 AA2 9 THR A 290 TYR A 297 -1 O TYR A 297 N GLN A 204
SHEET 6 AA2 9 LEU A 186 GLY A 190 -1 N LEU A 188 O THR A 292
SHEET 7 AA2 9 ARG A 143 THR A 149 -1 N GLN A 148 O LEU A 187
SHEET 8 AA2 9 PHE A 90 ALA A 95 -1 N TYR A 93 O TYR A 145
SHEET 9 AA2 9 SER A 118 MET A 123 -1 O MET A 123 N PHE A 90
SHEET 1 AA3 6 ARG A 44 LEU A 45 0
SHEET 2 AA3 6 VAL A 62 LEU A 64 1 O VAL A 63 N LEU A 45
SHEET 3 AA3 6 VAL A 270 ILE A 273 -1 O VAL A 270 N LEU A 64
SHEET 4 AA3 6 GLN A 204 LYS A 211 -1 N PHE A 207 O LEU A 271
SHEET 5 AA3 6 THR A 290 TYR A 297 -1 O TYR A 297 N GLN A 204
SHEET 6 AA3 6 LEU A 182 SER A 184 -1 N THR A 183 O TRP A 296
LINK NE2 HIS A 199 ZN ZN A 501 1555 1555 2.07
LINK OD2 ASP A 201 ZN ZN A 501 1555 1555 1.96
LINK NE2 HIS A 279 ZN ZN A 501 1555 1555 2.10
LINK ZN ZN A 501 O05 QVQ A 505 1555 1555 1.95
LINK ZN ZN A 501 O03 QVQ A 505 1555 1555 2.08
CISPEP 1 TYR A 308 PRO A 309 0 -1.73
CRYST1 85.968 85.968 148.177 90.00 90.00 90.00 P 41 21 2 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.011632 0.000000 0.000000 0.00000
SCALE2 0.000000 0.011632 0.000000 0.00000
SCALE3 0.000000 0.000000 0.006749 0.00000