HEADER OXIDOREDUCTASE 13-AUG-20 7A1S TITLE FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH ZN(II), 3-METHYL-2- TITLE 2 OXOGLUTARATE, AND TANKYRASE-2 (TNKS2) FRAGMENT PEPTIDE (21-MER) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOXIA-INDUCIBLE FACTOR 1-ALPHA INHIBITOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FACTOR INHIBITING HIF-1,FIH-1,HYPOXIA-INDUCIBLE FACTOR COMPND 5 ASPARAGINE HYDROXYLASE; COMPND 6 EC: 1.14.11.30,1.14.11.-; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: TANKYRASE-2; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HIF1AN, FIH1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS HYPOXIA-INDUCIBLE FACTOR ASPARAGINE HYDROXYLASE, DIOXYGENASE, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.NAKASHIMA,L.BREWITZ,C.J.SCHOFIELD REVDAT 3 31-JAN-24 7A1S 1 REMARK REVDAT 2 22-DEC-21 7A1S 1 JRNL REVDAT 1 25-AUG-21 7A1S 0 JRNL AUTH Y.NAKASHIMA,L.BREWITZ,A.TUMBER,E.SALAH,C.J.SCHOFIELD JRNL TITL 2-OXOGLUTARATE DERIVATIVES CAN SELECTIVELY ENHANCE OR JRNL TITL 2 INHIBIT THE ACTIVITY OF HUMAN OXYGENASES. JRNL REF NAT COMMUN V. 12 6478 2021 JRNL REFN ESSN 2041-1723 JRNL PMID 34759269 JRNL DOI 10.1038/S41467-021-26673-2 REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 74.47 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 37966 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1901 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 74.4700 - 4.8300 1.00 2807 153 0.1835 0.2067 REMARK 3 2 4.8300 - 3.8400 1.00 2672 132 0.1251 0.1672 REMARK 3 3 3.8400 - 3.3500 1.00 2626 129 0.1536 0.1798 REMARK 3 4 3.3500 - 3.0500 1.00 2586 144 0.1822 0.2055 REMARK 3 5 3.0500 - 2.8300 1.00 2605 117 0.1952 0.2168 REMARK 3 6 2.8300 - 2.6600 1.00 2582 140 0.2054 0.2462 REMARK 3 7 2.6600 - 2.5300 1.00 2543 127 0.2043 0.2324 REMARK 3 8 2.5300 - 2.4200 1.00 2569 152 0.2050 0.2277 REMARK 3 9 2.4200 - 2.3200 1.00 2540 134 0.2216 0.2221 REMARK 3 10 2.3200 - 2.2400 1.00 2564 137 0.2337 0.2279 REMARK 3 11 2.2400 - 2.1700 1.00 2516 145 0.2473 0.2855 REMARK 3 12 2.1700 - 2.1100 1.00 2557 118 0.2790 0.2793 REMARK 3 13 2.1100 - 2.0600 1.00 2517 141 0.2963 0.3451 REMARK 3 14 2.0600 - 2.0100 0.95 2381 132 0.3326 0.3345 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.572 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 45.92 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3012 REMARK 3 ANGLE : 0.513 4104 REMARK 3 CHIRALITY : 0.042 412 REMARK 3 PLANARITY : 0.003 544 REMARK 3 DIHEDRAL : 16.783 1101 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 15 THROUGH 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.5091 10.4284 -22.7499 REMARK 3 T TENSOR REMARK 3 T11: 0.5461 T22: 0.7443 REMARK 3 T33: 0.6952 T12: 0.0265 REMARK 3 T13: 0.0398 T23: -0.2101 REMARK 3 L TENSOR REMARK 3 L11: 0.0790 L22: 0.9455 REMARK 3 L33: 0.2772 L12: -0.2360 REMARK 3 L13: 0.1240 L23: -0.2233 REMARK 3 S TENSOR REMARK 3 S11: -0.1063 S12: 0.4879 S13: -0.6493 REMARK 3 S21: -0.2654 S22: -0.2036 S23: -0.1564 REMARK 3 S31: 0.4447 S32: 0.0705 S33: 0.2860 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 50 THROUGH 95 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.4018 19.0293 -14.7340 REMARK 3 T TENSOR REMARK 3 T11: 0.3542 T22: 0.5312 REMARK 3 T33: 0.4680 T12: 0.0755 REMARK 3 T13: -0.0304 T23: -0.0988 REMARK 3 L TENSOR REMARK 3 L11: 2.1113 L22: 1.6402 REMARK 3 L33: 1.9956 L12: 0.2119 REMARK 3 L13: -1.3608 L23: 0.1349 REMARK 3 S TENSOR REMARK 3 S11: -0.0952 S12: -0.1207 S13: -0.1422 REMARK 3 S21: 0.1884 S22: 0.0732 S23: -0.2414 REMARK 3 S31: 0.0068 S32: 0.3054 S33: 0.0287 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 96 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.5603 20.4923 6.4778 REMARK 3 T TENSOR REMARK 3 T11: 0.7023 T22: 0.7281 REMARK 3 T33: 0.5644 T12: 0.0399 REMARK 3 T13: 0.0090 T23: -0.0223 REMARK 3 L TENSOR REMARK 3 L11: 2.2651 L22: 5.7010 REMARK 3 L33: 2.5633 L12: -0.7412 REMARK 3 L13: -0.4809 L23: 1.5470 REMARK 3 S TENSOR REMARK 3 S11: -0.3243 S12: -0.4134 S13: 0.0725 REMARK 3 S21: 1.2936 S22: 0.1010 S23: 0.2232 REMARK 3 S31: 0.3381 S32: 0.0018 S33: 0.1707 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 118 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.3374 8.4143 3.7589 REMARK 3 T TENSOR REMARK 3 T11: 0.8173 T22: 0.9235 REMARK 3 T33: 0.6083 T12: 0.2571 REMARK 3 T13: -0.0642 T23: 0.0799 REMARK 3 L TENSOR REMARK 3 L11: 4.1825 L22: 0.5293 REMARK 3 L33: 1.5676 L12: -0.4574 REMARK 3 L13: -0.8143 L23: -0.4322 REMARK 3 S TENSOR REMARK 3 S11: -0.3130 S12: -1.0619 S13: -0.6568 REMARK 3 S21: 0.6424 S22: 0.2785 S23: -0.0271 REMARK 3 S31: 0.7042 S32: 0.7510 S33: -0.0254 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 138 THROUGH 166 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.7906 16.4536 -5.5266 REMARK 3 T TENSOR REMARK 3 T11: 0.3822 T22: 0.6747 REMARK 3 T33: 0.4718 T12: 0.1229 REMARK 3 T13: -0.0722 T23: -0.0349 REMARK 3 L TENSOR REMARK 3 L11: 2.1423 L22: 0.5959 REMARK 3 L33: 2.5651 L12: -0.5680 REMARK 3 L13: -0.3917 L23: 0.3432 REMARK 3 S TENSOR REMARK 3 S11: -0.0848 S12: -0.5300 S13: -0.2104 REMARK 3 S21: 0.2738 S22: 0.0359 S23: -0.2294 REMARK 3 S31: 0.1634 S32: 0.6518 S33: 0.0709 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 167 THROUGH 190 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.8105 29.5539 -15.9119 REMARK 3 T TENSOR REMARK 3 T11: 0.3529 T22: 0.5390 REMARK 3 T33: 0.4704 T12: -0.0078 REMARK 3 T13: 0.0206 T23: -0.0617 REMARK 3 L TENSOR REMARK 3 L11: 2.4585 L22: 2.2313 REMARK 3 L33: 1.6516 L12: -0.7884 REMARK 3 L13: -0.8281 L23: -0.0092 REMARK 3 S TENSOR REMARK 3 S11: 0.2767 S12: -0.1608 S13: 0.4513 REMARK 3 S21: 0.0711 S22: -0.0386 S23: -0.2146 REMARK 3 S31: -0.2670 S32: 0.4632 S33: -0.2749 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 191 THROUGH 297 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.5928 19.9969 -10.1144 REMARK 3 T TENSOR REMARK 3 T11: 0.3388 T22: 0.4808 REMARK 3 T33: 0.4269 T12: 0.0133 REMARK 3 T13: -0.0094 T23: -0.0667 REMARK 3 L TENSOR REMARK 3 L11: 2.4140 L22: 0.9355 REMARK 3 L33: 1.8103 L12: -0.6448 REMARK 3 L13: -1.0040 L23: 0.3412 REMARK 3 S TENSOR REMARK 3 S11: -0.0090 S12: 0.0409 S13: -0.2215 REMARK 3 S21: 0.1141 S22: -0.0213 S23: 0.0305 REMARK 3 S31: 0.1072 S32: -0.0006 S33: 0.0205 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 298 THROUGH 329 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.2105 40.8320 -8.4365 REMARK 3 T TENSOR REMARK 3 T11: 0.4813 T22: 0.4695 REMARK 3 T33: 0.5224 T12: -0.0044 REMARK 3 T13: 0.0871 T23: -0.0429 REMARK 3 L TENSOR REMARK 3 L11: 2.8499 L22: 1.9759 REMARK 3 L33: 0.9293 L12: -0.4905 REMARK 3 L13: -0.2096 L23: 0.1756 REMARK 3 S TENSOR REMARK 3 S11: 0.1300 S12: 0.0989 S13: 0.5436 REMARK 3 S21: -0.2224 S22: -0.0071 S23: -0.2661 REMARK 3 S31: -0.5494 S32: 0.3003 S33: -0.1015 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 330 THROUGH 349 ) REMARK 3 ORIGIN FOR THE GROUP (A): -49.1707 37.5672 5.5049 REMARK 3 T TENSOR REMARK 3 T11: 0.5016 T22: 0.4637 REMARK 3 T33: 0.3913 T12: -0.0098 REMARK 3 T13: 0.0771 T23: -0.0277 REMARK 3 L TENSOR REMARK 3 L11: 7.0716 L22: 3.0991 REMARK 3 L33: 3.1967 L12: -1.5301 REMARK 3 L13: 1.8151 L23: -1.0818 REMARK 3 S TENSOR REMARK 3 S11: 0.0957 S12: -0.5368 S13: -0.3313 REMARK 3 S21: 0.1617 S22: 0.0870 S23: 0.0324 REMARK 3 S31: -0.0108 S32: 0.2356 S33: -0.1810 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 692 THROUGH 698 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.6095 49.3038 -6.7190 REMARK 3 T TENSOR REMARK 3 T11: 0.8337 T22: 0.7386 REMARK 3 T33: 0.9395 T12: -0.1245 REMARK 3 T13: 0.2669 T23: -0.0521 REMARK 3 L TENSOR REMARK 3 L11: 8.0678 L22: 8.9114 REMARK 3 L33: 7.7524 L12: -0.8174 REMARK 3 L13: 1.6048 L23: 0.7176 REMARK 3 S TENSOR REMARK 3 S11: 0.3251 S12: 0.5071 S13: 1.5492 REMARK 3 S21: -0.4606 S22: 0.1598 S23: -1.1113 REMARK 3 S31: -1.5265 S32: 0.8383 S33: -0.2637 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 699 THROUGH 708 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.3795 33.5816 -4.2943 REMARK 3 T TENSOR REMARK 3 T11: 0.4578 T22: 0.6356 REMARK 3 T33: 0.4626 T12: 0.0155 REMARK 3 T13: -0.0079 T23: -0.0967 REMARK 3 L TENSOR REMARK 3 L11: 5.3481 L22: 4.3763 REMARK 3 L33: 1.4314 L12: -1.7113 REMARK 3 L13: -0.2595 L23: 0.9133 REMARK 3 S TENSOR REMARK 3 S11: -0.0006 S12: -0.6806 S13: 0.4845 REMARK 3 S21: 0.0522 S22: 0.1919 S23: -0.6999 REMARK 3 S31: -0.3493 S32: 0.2699 S33: -0.1386 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7A1S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1292110540. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUL-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38135 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.006 REMARK 200 RESOLUTION RANGE LOW (A) : 74.470 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 25.80 REMARK 200 R MERGE (I) : 0.21900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.01 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 27.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1H2K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6M AMMONIUM SULPHATE, 6% PEG 400, REMARK 280 0.1M HEPES PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.20850 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 43.04450 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 43.04450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.10425 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 43.04450 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 43.04450 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 111.31275 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 43.04450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.04450 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 37.10425 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 43.04450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.04450 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 111.31275 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 74.20850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -150.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 824 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 THR A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 6 REMARK 465 GLU A 7 REMARK 465 ALA A 8 REMARK 465 VAL A 9 REMARK 465 ALA A 10 REMARK 465 SER A 11 REMARK 465 GLY A 12 REMARK 465 SER A 13 REMARK 465 GLY A 14 REMARK 465 ASN B 691 REMARK 465 ASP B 709 REMARK 465 LYS B 710 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 17 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 29 CD OE1 OE2 REMARK 470 LYS A 115 CG CD CE NZ REMARK 470 ARG A 117 NE CZ NH1 NH2 REMARK 470 ARG A 156 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 157 CD CE NZ REMARK 470 LYS A 304 CG CD CE NZ REMARK 470 ARG A 305 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 692 CG CD1 CD2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN A 136 OE1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD21 ASN A 110 O HOH A 707 1.58 REMARK 500 O HOH A 784 O HOH A 888 1.92 REMARK 500 O HOH A 797 O HOH B 821 1.94 REMARK 500 O HOH A 751 O HOH A 881 1.95 REMARK 500 O HOH A 826 O HOH A 926 1.95 REMARK 500 O HOH A 892 O HOH A 951 1.95 REMARK 500 O HOH A 958 O HOH A 973 1.96 REMARK 500 O HOH A 896 O HOH A 942 1.98 REMARK 500 O HOH A 716 O HOH A 926 1.98 REMARK 500 O HOH B 819 O HOH B 825 1.99 REMARK 500 O HOH A 897 O HOH A 958 2.01 REMARK 500 O HOH A 841 O HOH A 912 2.02 REMARK 500 O HOH A 927 O HOH B 818 2.02 REMARK 500 O HOH A 890 O HOH A 897 2.02 REMARK 500 O HOH A 909 O HOH A 965 2.02 REMARK 500 O HOH A 900 O HOH A 945 2.02 REMARK 500 O HOH A 722 O HOH A 892 2.03 REMARK 500 O HOH A 928 O HOH A 950 2.03 REMARK 500 O HOH A 743 O HOH A 852 2.03 REMARK 500 O HOH A 776 O HOH B 809 2.03 REMARK 500 O HOH A 855 O HOH A 884 2.05 REMARK 500 O HOH A 908 O HOH B 805 2.05 REMARK 500 O HOH A 922 O HOH B 821 2.06 REMARK 500 O HOH A 946 O HOH A 966 2.07 REMARK 500 O HOH A 851 O HOH A 865 2.07 REMARK 500 O HOH A 810 O HOH A 867 2.08 REMARK 500 O HOH B 815 O HOH B 818 2.08 REMARK 500 O HOH A 793 O HOH A 901 2.08 REMARK 500 O HOH A 774 O HOH A 871 2.08 REMARK 500 O HOH A 974 O HOH A 982 2.08 REMARK 500 O HOH A 837 O HOH A 935 2.09 REMARK 500 O HOH B 815 O HOH B 819 2.09 REMARK 500 O HOH A 952 O HOH A 957 2.10 REMARK 500 O HOH A 868 O HOH A 878 2.10 REMARK 500 O HOH A 767 O HOH A 856 2.10 REMARK 500 O HOH A 843 O HOH A 979 2.10 REMARK 500 O HOH A 892 O HOH A 911 2.11 REMARK 500 O HOH A 731 O HOH A 765 2.11 REMARK 500 O HOH A 816 O HOH B 806 2.12 REMARK 500 O HOH A 941 O HOH A 975 2.13 REMARK 500 O HOH A 927 O HOH A 939 2.13 REMARK 500 O HOH A 924 O HOH A 977 2.14 REMARK 500 O HOH A 858 O HOH A 871 2.15 REMARK 500 O HOH A 916 O HOH A 925 2.15 REMARK 500 O HOH A 913 O HOH A 945 2.15 REMARK 500 O HOH A 974 O HOH A 975 2.16 REMARK 500 O HOH A 965 O HOH A 970 2.17 REMARK 500 O HOH A 888 O HOH A 951 2.18 REMARK 500 O3 SO4 A 603 O HOH A 701 2.19 REMARK 500 O HOH A 849 O HOH A 932 2.19 REMARK 500 REMARK 500 THIS ENTRY HAS 52 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 800 O HOH A 835 7465 1.92 REMARK 500 O HOH A 747 O HOH A 833 6554 1.97 REMARK 500 O HOH A 730 O HOH A 910 7465 1.99 REMARK 500 O HOH A 706 O HOH A 907 7465 2.02 REMARK 500 O HOH B 820 O HOH B 823 7465 2.04 REMARK 500 O HOH A 946 O HOH A 973 6454 2.05 REMARK 500 O HOH A 907 O HOH A 910 7465 2.07 REMARK 500 O HOH A 803 O HOH A 817 6554 2.08 REMARK 500 O HOH A 899 O HOH A 957 6554 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 66 42.17 -141.16 REMARK 500 PHE A 100 71.21 -109.86 REMARK 500 ILE A 210 -53.18 -121.78 REMARK 500 ILE A 210 -53.40 -121.78 REMARK 500 ARG A 238 -7.56 78.08 REMARK 500 TYR A 276 -11.79 80.19 REMARK 500 ASN A 332 117.76 -163.67 REMARK 500 ALA B 703 34.47 -140.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 610 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 199 NE2 REMARK 620 2 ASP A 201 OD2 106.4 REMARK 620 3 HIS A 279 NE2 94.2 90.3 REMARK 620 4 ROQ A 609 O01 88.5 160.7 100.9 REMARK 620 5 ROQ A 609 O02 152.8 90.1 107.4 71.6 REMARK 620 6 HOH A 702 O 67.2 102.5 159.7 71.7 88.5 REMARK 620 N 1 2 3 4 5 DBREF 7A1S A 1 349 UNP Q9NWT6 HIF1N_HUMAN 1 349 DBREF 7A1S B 691 710 PDB 7A1S 7A1S 691 710 SEQRES 1 A 349 MET ALA ALA THR ALA ALA GLU ALA VAL ALA SER GLY SER SEQRES 2 A 349 GLY GLU PRO ARG GLU GLU ALA GLY ALA LEU GLY PRO ALA SEQRES 3 A 349 TRP ASP GLU SER GLN LEU ARG SER TYR SER PHE PRO THR SEQRES 4 A 349 ARG PRO ILE PRO ARG LEU SER GLN SER ASP PRO ARG ALA SEQRES 5 A 349 GLU GLU LEU ILE GLU ASN GLU GLU PRO VAL VAL LEU THR SEQRES 6 A 349 ASP THR ASN LEU VAL TYR PRO ALA LEU LYS TRP ASP LEU SEQRES 7 A 349 GLU TYR LEU GLN GLU ASN ILE GLY ASN GLY ASP PHE SER SEQRES 8 A 349 VAL TYR SER ALA SER THR HIS LYS PHE LEU TYR TYR ASP SEQRES 9 A 349 GLU LYS LYS MET ALA ASN PHE GLN ASN PHE LYS PRO ARG SEQRES 10 A 349 SER ASN ARG GLU GLU MET LYS PHE HIS GLU PHE VAL GLU SEQRES 11 A 349 LYS LEU GLN ASP ILE GLN GLN ARG GLY GLY GLU GLU ARG SEQRES 12 A 349 LEU TYR LEU GLN GLN THR LEU ASN ASP THR VAL GLY ARG SEQRES 13 A 349 LYS ILE VAL MET ASP PHE LEU GLY PHE ASN TRP ASN TRP SEQRES 14 A 349 ILE ASN LYS GLN GLN GLY LYS ARG GLY TRP GLY GLN LEU SEQRES 15 A 349 THR SER ASN LEU LEU LEU ILE GLY MET GLU GLY ASN VAL SEQRES 16 A 349 THR PRO ALA HIS TYR ASP GLU GLN GLN ASN PHE PHE ALA SEQRES 17 A 349 GLN ILE LYS GLY TYR LYS ARG CYS ILE LEU PHE PRO PRO SEQRES 18 A 349 ASP GLN PHE GLU CYS LEU TYR PRO TYR PRO VAL HIS HIS SEQRES 19 A 349 PRO CYS ASP ARG GLN SER GLN VAL ASP PHE ASP ASN PRO SEQRES 20 A 349 ASP TYR GLU ARG PHE PRO ASN PHE GLN ASN VAL VAL GLY SEQRES 21 A 349 TYR GLU THR VAL VAL GLY PRO GLY ASP VAL LEU TYR ILE SEQRES 22 A 349 PRO MET TYR TRP TRP HIS HIS ILE GLU SER LEU LEU ASN SEQRES 23 A 349 GLY GLY ILE THR ILE THR VAL ASN PHE TRP TYR LYS GLY SEQRES 24 A 349 ALA PRO THR PRO LYS ARG ILE GLU TYR PRO LEU LYS ALA SEQRES 25 A 349 HIS GLN LYS VAL ALA ILE MET ARG ASN ILE GLU LYS MET SEQRES 26 A 349 LEU GLY GLU ALA LEU GLY ASN PRO GLN GLU VAL GLY PRO SEQRES 27 A 349 LEU LEU ASN THR MET ILE LYS GLY ARG TYR ASN SEQRES 1 B 20 ASN LEU GLU VAL ALA GLU TYR LEU LEU GLN HIS GLY ALA SEQRES 2 B 20 ASP VAL ASN ALA GLN ASP LYS HET SO4 A 601 5 HET SO4 A 602 5 HET SO4 A 603 5 HET SO4 A 604 5 HET SO4 A 605 5 HET SO4 A 606 5 HET SO4 A 607 5 HET SO4 A 608 5 HET ROQ A 609 17 HET ZN A 610 1 HETNAM SO4 SULFATE ION HETNAM ROQ (3~{S})-3-METHYL-2-OXIDANYLIDENE-PENTANEDIOIC ACID HETNAM ZN ZINC ION FORMUL 3 SO4 8(O4 S 2-) FORMUL 11 ROQ C6 H8 O5 FORMUL 12 ZN ZN 2+ FORMUL 13 HOH *307(H2 O) HELIX 1 AA1 GLU A 19 LEU A 23 5 5 HELIX 2 AA2 ASP A 28 LEU A 32 5 5 HELIX 3 AA3 ASP A 49 ASN A 58 1 10 HELIX 4 AA4 VAL A 70 TRP A 76 5 7 HELIX 5 AA5 ASP A 77 ILE A 85 1 9 HELIX 6 AA6 ASP A 104 GLN A 112 5 9 HELIX 7 AA7 LYS A 124 GLY A 139 1 16 HELIX 8 AA8 GLY A 155 GLY A 164 1 10 HELIX 9 AA9 ASN A 166 GLY A 178 1 13 HELIX 10 AB1 PRO A 220 ASP A 222 5 3 HELIX 11 AB2 GLN A 223 TYR A 228 1 6 HELIX 12 AB3 PHE A 252 VAL A 258 5 7 HELIX 13 AB4 LYS A 311 LEU A 330 1 20 HELIX 14 AB5 ASN A 332 GLN A 334 5 3 HELIX 15 AB6 GLU A 335 LYS A 345 1 11 HELIX 16 AB7 GLU B 693 GLN B 700 1 8 SHEET 1 AA1 5 THR A 39 PRO A 41 0 SHEET 2 AA1 5 GLY A 260 VAL A 265 1 O GLU A 262 N ARG A 40 SHEET 3 AA1 5 LYS A 214 PHE A 219 -1 N LEU A 218 O TYR A 261 SHEET 4 AA1 5 TRP A 278 SER A 283 -1 O HIS A 280 N ILE A 217 SHEET 5 AA1 5 VAL A 195 HIS A 199 -1 N THR A 196 O ILE A 281 SHEET 1 AA2 9 ARG A 44 LEU A 45 0 SHEET 2 AA2 9 VAL A 62 LEU A 64 1 O VAL A 63 N LEU A 45 SHEET 3 AA2 9 VAL A 270 ILE A 273 -1 O VAL A 270 N LEU A 64 SHEET 4 AA2 9 GLN A 204 LYS A 211 -1 N PHE A 207 O LEU A 271 SHEET 5 AA2 9 THR A 290 TYR A 297 -1 O TYR A 297 N GLN A 204 SHEET 6 AA2 9 LEU A 186 GLY A 190 -1 N LEU A 188 O THR A 292 SHEET 7 AA2 9 ARG A 143 THR A 149 -1 N GLN A 148 O LEU A 187 SHEET 8 AA2 9 PHE A 90 ALA A 95 -1 N ALA A 95 O ARG A 143 SHEET 9 AA2 9 SER A 118 MET A 123 -1 O MET A 123 N PHE A 90 SHEET 1 AA3 6 ARG A 44 LEU A 45 0 SHEET 2 AA3 6 VAL A 62 LEU A 64 1 O VAL A 63 N LEU A 45 SHEET 3 AA3 6 VAL A 270 ILE A 273 -1 O VAL A 270 N LEU A 64 SHEET 4 AA3 6 GLN A 204 LYS A 211 -1 N PHE A 207 O LEU A 271 SHEET 5 AA3 6 THR A 290 TYR A 297 -1 O TYR A 297 N GLN A 204 SHEET 6 AA3 6 LEU A 182 SER A 184 -1 N THR A 183 O TRP A 296 LINK NE2 HIS A 199 ZN ZN A 610 1555 1555 2.16 LINK OD2 ASP A 201 ZN ZN A 610 1555 1555 2.02 LINK NE2 HIS A 279 ZN ZN A 610 1555 1555 2.07 LINK O01 ROQ A 609 ZN ZN A 610 1555 1555 2.16 LINK O02 ROQ A 609 ZN ZN A 610 1555 1555 2.24 LINK ZN ZN A 610 O HOH A 702 1555 1555 1.82 CISPEP 1 TYR A 308 PRO A 309 0 0.61 CRYST1 86.089 86.089 148.417 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011616 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011616 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006738 0.00000