HEADER TRANSFERASE 18-AUG-20 7A3V TITLE TRNA-GUANINE TRANSGLYCOSYLASE C158S/C281S/Y330C/H333A MUTANT IN TITLE 2 COMPLEX WITH 3-HYDROXYSULFOLANE COMPND MOL_ID: 1; COMPND 2 MOLECULE: QUEUINE TRNA-RIBOSYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GUANINE INSERTION ENZYME,TRNA-GUANINE TRANSGLYCOSYLASE; COMPND 5 EC: 2.4.2.29; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZYMOMONAS MOBILIS SUBSP. MOBILIS ZM4 = ATCC SOURCE 3 31821; SOURCE 4 ORGANISM_TAXID: 264203; SOURCE 5 GENE: TGT, ZMO0363; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PPR-IBA2 KEYWDS ENZYME, DISULFIDE, FRAGMENT, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.NGUYEN,A.HEINE,G.KLEBE REVDAT 4 31-JAN-24 7A3V 1 REMARK REVDAT 3 30-JUN-21 7A3V 1 JRNL REVDAT 2 23-JUN-21 7A3V 1 JRNL REMARK ATOM REVDAT 1 16-JUN-21 7A3V 0 JRNL AUTH D.NGUYEN,X.XIE,S.JAKOBI,F.TERWESTEN,A.METZ,T.X.P.NGUYEN, JRNL AUTH 2 V.A.PALCHYKOV,A.HEINE,K.REUTER,G.KLEBE JRNL TITL TARGETING A CRYPTIC POCKET IN A PROTEIN-PROTEIN CONTACT BY JRNL TITL 2 DISULFIDE-INDUCED RUPTURE OF A HOMODIMERIC INTERFACE. JRNL REF ACS CHEM.BIOL. V. 16 1090 2021 JRNL REFN ESSN 1554-8937 JRNL PMID 34081441 JRNL DOI 10.1021/ACSCHEMBIO.1C00296 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 61290 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3065 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 4.7600 - 3.7800 1.00 2749 145 0.1681 0.1548 REMARK 3 2 3.7800 - 3.3000 1.00 2704 142 0.1636 0.1882 REMARK 3 3 3.3000 - 3.0000 1.00 2692 142 0.1726 0.2040 REMARK 3 4 3.0000 - 2.7900 1.00 2668 141 0.1868 0.1749 REMARK 3 5 2.7900 - 2.6200 1.00 2664 140 0.1770 0.1825 REMARK 3 6 2.6200 - 2.4900 1.00 2655 139 0.1795 0.2094 REMARK 3 7 2.4900 - 2.3800 1.00 2633 139 0.1818 0.2062 REMARK 3 8 2.3800 - 2.2900 1.00 2653 140 0.1675 0.1972 REMARK 3 9 2.2900 - 2.2100 1.00 2621 138 0.1642 0.1711 REMARK 3 10 2.2100 - 2.1400 1.00 2646 139 0.1593 0.1803 REMARK 3 11 2.1400 - 2.0800 1.00 2634 138 0.1632 0.1910 REMARK 3 12 2.0800 - 2.0300 1.00 2619 138 0.1667 0.1821 REMARK 3 13 2.0300 - 1.9800 1.00 2621 138 0.1686 0.1994 REMARK 3 14 1.9800 - 1.9300 1.00 2632 139 0.1793 0.2116 REMARK 3 15 1.9300 - 1.8900 1.00 2615 137 0.1893 0.2192 REMARK 3 16 1.8900 - 1.8500 1.00 2612 138 0.1998 0.2125 REMARK 3 17 1.8500 - 1.8200 1.00 2632 138 0.2090 0.2515 REMARK 3 18 1.8200 - 1.7900 1.00 2607 138 0.2218 0.2417 REMARK 3 19 1.7900 - 1.7600 1.00 2595 136 0.2434 0.2853 REMARK 3 20 1.7600 - 1.7300 0.99 2567 135 0.2600 0.3089 REMARK 3 21 1.7300 - 1.7000 0.96 2501 132 0.2905 0.2946 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.169 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.922 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.03 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3018 REMARK 3 ANGLE : 0.793 4089 REMARK 3 CHIRALITY : 0.054 435 REMARK 3 PLANARITY : 0.006 547 REMARK 3 DIHEDRAL : 16.296 1817 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 10 THROUGH 39 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.6689 47.1042 -13.7377 REMARK 3 T TENSOR REMARK 3 T11: 0.3555 T22: 0.2743 REMARK 3 T33: 0.3109 T12: 0.0541 REMARK 3 T13: -0.0596 T23: -0.0275 REMARK 3 L TENSOR REMARK 3 L11: 0.2006 L22: 0.0304 REMARK 3 L33: 0.0764 L12: 0.0235 REMARK 3 L13: 0.0985 L23: -0.0229 REMARK 3 S TENSOR REMARK 3 S11: -0.0859 S12: 0.0794 S13: 0.2747 REMARK 3 S21: -0.1922 S22: -0.0888 S23: 0.1131 REMARK 3 S31: -0.2752 S32: -0.1031 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 40 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.6814 38.2825 -7.5386 REMARK 3 T TENSOR REMARK 3 T11: 0.2713 T22: 0.2302 REMARK 3 T33: 0.2672 T12: -0.0302 REMARK 3 T13: -0.0618 T23: -0.0228 REMARK 3 L TENSOR REMARK 3 L11: 0.1034 L22: 0.7928 REMARK 3 L33: 0.6013 L12: 0.1008 REMARK 3 L13: -0.2742 L23: -0.2223 REMARK 3 S TENSOR REMARK 3 S11: 0.0343 S12: 0.0694 S13: 0.0365 REMARK 3 S21: 0.0429 S22: -0.0509 S23: -0.1907 REMARK 3 S31: -0.1328 S32: 0.1020 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 105 THROUGH 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.0048 44.9773 11.7989 REMARK 3 T TENSOR REMARK 3 T11: 0.6556 T22: 0.3320 REMARK 3 T33: 0.3245 T12: -0.2056 REMARK 3 T13: -0.2383 T23: 0.0223 REMARK 3 L TENSOR REMARK 3 L11: 0.4977 L22: 0.3887 REMARK 3 L33: 0.1711 L12: 0.3692 REMARK 3 L13: -0.0952 L23: -0.1442 REMARK 3 S TENSOR REMARK 3 S11: 0.4935 S12: -0.7525 S13: -0.1797 REMARK 3 S21: 0.9369 S22: -0.4010 S23: -0.2401 REMARK 3 S31: 0.3438 S32: -0.0073 S33: 0.0703 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 132 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.6089 52.8125 5.4906 REMARK 3 T TENSOR REMARK 3 T11: 0.4261 T22: 0.2687 REMARK 3 T33: 0.2977 T12: -0.1084 REMARK 3 T13: -0.0480 T23: -0.0957 REMARK 3 L TENSOR REMARK 3 L11: 1.2197 L22: 0.9417 REMARK 3 L33: 0.6969 L12: 0.4110 REMARK 3 L13: 0.7953 L23: 0.2035 REMARK 3 S TENSOR REMARK 3 S11: 0.1989 S12: -0.3264 S13: 0.3068 REMARK 3 S21: 0.2533 S22: -0.2413 S23: -0.1518 REMARK 3 S31: -0.3330 S32: -0.1243 S33: -0.1411 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 189 THROUGH 274 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.9832 48.2927 2.5825 REMARK 3 T TENSOR REMARK 3 T11: 0.3300 T22: 0.2986 REMARK 3 T33: 0.2968 T12: 0.0176 REMARK 3 T13: -0.0126 T23: -0.0974 REMARK 3 L TENSOR REMARK 3 L11: 1.3435 L22: 0.6394 REMARK 3 L33: 0.9997 L12: 0.7293 REMARK 3 L13: 0.6105 L23: 0.4865 REMARK 3 S TENSOR REMARK 3 S11: 0.1476 S12: -0.4005 S13: 0.2605 REMARK 3 S21: 0.0997 S22: -0.2912 S23: 0.1457 REMARK 3 S31: -0.2756 S32: -0.2481 S33: -0.0034 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 275 THROUGH 366 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.7764 21.6124 -5.6509 REMARK 3 T TENSOR REMARK 3 T11: 0.2100 T22: 0.2224 REMARK 3 T33: 0.2249 T12: -0.0278 REMARK 3 T13: -0.0594 T23: 0.0176 REMARK 3 L TENSOR REMARK 3 L11: 1.6127 L22: 0.9814 REMARK 3 L33: 0.5708 L12: -1.1776 REMARK 3 L13: 0.4755 L23: -0.0544 REMARK 3 S TENSOR REMARK 3 S11: 0.1530 S12: -0.1500 S13: -0.2046 REMARK 3 S21: -0.0170 S22: -0.1044 S23: 0.1917 REMARK 3 S31: 0.0437 S32: -0.1097 S33: 0.0002 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 367 THROUGH 386 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.7219 28.4981 -3.8936 REMARK 3 T TENSOR REMARK 3 T11: 0.2378 T22: 0.4358 REMARK 3 T33: 0.4071 T12: -0.0343 REMARK 3 T13: 0.0004 T23: -0.0626 REMARK 3 L TENSOR REMARK 3 L11: 0.1679 L22: 0.6963 REMARK 3 L33: 0.1457 L12: -0.0593 REMARK 3 L13: -0.0845 L23: -0.0835 REMARK 3 S TENSOR REMARK 3 S11: 0.1190 S12: -0.2287 S13: -0.2231 REMARK 3 S21: 0.2752 S22: -0.1694 S23: 0.9457 REMARK 3 S31: -0.1214 S32: -0.2930 S33: -0.0125 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7A3V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1292110734. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-FEB-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61476 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 42.870 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 17.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.12400 REMARK 200 FOR THE DATA SET : 13.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 1.64100 REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1PUD REMARK 200 REMARK 200 REMARK: HEXAGONAL BIPYRAMIDAL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS, PH 8.5, 4% PEG 6000, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 283.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.01200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 38.50600 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 57.75900 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 19.25300 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 96.26500 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 77.01200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 38.50600 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 19.25300 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 57.75900 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 96.26500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -19.25300 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 655 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 703 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 710 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 GLU A 3 REMARK 465 ALA A 4 REMARK 465 THR A 5 REMARK 465 ALA A 6 REMARK 465 GLN A 7 REMARK 465 GLU A 8 REMARK 465 THR A 9 REMARK 465 ALA A 48 REMARK 465 ALA A 49 REMARK 465 THR A 50 REMARK 465 VAL A 51 REMARK 465 LYS A 52 REMARK 465 SER A 113 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 10 CG OD1 OD2 REMARK 470 ARG A 11 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 33 NZ REMARK 470 LYS A 85 CG CD CE NZ REMARK 470 LEU A 114 CD1 CD2 REMARK 470 THR A 115 OG1 CG2 REMARK 470 LYS A 116 CG CD CE NZ REMARK 470 GLN A 117 CG CD OE1 NE2 REMARK 470 LYS A 125 CG CD CE NZ REMARK 470 ARG A 132 CG CD NE CZ NH1 NH2 REMARK 470 THR A 159 OG1 CG2 REMARK 470 SER A 166 OG REMARK 470 ARG A 167 CD NE CZ NH1 NH2 REMARK 470 SER A 170 OG REMARK 470 LYS A 180 CD CE NZ REMARK 470 LYS A 190 CG CD CE NZ REMARK 470 GLU A 191 CG CD OE1 OE2 REMARK 470 GLU A 220 CD OE1 OE2 REMARK 470 ASP A 238 OD1 OD2 REMARK 470 GLU A 239 CD OE1 OE2 REMARK 470 ARG A 242 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 255 NZ REMARK 470 LYS A 264 NZ REMARK 470 ARG A 286 NE CZ NH1 NH2 REMARK 470 ARG A 289 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 306 NH1 NH2 REMARK 470 ILE A 340 CD1 REMARK 470 MET A 344 CE REMARK 470 GLN A 375 CD OE1 NE2 REMARK 470 ARG A 384 CD NE CZ NH1 NH2 REMARK 470 ASN A 385 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 14 112.27 -162.74 REMARK 500 ARG A 77 118.95 -160.61 REMARK 500 SER A 205 -134.60 55.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 318 SG REMARK 620 2 CYS A 320 SG 106.2 REMARK 620 3 CYS A 323 SG 114.2 114.8 REMARK 620 4 HIS A 349 ND1 106.5 114.6 100.4 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7A0B RELATED DB: PDB REMARK 900 7A0B CONTAINS THE SAME PROTEIN COMPLEXED WITH A DIFFERENT FRAGMENT. DBREF 7A3V A 1 386 UNP P28720 TGT_ZYMMO 1 386 SEQADV 7A3V GLY A -1 UNP P28720 EXPRESSION TAG SEQADV 7A3V SER A 0 UNP P28720 EXPRESSION TAG SEQADV 7A3V SER A 158 UNP P28720 CYS 158 ENGINEERED MUTATION SEQADV 7A3V SER A 281 UNP P28720 CYS 281 ENGINEERED MUTATION SEQADV 7A3V LYS A 312 UNP P28720 THR 312 ENGINEERED MUTATION SEQADV 7A3V CYS A 330 UNP P28720 TYR 330 ENGINEERED MUTATION SEQADV 7A3V ALA A 333 UNP P28720 HIS 333 ENGINEERED MUTATION SEQRES 1 A 388 GLY SER MET VAL GLU ALA THR ALA GLN GLU THR ASP ARG SEQRES 2 A 388 PRO ARG PHE SER PHE SER ILE ALA ALA ARG GLU GLY LYS SEQRES 3 A 388 ALA ARG THR GLY THR ILE GLU MET LYS ARG GLY VAL ILE SEQRES 4 A 388 ARG THR PRO ALA PHE MET PRO VAL GLY THR ALA ALA THR SEQRES 5 A 388 VAL LYS ALA LEU LYS PRO GLU THR VAL ARG ALA THR GLY SEQRES 6 A 388 ALA ASP ILE ILE LEU GLY ASN THR TYR HIS LEU MET LEU SEQRES 7 A 388 ARG PRO GLY ALA GLU ARG ILE ALA LYS LEU GLY GLY LEU SEQRES 8 A 388 HIS SER PHE MET GLY TRP ASP ARG PRO ILE LEU THR ASP SEQRES 9 A 388 SER GLY GLY TYR GLN VAL MET SER LEU SER SER LEU THR SEQRES 10 A 388 LYS GLN SER GLU GLU GLY VAL THR PHE LYS SER HIS LEU SEQRES 11 A 388 ASP GLY SER ARG HIS MET LEU SER PRO GLU ARG SER ILE SEQRES 12 A 388 GLU ILE GLN HIS LEU LEU GLY SER ASP ILE VAL MET ALA SEQRES 13 A 388 PHE ASP GLU SER THR PRO TYR PRO ALA THR PRO SER ARG SEQRES 14 A 388 ALA ALA SER SER MET GLU ARG SER MET ARG TRP ALA LYS SEQRES 15 A 388 ARG SER ARG ASP ALA PHE ASP SER ARG LYS GLU GLN ALA SEQRES 16 A 388 GLU ASN ALA ALA LEU PHE GLY ILE GLN GLN GLY SER VAL SEQRES 17 A 388 PHE GLU ASN LEU ARG GLN GLN SER ALA ASP ALA LEU ALA SEQRES 18 A 388 GLU ILE GLY PHE ASP GLY TYR ALA VAL GLY GLY LEU ALA SEQRES 19 A 388 VAL GLY GLU GLY GLN ASP GLU MET PHE ARG VAL LEU ASP SEQRES 20 A 388 PHE SER VAL PRO MET LEU PRO ASP ASP LYS PRO HIS TYR SEQRES 21 A 388 LEU MET GLY VAL GLY LYS PRO ASP ASP ILE VAL GLY ALA SEQRES 22 A 388 VAL GLU ARG GLY ILE ASP MET PHE ASP SER VAL LEU PRO SEQRES 23 A 388 THR ARG SER GLY ARG ASN GLY GLN ALA PHE THR TRP ASP SEQRES 24 A 388 GLY PRO ILE ASN ILE ARG ASN ALA ARG PHE SER GLU ASP SEQRES 25 A 388 LEU LYS PRO LEU ASP SER GLU CYS HIS CYS ALA VAL CYS SEQRES 26 A 388 GLN LYS TRP SER ARG ALA CYS ILE HIS ALA LEU ILE ARG SEQRES 27 A 388 ALA GLY GLU ILE LEU GLY ALA MET LEU MET THR GLU HIS SEQRES 28 A 388 ASN ILE ALA PHE TYR GLN GLN LEU MET GLN LYS ILE ARG SEQRES 29 A 388 ASP SER ILE SER GLU GLY ARG PHE SER GLN PHE ALA GLN SEQRES 30 A 388 ASP PHE ARG ALA ARG TYR PHE ALA ARG ASN SER HET ZN A 401 1 HET GOL A 402 6 HET GOL A 403 6 HET QXE A 404 8 HET QXE A 405 8 HET EDO A 406 4 HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETNAM QXE 3-HYDROXYTHIETANE-1,1-DIOXIDE HETNAM EDO 1,2-ETHANEDIOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN QXE (3~{R})-1,1-BIS(OXIDANYLIDENE)THIOLAN-3-OL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 ZN ZN 2+ FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 QXE 2(C4 H8 O3 S) FORMUL 7 EDO C2 H6 O2 FORMUL 8 HOH *211(H2 O) HELIX 1 AA1 LYS A 55 THR A 62 1 8 HELIX 2 AA2 ASN A 70 ARG A 77 1 8 HELIX 3 AA3 GLY A 79 LEU A 86 1 8 HELIX 4 AA4 GLY A 88 GLY A 94 1 7 HELIX 5 AA5 GLY A 104 SER A 112 1 9 HELIX 6 AA6 SER A 136 GLY A 148 1 13 HELIX 7 AA7 THR A 164 SER A 188 1 25 HELIX 8 AA8 ARG A 189 GLU A 194 1 6 HELIX 9 AA9 PHE A 207 GLY A 222 1 16 HELIX 10 AB1 GLY A 236 VAL A 248 1 13 HELIX 11 AB2 PRO A 249 LEU A 251 5 3 HELIX 12 AB3 LYS A 264 GLU A 273 1 10 HELIX 13 AB4 VAL A 282 ASN A 290 1 9 HELIX 14 AB5 ASN A 304 SER A 308 5 5 HELIX 15 AB6 CYS A 320 TRP A 326 1 7 HELIX 16 AB7 SER A 327 ALA A 337 1 11 HELIX 17 AB8 GLU A 339 GLU A 367 1 29 HELIX 18 AB9 ARG A 369 ARG A 384 1 16 SHEET 1 AA1 3 PHE A 14 GLU A 22 0 SHEET 2 AA1 3 ALA A 25 MET A 32 -1 O GLU A 31 N SER A 15 SHEET 3 AA1 3 GLY A 35 THR A 39 -1 O ILE A 37 N ILE A 30 SHEET 1 AA2 8 ALA A 41 PRO A 44 0 SHEET 2 AA2 8 MET A 278 SER A 281 1 O PHE A 279 N MET A 43 SHEET 3 AA2 8 HIS A 257 LEU A 259 1 N LEU A 259 O MET A 278 SHEET 4 AA2 8 GLY A 225 VAL A 228 1 N VAL A 228 O TYR A 258 SHEET 5 AA2 8 ALA A 197 GLN A 202 1 N GLN A 202 O ALA A 227 SHEET 6 AA2 8 ILE A 151 MET A 153 1 N VAL A 152 O ALA A 197 SHEET 7 AA2 8 ILE A 99 THR A 101 1 N THR A 101 O ILE A 151 SHEET 8 AA2 8 ILE A 67 GLY A 69 1 N GLY A 69 O LEU A 100 SHEET 1 AA3 3 LYS A 116 SER A 118 0 SHEET 2 AA3 3 GLY A 121 LYS A 125 -1 O THR A 123 N LYS A 116 SHEET 3 AA3 3 ARG A 132 LEU A 135 -1 O LEU A 135 N VAL A 122 SHEET 1 AA4 2 GLN A 292 ALA A 293 0 SHEET 2 AA4 2 ILE A 300 ASN A 301 -1 O ILE A 300 N ALA A 293 SSBOND 1 CYS A 330 CYS A 330 1555 12554 2.03 LINK SG CYS A 318 ZN ZN A 401 1555 1555 2.33 LINK SG CYS A 320 ZN ZN A 401 1555 1555 2.30 LINK SG CYS A 323 ZN ZN A 401 1555 1555 2.29 LINK ND1 HIS A 349 ZN ZN A 401 1555 1555 2.13 CISPEP 1 THR A 39 PRO A 40 0 -0.02 CISPEP 2 ARG A 77 PRO A 78 0 2.06 CISPEP 3 TYR A 161 PRO A 162 0 -6.85 CISPEP 4 VAL A 262 GLY A 263 0 1.10 CRYST1 127.959 127.959 115.518 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007815 0.004512 0.000000 0.00000 SCALE2 0.000000 0.009024 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008657 0.00000