HEADER DE NOVO PROTEIN 20-AUG-20 7A4T TITLE CRYSTAL STRUCTURE OF THE GCN COILED-COIL IN COMPLEX WITH NANOBODY NB39 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NANOBODY NB39; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: GCN4 ISOFORM 1; COMPND 7 CHAIN: B, C; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 3 ORGANISM_TAXID: 9844; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 9 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 10 ORGANISM_TAXID: 4932 KEYWDS COILED-COIL, NANOBODY, ANTIBODY, PROTEIN DESIGN, DE NOVO PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.HADZI REVDAT 3 01-MAY-24 7A4T 1 REMARK REVDAT 2 11-AUG-21 7A4T 1 REMARK REVDAT 1 05-MAY-21 7A4T 0 JRNL AUTH A.MAJERLE,S.HADZI,J.AUPIC,T.SATLER,F.LAPENTA,Z.STRMSEK, JRNL AUTH 2 J.LAH,R.LORIS,R.JERALA JRNL TITL A NANOBODY TOOLBOX TARGETING DIMERIC COILED-COIL MODULES FOR JRNL TITL 2 FUNCTIONALIZATION OF DESIGNED PROTEIN ORIGAMI STRUCTURES. JRNL REF PROC.NATL.ACAD.SCI.USA V. 118 2021 JRNL REFN ESSN 1091-6490 JRNL PMID 33893235 JRNL DOI 10.1073/PNAS.2021899118 REMARK 2 REMARK 2 RESOLUTION. 2.12 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.12 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.69 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 12227 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 612 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 3.3712 - 2.6759 1.00 2889 152 0.1985 0.2718 REMARK 3 2 2.6759 - 2.3376 1.00 2853 150 0.2210 0.2686 REMARK 3 3 2.3376 - 2.1240 0.99 2799 148 0.2239 0.2864 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.020 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.61 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1407 REMARK 3 ANGLE : 0.872 1899 REMARK 3 CHIRALITY : 0.053 207 REMARK 3 PLANARITY : 0.005 244 REMARK 3 DIHEDRAL : 6.336 1021 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 1 THROUGH 121) REMARK 3 ORIGIN FOR THE GROUP (A): 21.7445 105.1690 127.9420 REMARK 3 T TENSOR REMARK 3 T11: 0.2545 T22: 0.2640 REMARK 3 T33: 0.3005 T12: 0.0143 REMARK 3 T13: -0.0262 T23: -0.0068 REMARK 3 L TENSOR REMARK 3 L11: 1.9596 L22: 1.7018 REMARK 3 L33: 5.5119 L12: 0.3959 REMARK 3 L13: -0.2964 L23: -0.5310 REMARK 3 S TENSOR REMARK 3 S11: 0.0258 S12: -0.1408 S13: 0.0188 REMARK 3 S21: 0.0547 S22: -0.0291 S23: -0.1539 REMARK 3 S31: 0.0922 S32: 0.2712 S33: 0.0207 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 0 THROUGH 26) REMARK 3 ORIGIN FOR THE GROUP (A): 30.4270 109.4009 149.5904 REMARK 3 T TENSOR REMARK 3 T11: 0.4707 T22: 0.6472 REMARK 3 T33: 0.5293 T12: -0.0463 REMARK 3 T13: -0.0839 T23: -0.0907 REMARK 3 L TENSOR REMARK 3 L11: 4.5392 L22: 2.8640 REMARK 3 L33: 3.8857 L12: 3.5201 REMARK 3 L13: -4.1184 L23: -3.2310 REMARK 3 S TENSOR REMARK 3 S11: 0.2486 S12: -0.9306 S13: -0.3944 REMARK 3 S21: 0.4823 S22: -0.0310 S23: -0.7814 REMARK 3 S31: -0.3061 S32: 1.0166 S33: -0.4116 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'C' AND RESID 0 THROUGH 27) REMARK 3 ORIGIN FOR THE GROUP (A): 28.0820 108.5636 141.3123 REMARK 3 T TENSOR REMARK 3 T11: 0.4341 T22: 0.7484 REMARK 3 T33: 0.3807 T12: -0.0290 REMARK 3 T13: -0.1066 T23: -0.0837 REMARK 3 L TENSOR REMARK 3 L11: 4.3022 L22: 5.8289 REMARK 3 L33: 5.4233 L12: 0.0731 REMARK 3 L13: -4.8085 L23: 0.3176 REMARK 3 S TENSOR REMARK 3 S11: 0.0805 S12: 0.2946 S13: 0.2842 REMARK 3 S21: -0.1302 S22: -0.0657 S23: -0.3725 REMARK 3 S31: -0.3731 S32: 0.6482 S33: -0.0388 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7A4T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1292110846. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUL-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2-8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.980127 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12227 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.124 REMARK 200 RESOLUTION RANGE LOW (A) : 47.691 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 20.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.4500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.13 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: MODELER REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM FORMATE 20 % W/V PEG REMARK 280 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 14555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 16555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 17555 X+1/2,Z+1/2,-Y+1/2 REMARK 290 18555 -X+1/2,Z+1/2,Y+1/2 REMARK 290 19555 -X+1/2,-Z+1/2,-Y+1/2 REMARK 290 20555 X+1/2,-Z+1/2,Y+1/2 REMARK 290 21555 Z+1/2,Y+1/2,-X+1/2 REMARK 290 22555 Z+1/2,-Y+1/2,X+1/2 REMARK 290 23555 -Z+1/2,Y+1/2,X+1/2 REMARK 290 24555 -Z+1/2,-Y+1/2,-X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 53.32000 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 53.32000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 53.32000 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 53.32000 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 53.32000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 53.32000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 53.32000 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 53.32000 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 53.32000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 53.32000 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 53.32000 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 53.32000 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 53.32000 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 53.32000 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 53.32000 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 53.32000 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 53.32000 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 53.32000 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 53.32000 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 53.32000 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 53.32000 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 53.32000 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 53.32000 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 53.32000 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 53.32000 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 53.32000 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 53.32000 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 53.32000 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 53.32000 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 53.32000 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 53.32000 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 53.32000 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 53.32000 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 53.32000 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 53.32000 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 53.32000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -71.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 350 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 373 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 205 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 207 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 122 REMARK 465 TYR A 123 REMARK 465 PRO A 124 REMARK 465 TYR A 125 REMARK 465 ASP A 126 REMARK 465 VAL A 127 REMARK 465 PRO A 128 REMARK 465 ASP A 129 REMARK 465 TYR A 130 REMARK 465 GLY A 131 REMARK 465 SER A 132 REMARK 465 GLY A 133 REMARK 465 ARG A 134 REMARK 465 ALA A 135 REMARK 465 VAL B 27 REMARK 465 GLY B 28 REMARK 465 NH2 B 29 REMARK 465 ACE C 0 REMARK 465 NH2 C 29 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 1 CG CD OE1 NE2 REMARK 470 ARG A 54 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 21 CG CD OE1 OE2 REMARK 470 LYS B 25 CG CD CE NZ REMARK 470 LEU B 26 CG CD1 CD2 REMARK 470 GLN C 1 N CB CG CD OE1 NE2 REMARK 470 LYS C 25 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 37 O HOH A 301 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 74 -35.38 -134.27 REMARK 500 ALA A 91 165.15 178.72 REMARK 500 LYS B 24 -72.03 -70.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7A48 RELATED DB: PDB REMARK 900 RELATED ID: 7A4D RELATED DB: PDB DBREF 7A4T A 1 135 PDB 7A4T 7A4T 1 135 DBREF1 7A4T B 1 28 UNP A0A6A5PZY2_YEASX DBREF2 7A4T B A0A6A5PZY2 252 279 DBREF1 7A4T C 1 28 UNP A0A6A5PZY2_YEASX DBREF2 7A4T C A0A6A5PZY2 252 279 SEQADV 7A4T ACE B 0 UNP A0A6A5PZY EXPRESSION TAG SEQADV 7A4T GLU B 21 UNP A0A6A5PZY ALA 272 CONFLICT SEQADV 7A4T NH2 B 29 UNP A0A6A5PZY EXPRESSION TAG SEQADV 7A4T ACE C 0 UNP A0A6A5PZY EXPRESSION TAG SEQADV 7A4T GLU C 21 UNP A0A6A5PZY ALA 272 CONFLICT SEQADV 7A4T NH2 C 29 UNP A0A6A5PZY EXPRESSION TAG SEQRES 1 A 135 GLN VAL GLN LEU GLN GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 A 135 ALA GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 A 135 SER ILE PHE SER ILE ASN VAL MET GLY TRP TYR ARG GLN SEQRES 4 A 135 ALA PRO GLY LYS GLN ARG GLU LEU LEU ALA SER ILE THR SEQRES 5 A 135 SER ARG GLY SER THR ASN TYR ALA ASP SER VAL LYS ASP SEQRES 6 A 135 ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN THR VAL SEQRES 7 A 135 TYR LEU GLN ILE ASN SER LEU LYS PRO GLU ASP THR ALA SEQRES 8 A 135 VAL TYR TYR CYS ASN SER ARG GLY TRP THR THR THR ARG SEQRES 9 A 135 GLY ASP TYR ASP TYR TRP GLY GLN GLY THR GLN VAL THR SEQRES 10 A 135 VAL SER SER GLY ARG TYR PRO TYR ASP VAL PRO ASP TYR SEQRES 11 A 135 GLY SER GLY ARG ALA SEQRES 1 B 30 ACE GLN LEU GLU ASP LYS VAL GLU GLU LEU LEU SER LYS SEQRES 2 B 30 ASN TYR HIS LEU GLU ASN GLU VAL GLU ARG LEU LYS LYS SEQRES 3 B 30 LEU VAL GLY NH2 SEQRES 1 C 30 ACE GLN LEU GLU ASP LYS VAL GLU GLU LEU LEU SER LYS SEQRES 2 C 30 ASN TYR HIS LEU GLU ASN GLU VAL GLU ARG LEU LYS LYS SEQRES 3 C 30 LEU VAL GLY NH2 HET ACE B 0 3 HET SO4 A 201 5 HET SO4 A 202 5 HET SO4 A 203 5 HET ACE A 204 3 HET EDO A 205 4 HET SO4 B 101 5 HETNAM ACE ACETYL GROUP HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 ACE 2(C2 H4 O) FORMUL 4 SO4 4(O4 S 2-) FORMUL 8 EDO C2 H6 O2 FORMUL 10 HOH *97(H2 O) HELIX 1 AA1 ASP A 61 LYS A 64 5 4 HELIX 2 AA2 LYS A 86 THR A 90 5 5 HELIX 3 AA3 GLN B 1 LEU B 26 1 26 HELIX 4 AA4 LEU C 2 GLY C 28 1 27 SHEET 1 AA1 4 VAL A 2 SER A 7 0 SHEET 2 AA1 4 LEU A 18 GLY A 26 -1 O SER A 25 N GLN A 3 SHEET 3 AA1 4 THR A 77 ILE A 82 -1 O ILE A 82 N LEU A 18 SHEET 4 AA1 4 PHE A 67 ARG A 71 -1 N SER A 70 O TYR A 79 SHEET 1 AA2 6 GLY A 10 GLN A 13 0 SHEET 2 AA2 6 THR A 114 SER A 119 1 O SER A 119 N VAL A 12 SHEET 3 AA2 6 ALA A 91 THR A 101 -1 N ALA A 91 O VAL A 116 SHEET 4 AA2 6 VAL A 33 GLN A 39 -1 N TYR A 37 O TYR A 94 SHEET 5 AA2 6 GLU A 46 THR A 52 -1 O LEU A 48 N TRP A 36 SHEET 6 AA2 6 THR A 57 TYR A 59 -1 O ASN A 58 N SER A 50 SHEET 1 AA3 4 GLY A 10 GLN A 13 0 SHEET 2 AA3 4 THR A 114 SER A 119 1 O SER A 119 N VAL A 12 SHEET 3 AA3 4 ALA A 91 THR A 101 -1 N ALA A 91 O VAL A 116 SHEET 4 AA3 4 GLY A 105 TRP A 110 -1 O TYR A 109 N SER A 97 SSBOND 1 CYS A 22 CYS A 95 1555 1555 2.04 LINK C ACE B 0 N GLN B 1 1555 1555 1.34 CRYST1 106.640 106.640 106.640 90.00 90.00 90.00 P 42 3 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009377 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009377 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009377 0.00000