HEADER MOTOR PROTEIN 21-AUG-20 7A5E TITLE OSM-3 KINESIN MOTOR DOMAIN COMPLEXED WITH MG.AMPPNP COMPND MOL_ID: 1; COMPND 2 MOLECULE: OSMOTIC AVOIDANCE ABNORMAL PROTEIN 3; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: KINESIN-LIKE PROTEIN OSM-3; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: ALANINE INSERTION AT POSITION 2 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; SOURCE 3 ORGANISM_TAXID: 6239; SOURCE 4 GENE: OSM-3, M02B7.3; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS KINESIN-2, KIF17, MOTOR DOMAIN, ATPASE, MOTOR PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR F.P.VARELA,J.MENETREY,B.GIGANT REVDAT 4 31-JAN-24 7A5E 1 REMARK REVDAT 3 17-MAR-21 7A5E 1 JRNL REVDAT 2 10-FEB-21 7A5E 1 JRNL REVDAT 1 03-FEB-21 7A5E 0 JRNL AUTH P.F.VARELA,M.CHENON,C.VELOURS,K.J.VERHEY,J.MENETREY,B.GIGANT JRNL TITL STRUCTURAL SNAPSHOTS OF THE KINESIN-2 OSM-3 ALONG ITS JRNL TITL 2 NUCLEOTIDE CYCLE: IMPLICATIONS FOR THE ATP HYDROLYSIS JRNL TITL 3 MECHANISM. JRNL REF FEBS OPEN BIO V. 11 564 2021 JRNL REFN ESSN 2211-5463 JRNL PMID 33513284 JRNL DOI 10.1002/2211-5463.13101 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 56649 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2833 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.92 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.19 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.4198 REMARK 3 BIN FREE R VALUE : 0.4965 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 57 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5160 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 126 REMARK 3 SOLVENT ATOMS : 218 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -12.33080 REMARK 3 B22 (A**2) : 9.39150 REMARK 3 B33 (A**2) : 2.93930 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.300 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.158 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.137 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.157 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.137 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5398 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 7311 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1921 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 952 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5398 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 723 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4266 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 0.95 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.30 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 15.60 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|1 - A|79 A|90 - A|126 A|295 - A|551 } REMARK 3 ORIGIN FOR THE GROUP (A): 3.3891 -16.2737 -1.7721 REMARK 3 T TENSOR REMARK 3 T11: 0.1196 T22: -0.2227 REMARK 3 T33: -0.1587 T12: -0.0461 REMARK 3 T13: -0.0586 T23: -0.0472 REMARK 3 L TENSOR REMARK 3 L11: 1.1977 L22: 1.506 REMARK 3 L33: 2.9282 L12: 0.1951 REMARK 3 L13: -0.1712 L23: -0.2862 REMARK 3 S TENSOR REMARK 3 S11: 0.2003 S12: 0.5442 S13: -0.5442 REMARK 3 S21: 0.5442 S22: 0.0101 S23: 0.2802 REMARK 3 S31: -0.5442 S32: 0.2802 S33: -0.2104 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|1 - B|79 B|90 - B|126 B|295 - B|551 } REMARK 3 ORIGIN FOR THE GROUP (A): -16.4501 -45.6448 -33.2096 REMARK 3 T TENSOR REMARK 3 T11: -0.0704 T22: -0.023 REMARK 3 T33: -0.1531 T12: -0.0814 REMARK 3 T13: -0.0144 T23: 0.0618 REMARK 3 L TENSOR REMARK 3 L11: 1.8988 L22: 1.7916 REMARK 3 L33: 2.808 L12: 0.1259 REMARK 3 L13: 0.6885 L23: -0.3005 REMARK 3 S TENSOR REMARK 3 S11: -0.0823 S12: -0.3192 S13: -0.0385 REMARK 3 S21: -0.3192 S22: 0.1713 S23: 0.0978 REMARK 3 S31: -0.0385 S32: 0.0978 S33: -0.089 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { A|80 - A|89 A|127 - A|155 A|171 - A|238 } REMARK 3 ORIGIN FOR THE GROUP (A): -9.7092 -18.6145 -13.1936 REMARK 3 T TENSOR REMARK 3 T11: -0.0311 T22: -0.1093 REMARK 3 T33: -0.0414 T12: 0.0763 REMARK 3 T13: 0.0611 T23: 0.0251 REMARK 3 L TENSOR REMARK 3 L11: 1.3037 L22: 2.6303 REMARK 3 L33: 2.8775 L12: 0.1668 REMARK 3 L13: -0.1805 L23: -1.0958 REMARK 3 S TENSOR REMARK 3 S11: 0.153 S12: 0.521 S13: -0.4228 REMARK 3 S21: 0.521 S22: 0.1603 S23: -0.3032 REMARK 3 S31: -0.4228 S32: -0.3032 S33: -0.3133 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { B|80 - B|89 B|127 - B|155 B|171 - B|238 } REMARK 3 ORIGIN FOR THE GROUP (A): -16.9234 -59.772 -22.7883 REMARK 3 T TENSOR REMARK 3 T11: 0.0056 T22: -0.1115 REMARK 3 T33: -0.0894 T12: -0.0465 REMARK 3 T13: -0.0275 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 1.71 L22: 1.8522 REMARK 3 L33: 2.2415 L12: 0.1796 REMARK 3 L13: 0.6344 L23: -0.7373 REMARK 3 S TENSOR REMARK 3 S11: 0.0193 S12: -0.1911 S13: 0.5442 REMARK 3 S21: -0.1911 S22: 0.1365 S23: -0.0081 REMARK 3 S31: 0.5442 S32: -0.0081 S33: -0.1559 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: { A|156 - A|170 A|239 - A|294 } REMARK 3 ORIGIN FOR THE GROUP (A): -8.1333 -32.1774 -5.1854 REMARK 3 T TENSOR REMARK 3 T11: 0.0358 T22: -0.1253 REMARK 3 T33: -0.0719 T12: -0.0117 REMARK 3 T13: -0.0184 T23: 0.0359 REMARK 3 L TENSOR REMARK 3 L11: 1.0936 L22: 3.0908 REMARK 3 L33: 1.9939 L12: 0.4603 REMARK 3 L13: -0.0371 L23: -0.7072 REMARK 3 S TENSOR REMARK 3 S11: 0.1048 S12: 0.5442 S13: 0.0216 REMARK 3 S21: 0.5442 S22: 0.1062 S23: -0.1072 REMARK 3 S31: 0.0216 S32: -0.1072 S33: -0.211 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: { B|156 - B|170 B|239 - B|294 } REMARK 3 ORIGIN FOR THE GROUP (A): -31.0344 -59.351 -31.2228 REMARK 3 T TENSOR REMARK 3 T11: -0.0634 T22: -0.0164 REMARK 3 T33: -0.1255 T12: -0.152 REMARK 3 T13: -0.0981 T23: 0.0544 REMARK 3 L TENSOR REMARK 3 L11: 3.0782 L22: 3.0787 REMARK 3 L33: 2.2109 L12: 0.821 REMARK 3 L13: 0.4589 L23: 0.1432 REMARK 3 S TENSOR REMARK 3 S11: 0.0304 S12: -0.2979 S13: 0.3611 REMARK 3 S21: -0.2979 S22: 0.2011 S23: -0.4837 REMARK 3 S31: 0.3611 S32: -0.4837 S33: -0.2315 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7A5E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1292110876. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979338 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56649 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.904 REMARK 200 RESOLUTION RANGE LOW (A) : 48.040 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 13.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7A3Z REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) POLYETHYLENE GLYCOL 3350, REMARK 280 170 MM (NH4)2SO4, AND 0.1 M MES BUFFER PH 6.5, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.47500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.47500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 50.01500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.10000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 50.01500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.10000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 70.47500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 50.01500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 51.10000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 70.47500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 50.01500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 51.10000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 GLU A 339 REMARK 465 HIS A 340 REMARK 465 HIS A 341 REMARK 465 HIS A 342 REMARK 465 HIS A 343 REMARK 465 HIS A 344 REMARK 465 HIS A 345 REMARK 465 MET B 0 REMARK 465 ASP B 162 REMARK 465 ARG B 163 REMARK 465 LEU B 338 REMARK 465 GLU B 339 REMARK 465 HIS B 340 REMARK 465 HIS B 341 REMARK 465 HIS B 342 REMARK 465 HIS B 343 REMARK 465 HIS B 344 REMARK 465 HIS B 345 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 338 CG CD1 CD2 REMARK 470 LYS B 152 CG CD CE NZ REMARK 470 GLN B 160 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 200 112.76 -161.20 REMARK 500 LYS A 273 -21.16 -148.46 REMARK 500 ASN B 200 112.34 -161.60 REMARK 500 LYS B 273 -22.84 -145.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 94 OG1 REMARK 620 2 SER A 204 OG 86.5 REMARK 620 3 ANP A 401 O3G 168.3 82.7 REMARK 620 4 ANP A 401 O2B 98.3 168.5 91.5 REMARK 620 5 HOH A 505 O 93.4 83.9 89.9 106.1 REMARK 620 6 HOH A 511 O 81.3 83.8 93.0 86.6 166.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 94 OG1 REMARK 620 2 SER B 204 OG 87.5 REMARK 620 3 ANP B 401 O3G 175.6 88.3 REMARK 620 4 ANP B 401 O2B 94.1 177.8 90.1 REMARK 620 5 HOH B 511 O 87.8 88.7 93.7 89.8 REMARK 620 6 HOH B 523 O 89.7 85.4 88.4 96.1 173.7 REMARK 620 N 1 2 3 4 5 DBREF 7A5E A 2 337 UNP P46873 OSM3_CAEEL 2 337 DBREF 7A5E B 2 337 UNP P46873 OSM3_CAEEL 2 337 SEQADV 7A5E MET A 0 UNP P46873 INITIATING METHIONINE SEQADV 7A5E ALA A 1 UNP P46873 EXPRESSION TAG SEQADV 7A5E LEU A 338 UNP P46873 EXPRESSION TAG SEQADV 7A5E GLU A 339 UNP P46873 EXPRESSION TAG SEQADV 7A5E HIS A 340 UNP P46873 EXPRESSION TAG SEQADV 7A5E HIS A 341 UNP P46873 EXPRESSION TAG SEQADV 7A5E HIS A 342 UNP P46873 EXPRESSION TAG SEQADV 7A5E HIS A 343 UNP P46873 EXPRESSION TAG SEQADV 7A5E HIS A 344 UNP P46873 EXPRESSION TAG SEQADV 7A5E HIS A 345 UNP P46873 EXPRESSION TAG SEQADV 7A5E MET B 0 UNP P46873 INITIATING METHIONINE SEQADV 7A5E ALA B 1 UNP P46873 EXPRESSION TAG SEQADV 7A5E LEU B 338 UNP P46873 EXPRESSION TAG SEQADV 7A5E GLU B 339 UNP P46873 EXPRESSION TAG SEQADV 7A5E HIS B 340 UNP P46873 EXPRESSION TAG SEQADV 7A5E HIS B 341 UNP P46873 EXPRESSION TAG SEQADV 7A5E HIS B 342 UNP P46873 EXPRESSION TAG SEQADV 7A5E HIS B 343 UNP P46873 EXPRESSION TAG SEQADV 7A5E HIS B 344 UNP P46873 EXPRESSION TAG SEQADV 7A5E HIS B 345 UNP P46873 EXPRESSION TAG SEQRES 1 A 346 MET ALA ALA GLU SER VAL ARG VAL ALA VAL ARG CYS ARG SEQRES 2 A 346 PRO PHE ASN GLN ARG GLU LYS ASP LEU ASN THR THR LEU SEQRES 3 A 346 CYS VAL GLY MET THR PRO ASN VAL GLY GLN VAL ASN LEU SEQRES 4 A 346 ASN ALA PRO ASP GLY ALA ALA LYS ASP PHE THR PHE ASP SEQRES 5 A 346 GLY ALA TYR PHE MET ASP SER THR GLY GLU GLN ILE TYR SEQRES 6 A 346 ASN ASP ILE VAL PHE PRO LEU VAL GLU ASN VAL ILE GLU SEQRES 7 A 346 GLY TYR ASN GLY THR VAL PHE ALA TYR GLY GLN THR GLY SEQRES 8 A 346 SER GLY LYS THR PHE SER MET GLN GLY ILE GLU THR ILE SEQRES 9 A 346 PRO ALA GLN ARG GLY VAL ILE PRO ARG ALA PHE ASP HIS SEQRES 10 A 346 ILE PHE THR ALA THR ALA THR THR GLU ASN VAL LYS PHE SEQRES 11 A 346 LEU VAL HIS CYS SER TYR LEU GLU ILE TYR ASN GLU GLU SEQRES 12 A 346 VAL ARG ASP LEU LEU GLY ALA ASP ASN LYS GLN LYS LEU SEQRES 13 A 346 GLU ILE LYS GLU GLN PRO ASP ARG GLY VAL TYR VAL ALA SEQRES 14 A 346 GLY LEU SER MET HIS VAL CYS HIS ASP VAL PRO ALA CYS SEQRES 15 A 346 LYS GLU LEU MET THR ARG GLY PHE ASN ASN ARG HIS VAL SEQRES 16 A 346 GLY ALA THR LEU MET ASN LYS ASP SER SER ARG SER HIS SEQRES 17 A 346 SER ILE PHE THR VAL TYR VAL GLU GLY MET THR GLU THR SEQRES 18 A 346 GLY SER ILE ARG MET GLY LYS LEU ASN LEU VAL ASP LEU SEQRES 19 A 346 ALA GLY SER GLU ARG GLN SER LYS THR GLY ALA THR GLY SEQRES 20 A 346 ASP ARG LEU LYS GLU ALA THR LYS ILE ASN LEU SER LEU SEQRES 21 A 346 SER ALA LEU GLY ASN VAL ILE SER ALA LEU VAL ASP GLY SEQRES 22 A 346 LYS SER LYS HIS ILE PRO TYR ARG ASP SER LYS LEU THR SEQRES 23 A 346 ARG LEU LEU GLN ASP SER LEU GLY GLY ASN THR LYS THR SEQRES 24 A 346 ILE MET ILE ALA CYS VAL SER PRO SER SER ASP ASN TYR SEQRES 25 A 346 ASP GLU THR LEU SER THR LEU ARG TYR ALA ASN ARG ALA SEQRES 26 A 346 LYS ASN ILE LYS ASN LYS PRO THR ILE ASN GLU ASP PRO SEQRES 27 A 346 LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 346 MET ALA ALA GLU SER VAL ARG VAL ALA VAL ARG CYS ARG SEQRES 2 B 346 PRO PHE ASN GLN ARG GLU LYS ASP LEU ASN THR THR LEU SEQRES 3 B 346 CYS VAL GLY MET THR PRO ASN VAL GLY GLN VAL ASN LEU SEQRES 4 B 346 ASN ALA PRO ASP GLY ALA ALA LYS ASP PHE THR PHE ASP SEQRES 5 B 346 GLY ALA TYR PHE MET ASP SER THR GLY GLU GLN ILE TYR SEQRES 6 B 346 ASN ASP ILE VAL PHE PRO LEU VAL GLU ASN VAL ILE GLU SEQRES 7 B 346 GLY TYR ASN GLY THR VAL PHE ALA TYR GLY GLN THR GLY SEQRES 8 B 346 SER GLY LYS THR PHE SER MET GLN GLY ILE GLU THR ILE SEQRES 9 B 346 PRO ALA GLN ARG GLY VAL ILE PRO ARG ALA PHE ASP HIS SEQRES 10 B 346 ILE PHE THR ALA THR ALA THR THR GLU ASN VAL LYS PHE SEQRES 11 B 346 LEU VAL HIS CYS SER TYR LEU GLU ILE TYR ASN GLU GLU SEQRES 12 B 346 VAL ARG ASP LEU LEU GLY ALA ASP ASN LYS GLN LYS LEU SEQRES 13 B 346 GLU ILE LYS GLU GLN PRO ASP ARG GLY VAL TYR VAL ALA SEQRES 14 B 346 GLY LEU SER MET HIS VAL CYS HIS ASP VAL PRO ALA CYS SEQRES 15 B 346 LYS GLU LEU MET THR ARG GLY PHE ASN ASN ARG HIS VAL SEQRES 16 B 346 GLY ALA THR LEU MET ASN LYS ASP SER SER ARG SER HIS SEQRES 17 B 346 SER ILE PHE THR VAL TYR VAL GLU GLY MET THR GLU THR SEQRES 18 B 346 GLY SER ILE ARG MET GLY LYS LEU ASN LEU VAL ASP LEU SEQRES 19 B 346 ALA GLY SER GLU ARG GLN SER LYS THR GLY ALA THR GLY SEQRES 20 B 346 ASP ARG LEU LYS GLU ALA THR LYS ILE ASN LEU SER LEU SEQRES 21 B 346 SER ALA LEU GLY ASN VAL ILE SER ALA LEU VAL ASP GLY SEQRES 22 B 346 LYS SER LYS HIS ILE PRO TYR ARG ASP SER LYS LEU THR SEQRES 23 B 346 ARG LEU LEU GLN ASP SER LEU GLY GLY ASN THR LYS THR SEQRES 24 B 346 ILE MET ILE ALA CYS VAL SER PRO SER SER ASP ASN TYR SEQRES 25 B 346 ASP GLU THR LEU SER THR LEU ARG TYR ALA ASN ARG ALA SEQRES 26 B 346 LYS ASN ILE LYS ASN LYS PRO THR ILE ASN GLU ASP PRO SEQRES 27 B 346 LEU GLU HIS HIS HIS HIS HIS HIS HET ANP A 401 31 HET MG A 402 1 HET SO4 A 403 5 HET SO4 A 404 5 HET GOL A 405 6 HET GOL A 406 6 HET GOL A 407 6 HET ANP B 401 31 HET MG B 402 1 HET SO4 B 403 5 HET SO4 B 404 5 HET GOL B 405 6 HET GOL B 406 6 HET GOL B 407 6 HET GOL B 408 6 HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ANP 2(C10 H17 N6 O12 P3) FORMUL 4 MG 2(MG 2+) FORMUL 5 SO4 4(O4 S 2-) FORMUL 7 GOL 7(C3 H8 O3) FORMUL 18 HOH *218(H2 O) HELIX 1 AA1 ASN A 15 LEU A 21 1 7 HELIX 2 AA2 PRO A 31 VAL A 33 5 3 HELIX 3 AA3 THR A 59 ILE A 67 1 9 HELIX 4 AA4 ILE A 67 GLY A 78 1 12 HELIX 5 AA5 GLY A 92 GLN A 98 1 7 HELIX 6 AA6 ILE A 103 ARG A 107 5 5 HELIX 7 AA7 GLY A 108 THR A 123 1 16 HELIX 8 AA8 ASP A 177 ARG A 192 1 16 HELIX 9 AA9 ARG A 238 GLY A 243 1 6 HELIX 10 AB1 THR A 245 ASP A 271 1 27 HELIX 11 AB2 PRO A 278 ASP A 281 5 4 HELIX 12 AB3 SER A 282 LEU A 288 1 7 HELIX 13 AB4 SER A 307 ASP A 309 5 3 HELIX 14 AB5 ASN A 310 LYS A 325 1 16 HELIX 15 AB6 ASN B 15 LEU B 21 1 7 HELIX 16 AB7 PRO B 31 VAL B 33 5 3 HELIX 17 AB8 THR B 59 ILE B 67 1 9 HELIX 18 AB9 ILE B 67 GLU B 77 1 11 HELIX 19 AC1 GLY B 92 GLN B 98 1 7 HELIX 20 AC2 ILE B 103 ARG B 107 5 5 HELIX 21 AC3 GLY B 108 THR B 123 1 16 HELIX 22 AC4 ASP B 177 ARG B 192 1 16 HELIX 23 AC5 ARG B 238 GLY B 243 1 6 HELIX 24 AC6 THR B 245 ASP B 271 1 27 HELIX 25 AC7 PRO B 278 ASP B 281 5 4 HELIX 26 AC8 SER B 282 LEU B 288 1 7 HELIX 27 AC9 SER B 307 ASP B 309 5 3 HELIX 28 AD1 ASN B 310 LYS B 325 1 16 SHEET 1 AA1 2 GLU A 3 SER A 4 0 SHEET 2 AA1 2 LYS A 328 ASN A 329 -1 O ASN A 329 N GLU A 3 SHEET 1 AA2 8 GLY A 52 TYR A 54 0 SHEET 2 AA2 8 ARG A 6 CYS A 11 1 N CYS A 11 O TYR A 54 SHEET 3 AA2 8 LYS A 297 VAL A 304 1 O ALA A 302 N ALA A 8 SHEET 4 AA2 8 ASN A 80 TYR A 86 1 N PHE A 84 O ILE A 301 SHEET 5 AA2 8 ILE A 223 ASP A 232 1 O VAL A 231 N VAL A 83 SHEET 6 AA2 8 HIS A 207 THR A 218 -1 N VAL A 212 O LEU A 228 SHEET 7 AA2 8 VAL A 127 TYR A 139 -1 N HIS A 132 O TYR A 213 SHEET 8 AA2 8 HIS A 173 VAL A 174 -1 O HIS A 173 N CYS A 133 SHEET 1 AA3 5 GLU A 142 ASP A 145 0 SHEET 2 AA3 5 VAL A 127 TYR A 139 -1 N GLU A 137 O ARG A 144 SHEET 3 AA3 5 HIS A 207 THR A 218 -1 O TYR A 213 N HIS A 132 SHEET 4 AA3 5 ILE A 223 ASP A 232 -1 O LEU A 228 N VAL A 212 SHEET 5 AA3 5 GLU A 335 ASP A 336 -1 O ASP A 336 N ILE A 223 SHEET 1 AA4 3 VAL A 27 THR A 30 0 SHEET 2 AA4 3 GLN A 35 ASN A 39 -1 O ASN A 37 N GLY A 28 SHEET 3 AA4 3 ALA A 45 THR A 49 -1 O PHE A 48 N VAL A 36 SHEET 1 AA5 2 GLU A 156 GLN A 160 0 SHEET 2 AA5 2 GLY A 164 ALA A 168 -1 O TYR A 166 N LYS A 158 SHEET 1 AA6 2 VAL A 194 THR A 197 0 SHEET 2 AA6 2 ASN A 200 SER A 204 -1 O SER A 203 N GLY A 195 SHEET 1 AA7 2 GLU B 3 SER B 4 0 SHEET 2 AA7 2 LYS B 328 ASN B 329 -1 O ASN B 329 N GLU B 3 SHEET 1 AA8 8 GLY B 52 TYR B 54 0 SHEET 2 AA8 8 ARG B 6 CYS B 11 1 N CYS B 11 O TYR B 54 SHEET 3 AA8 8 LYS B 297 VAL B 304 1 O ALA B 302 N ALA B 8 SHEET 4 AA8 8 ASN B 80 TYR B 86 1 N PHE B 84 O ILE B 301 SHEET 5 AA8 8 ILE B 223 ASP B 232 1 O VAL B 231 N VAL B 83 SHEET 6 AA8 8 HIS B 207 THR B 218 -1 N VAL B 212 O LEU B 228 SHEET 7 AA8 8 VAL B 127 ILE B 138 -1 N HIS B 132 O TYR B 213 SHEET 8 AA8 8 HIS B 173 VAL B 174 -1 O HIS B 173 N CYS B 133 SHEET 1 AA9 5 VAL B 143 ASP B 145 0 SHEET 2 AA9 5 VAL B 127 ILE B 138 -1 N GLU B 137 O ARG B 144 SHEET 3 AA9 5 HIS B 207 THR B 218 -1 O TYR B 213 N HIS B 132 SHEET 4 AA9 5 ILE B 223 ASP B 232 -1 O LEU B 228 N VAL B 212 SHEET 5 AA9 5 GLU B 335 ASP B 336 -1 O ASP B 336 N ILE B 223 SHEET 1 AB1 3 VAL B 27 THR B 30 0 SHEET 2 AB1 3 GLN B 35 ASN B 39 -1 O ASN B 37 N GLY B 28 SHEET 3 AB1 3 ALA B 45 THR B 49 -1 O PHE B 48 N VAL B 36 SHEET 1 AB2 2 ILE B 157 GLU B 159 0 SHEET 2 AB2 2 VAL B 165 VAL B 167 -1 O TYR B 166 N LYS B 158 SHEET 1 AB3 2 VAL B 194 GLY B 195 0 SHEET 2 AB3 2 SER B 203 SER B 204 -1 O SER B 203 N GLY B 195 LINK OG1 THR A 94 MG MG A 402 1555 1555 2.07 LINK OG SER A 204 MG MG A 402 1555 1555 2.22 LINK O3G ANP A 401 MG MG A 402 1555 1555 2.17 LINK O2B ANP A 401 MG MG A 402 1555 1555 1.95 LINK MG MG A 402 O HOH A 505 1555 1555 2.31 LINK MG MG A 402 O HOH A 511 1555 1555 2.14 LINK OG1 THR B 94 MG MG B 402 1555 1555 2.11 LINK OG SER B 204 MG MG B 402 1555 1555 2.10 LINK O3G ANP B 401 MG MG B 402 1555 1555 2.10 LINK O2B ANP B 401 MG MG B 402 1555 1555 2.06 LINK MG MG B 402 O HOH B 511 1555 1555 2.17 LINK MG MG B 402 O HOH B 523 1555 1555 2.32 CRYST1 100.030 102.200 140.950 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009997 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009785 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007095 0.00000