HEADER DNA BINDING PROTEIN 27-AUG-20 7A79 TITLE CRYSTAL STRUCTURE OF RXR GAMMA LBD IN COMPLEXES WITH PALMITIC ACID AND TITLE 2 GRIP-1 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RETINOIC ACID RECEPTOR RXR-GAMMA; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NUCLEAR RECEPTOR SUBFAMILY 2 GROUP B MEMBER 3,RETINOID X COMPND 5 RECEPTOR GAMMA; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NUCLEAR RECEPTOR COACTIVATOR 2; COMPND 9 CHAIN: C, D; COMPND 10 SYNONYM: NCOA-2,CLASS E BASIC HELIX-LOOP-HELIX PROTEIN 75,BHLHE75, COMPND 11 TRANSCRIPTIONAL INTERMEDIARY FACTOR 2,HTIF2; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RXRG, NR2B3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606 KEYWDS RXRG, STEROID HORMONE RECEPTOR, INHIBITOR, LIPID BINDING, FATTY ACID, KEYWDS 2 STRUCTURAL GENOMICS CONSORTIUM, SGC, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.CHAIKUAD,D.MERK,S.KNAPP,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 3 31-JAN-24 7A79 1 REMARK REVDAT 2 16-DEC-20 7A79 1 JRNL REVDAT 1 21-OCT-20 7A79 0 JRNL AUTH A.CHAIKUAD,J.POLLINGER,M.RUHL,X.NI,W.KILU,J.HEERING,D.MERK JRNL TITL COMPREHENSIVE SET OF TERTIARY COMPLEX STRUCTURES AND JRNL TITL 2 PALMITIC ACID BINDING PROVIDE MOLECULAR INSIGHTS INTO LIGAND JRNL TITL 3 DESIGN FOR RXR ISOFORMS. JRNL REF INT J MOL SCI V. 21 2020 JRNL REFN ESSN 1422-0067 JRNL PMID 33187070 JRNL DOI 10.3390/IJMS21228457 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 28610 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1574 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2084 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.2480 REMARK 3 BIN FREE R VALUE SET COUNT : 102 REMARK 3 BIN FREE R VALUE : 0.3010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3612 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 182 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.44000 REMARK 3 B22 (A**2) : 0.71000 REMARK 3 B33 (A**2) : -0.27000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.219 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.190 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.143 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.817 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3730 ; 0.014 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3636 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5035 ; 1.351 ; 1.636 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8439 ; 1.336 ; 1.573 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 458 ; 6.173 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 181 ;32.494 ;22.044 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 679 ;13.850 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;21.959 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 490 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4034 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 738 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 2 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 231 459 B 231 459 6954 0.080 0.050 REMARK 3 2 C 471 483 D 471 483 329 0.100 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 231 A 459 REMARK 3 ORIGIN FOR THE GROUP (A): 6.9560 -7.5012 15.3534 REMARK 3 T TENSOR REMARK 3 T11: 0.1016 T22: 0.0019 REMARK 3 T33: 0.1102 T12: -0.0017 REMARK 3 T13: 0.0138 T23: 0.0080 REMARK 3 L TENSOR REMARK 3 L11: 1.2022 L22: 0.6897 REMARK 3 L33: 0.9365 L12: -0.2176 REMARK 3 L13: -0.0609 L23: -0.1239 REMARK 3 S TENSOR REMARK 3 S11: -0.0164 S12: -0.0342 S13: -0.1539 REMARK 3 S21: 0.0189 S22: 0.0054 S23: 0.0828 REMARK 3 S31: 0.0637 S32: -0.0228 S33: 0.0110 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 231 B 459 REMARK 3 ORIGIN FOR THE GROUP (A): 24.2841 11.4873 12.4990 REMARK 3 T TENSOR REMARK 3 T11: 0.0713 T22: 0.0389 REMARK 3 T33: 0.0987 T12: -0.0227 REMARK 3 T13: 0.0077 T23: -0.0086 REMARK 3 L TENSOR REMARK 3 L11: 0.8106 L22: 0.7266 REMARK 3 L33: 1.0609 L12: -0.3447 REMARK 3 L13: -0.3013 L23: 0.0858 REMARK 3 S TENSOR REMARK 3 S11: 0.0045 S12: -0.0321 S13: 0.0770 REMARK 3 S21: -0.0288 S22: 0.0236 S23: -0.0822 REMARK 3 S31: -0.0294 S32: 0.0695 S33: -0.0281 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 471 C 483 REMARK 3 ORIGIN FOR THE GROUP (A): -4.3093 -8.3987 31.9780 REMARK 3 T TENSOR REMARK 3 T11: 0.0923 T22: 0.0409 REMARK 3 T33: 0.1125 T12: -0.0222 REMARK 3 T13: 0.0274 T23: 0.0454 REMARK 3 L TENSOR REMARK 3 L11: 3.7727 L22: 5.9288 REMARK 3 L33: 5.8701 L12: -0.5166 REMARK 3 L13: -2.2724 L23: 1.3099 REMARK 3 S TENSOR REMARK 3 S11: -0.0707 S12: 0.0557 S13: 0.0083 REMARK 3 S21: 0.0712 S22: -0.0081 S23: -0.1353 REMARK 3 S31: 0.1492 S32: -0.0752 S33: 0.0788 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 471 D 483 REMARK 3 ORIGIN FOR THE GROUP (A): 24.1426 22.3589 -4.3334 REMARK 3 T TENSOR REMARK 3 T11: 0.1074 T22: 0.0487 REMARK 3 T33: 0.1049 T12: -0.0049 REMARK 3 T13: 0.0394 T23: -0.0010 REMARK 3 L TENSOR REMARK 3 L11: 5.1599 L22: 6.7296 REMARK 3 L33: 3.8324 L12: 3.3725 REMARK 3 L13: 0.9900 L23: 0.1454 REMARK 3 S TENSOR REMARK 3 S11: -0.1540 S12: 0.3814 S13: -0.2176 REMARK 3 S21: 0.1061 S22: 0.0471 S23: 0.1349 REMARK 3 S31: -0.0112 S32: 0.0993 S33: 0.1069 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 7A79 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1292110980. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUL-20 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30235 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 46.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.500 REMARK 200 R MERGE (I) : 0.14800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.90 REMARK 200 R MERGE FOR SHELL (I) : 0.78200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6SJM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17% PEG 3350, 0.1M POTASSIUM CITRATE, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.62300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.35000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.52550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.35000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.62300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.52550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 248 REMARK 465 LYS A 249 REMARK 465 THR A 250 REMARK 465 GLU A 251 REMARK 465 SER A 252 REMARK 465 TYR A 253 REMARK 465 GLY A 254 REMARK 465 ASP A 255 REMARK 465 MET A 256 REMARK 465 ASN A 257 REMARK 465 MET A 258 REMARK 465 GLU A 259 REMARK 465 ASN A 260 REMARK 465 SER A 261 REMARK 465 LEU A 460 REMARK 465 GLN A 461 REMARK 465 ILE A 462 REMARK 465 THR A 463 REMARK 465 THR B 250 REMARK 465 GLU B 251 REMARK 465 SER B 252 REMARK 465 TYR B 253 REMARK 465 GLY B 254 REMARK 465 ASP B 255 REMARK 465 MET B 256 REMARK 465 ASN B 257 REMARK 465 MET B 258 REMARK 465 GLU B 259 REMARK 465 ASN B 260 REMARK 465 SER B 261 REMARK 465 LEU B 460 REMARK 465 GLN B 461 REMARK 465 ILE B 462 REMARK 465 THR B 463 REMARK 465 TYR C 484 REMARK 465 TYR D 484 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 262 OG1 CG2 REMARK 470 LYS B 249 CG CD CE NZ REMARK 470 LYS C 471 CG CD CE NZ REMARK 470 SER C 483 OG REMARK 470 LYS D 471 CG CD CE NZ REMARK 470 SER D 483 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2 PLM A 501 O HOH A 601 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 402 CD GLU B 402 OE1 -0.102 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 289 -10.99 81.42 REMARK 500 LEU A 354 -68.96 -122.09 REMARK 500 GLN A 412 77.25 -113.17 REMARK 500 HIS B 289 -13.80 81.20 REMARK 500 LEU B 354 -67.97 -121.39 REMARK 500 GLN B 412 75.88 -112.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PLM A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PLM B 501 DBREF 7A79 A 233 463 UNP P48443 RXRG_HUMAN 233 463 DBREF 7A79 B 233 463 UNP P48443 RXRG_HUMAN 233 463 DBREF 7A79 C 471 484 UNP Q15596 NCOA2_HUMAN 686 699 DBREF 7A79 D 471 484 UNP Q15596 NCOA2_HUMAN 686 699 SEQADV 7A79 SER A 231 UNP P48443 EXPRESSION TAG SEQADV 7A79 MET A 232 UNP P48443 EXPRESSION TAG SEQADV 7A79 SER B 231 UNP P48443 EXPRESSION TAG SEQADV 7A79 MET B 232 UNP P48443 EXPRESSION TAG SEQADV 7A79 TYR C 484 UNP Q15596 SER 699 CONFLICT SEQADV 7A79 TYR D 484 UNP Q15596 SER 699 CONFLICT SEQRES 1 A 233 SER MET ASP MET PRO VAL GLU ARG ILE LEU GLU ALA GLU SEQRES 2 A 233 LEU ALA VAL GLU PRO LYS THR GLU SER TYR GLY ASP MET SEQRES 3 A 233 ASN MET GLU ASN SER THR ASN ASP PRO VAL THR ASN ILE SEQRES 4 A 233 CYS HIS ALA ALA ASP LYS GLN LEU PHE THR LEU VAL GLU SEQRES 5 A 233 TRP ALA LYS ARG ILE PRO HIS PHE SER ASP LEU THR LEU SEQRES 6 A 233 GLU ASP GLN VAL ILE LEU LEU ARG ALA GLY TRP ASN GLU SEQRES 7 A 233 LEU LEU ILE ALA SER PHE SER HIS ARG SER VAL SER VAL SEQRES 8 A 233 GLN ASP GLY ILE LEU LEU ALA THR GLY LEU HIS VAL HIS SEQRES 9 A 233 ARG SER SER ALA HIS SER ALA GLY VAL GLY SER ILE PHE SEQRES 10 A 233 ASP ARG VAL LEU THR GLU LEU VAL SER LYS MET LYS ASP SEQRES 11 A 233 MET GLN MET ASP LYS SER GLU LEU GLY CYS LEU ARG ALA SEQRES 12 A 233 ILE VAL LEU PHE ASN PRO ASP ALA LYS GLY LEU SER ASN SEQRES 13 A 233 PRO SER GLU VAL GLU THR LEU ARG GLU LYS VAL TYR ALA SEQRES 14 A 233 THR LEU GLU ALA TYR THR LYS GLN LYS TYR PRO GLU GLN SEQRES 15 A 233 PRO GLY ARG PHE ALA LYS LEU LEU LEU ARG LEU PRO ALA SEQRES 16 A 233 LEU ARG SER ILE GLY LEU LYS CYS LEU GLU HIS LEU PHE SEQRES 17 A 233 PHE PHE LYS LEU ILE GLY ASP THR PRO ILE ASP THR PHE SEQRES 18 A 233 LEU MET GLU MET LEU GLU THR PRO LEU GLN ILE THR SEQRES 1 B 233 SER MET ASP MET PRO VAL GLU ARG ILE LEU GLU ALA GLU SEQRES 2 B 233 LEU ALA VAL GLU PRO LYS THR GLU SER TYR GLY ASP MET SEQRES 3 B 233 ASN MET GLU ASN SER THR ASN ASP PRO VAL THR ASN ILE SEQRES 4 B 233 CYS HIS ALA ALA ASP LYS GLN LEU PHE THR LEU VAL GLU SEQRES 5 B 233 TRP ALA LYS ARG ILE PRO HIS PHE SER ASP LEU THR LEU SEQRES 6 B 233 GLU ASP GLN VAL ILE LEU LEU ARG ALA GLY TRP ASN GLU SEQRES 7 B 233 LEU LEU ILE ALA SER PHE SER HIS ARG SER VAL SER VAL SEQRES 8 B 233 GLN ASP GLY ILE LEU LEU ALA THR GLY LEU HIS VAL HIS SEQRES 9 B 233 ARG SER SER ALA HIS SER ALA GLY VAL GLY SER ILE PHE SEQRES 10 B 233 ASP ARG VAL LEU THR GLU LEU VAL SER LYS MET LYS ASP SEQRES 11 B 233 MET GLN MET ASP LYS SER GLU LEU GLY CYS LEU ARG ALA SEQRES 12 B 233 ILE VAL LEU PHE ASN PRO ASP ALA LYS GLY LEU SER ASN SEQRES 13 B 233 PRO SER GLU VAL GLU THR LEU ARG GLU LYS VAL TYR ALA SEQRES 14 B 233 THR LEU GLU ALA TYR THR LYS GLN LYS TYR PRO GLU GLN SEQRES 15 B 233 PRO GLY ARG PHE ALA LYS LEU LEU LEU ARG LEU PRO ALA SEQRES 16 B 233 LEU ARG SER ILE GLY LEU LYS CYS LEU GLU HIS LEU PHE SEQRES 17 B 233 PHE PHE LYS LEU ILE GLY ASP THR PRO ILE ASP THR PHE SEQRES 18 B 233 LEU MET GLU MET LEU GLU THR PRO LEU GLN ILE THR SEQRES 1 C 14 LYS HIS LYS ILE LEU HIS ARG LEU LEU GLN ASP SER SER SEQRES 2 C 14 TYR SEQRES 1 D 14 LYS HIS LYS ILE LEU HIS ARG LEU LEU GLN ASP SER SER SEQRES 2 D 14 TYR HET PLM A 501 18 HET PLM B 501 18 HETNAM PLM PALMITIC ACID FORMUL 5 PLM 2(C16 H32 O2) FORMUL 7 HOH *182(H2 O) HELIX 1 AA1 PRO A 235 VAL A 246 1 12 HELIX 2 AA2 ASP A 264 ILE A 287 1 24 HELIX 3 AA3 HIS A 289 LEU A 293 5 5 HELIX 4 AA4 THR A 294 SER A 318 1 25 HELIX 5 AA5 VAL A 319 VAL A 321 5 3 HELIX 6 AA6 ARG A 335 ALA A 341 1 7 HELIX 7 AA7 VAL A 343 LEU A 354 1 12 HELIX 8 AA8 LEU A 354 GLN A 362 1 9 HELIX 9 AA9 ASP A 364 PHE A 377 1 14 HELIX 10 AB1 ASN A 386 TYR A 409 1 24 HELIX 11 AB2 GLY A 414 LEU A 421 1 8 HELIX 12 AB3 ARG A 422 GLY A 444 1 23 HELIX 13 AB4 ASP A 449 GLU A 457 1 9 HELIX 14 AB5 PRO B 235 VAL B 246 1 12 HELIX 15 AB6 ASP B 264 ILE B 287 1 24 HELIX 16 AB7 HIS B 289 LEU B 293 5 5 HELIX 17 AB8 THR B 294 SER B 318 1 25 HELIX 18 AB9 ARG B 335 ALA B 341 1 7 HELIX 19 AC1 VAL B 343 LEU B 354 1 12 HELIX 20 AC2 LEU B 354 GLN B 362 1 9 HELIX 21 AC3 ASP B 364 PHE B 377 1 14 HELIX 22 AC4 ASN B 386 TYR B 409 1 24 HELIX 23 AC5 GLY B 414 LEU B 421 1 8 HELIX 24 AC6 ARG B 422 GLY B 444 1 23 HELIX 25 AC7 ASP B 449 GLU B 457 1 9 HELIX 26 AC8 HIS C 472 ASP C 481 1 10 HELIX 27 AC9 HIS D 472 ASP D 481 1 10 SHEET 1 AA1 2 GLY A 324 LEU A 326 0 SHEET 2 AA1 2 HIS A 332 HIS A 334 -1 O VAL A 333 N ILE A 325 SHEET 1 AA2 2 GLY B 324 LEU B 326 0 SHEET 2 AA2 2 HIS B 332 HIS B 334 -1 O VAL B 333 N ILE B 325 SITE 1 AC1 11 ILE A 269 ALA A 273 GLN A 276 ASN A 307 SITE 2 AC1 11 PHE A 314 ARG A 317 LEU A 327 ALA A 328 SITE 3 AC1 11 ILE A 346 LEU A 437 HOH A 601 SITE 1 AC2 11 ALA B 272 ALA B 273 GLN B 276 PHE B 314 SITE 2 AC2 11 ARG B 317 LEU B 327 ALA B 328 CYS B 433 SITE 3 AC2 11 LEU B 437 PHE B 440 HOH B 601 CRYST1 63.246 67.051 110.700 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015811 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014914 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009033 0.00000