HEADER LIGASE 28-AUG-20 7A7E TITLE STRUCTURE OF A DELTA-N MUTANT - E232START - OF PA1120 (TPBB OR YFIN) TITLE 2 FROM PSEUDOMONAS AERUGINOSA (PAO1) COMPRISING ONLY THE GGDEF DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIGUANYLATE CYCLASE TPBB; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: DELTAN MUTANT (E232START) MISSING THE FIRST 232 N- COMPND 6 TERMINAL RESIDUES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA PAO1; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 GENE: TPBB, PA1120; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS C-DI-GMP, GTP, DIGUANYLATE CYCLASE, BIOFILM, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR G.GIARDINA,S.RINALDO,F.MANTONI,P.BRUNOTTI REVDAT 2 31-JAN-24 7A7E 1 REMARK REVDAT 1 07-JUL-21 7A7E 0 JRNL AUTH F.MANTONI,C.SCRIBANI ROSSI,A.PAIARDINI,A.DI MATTEO, JRNL AUTH 2 L.CAPPELLACCI,R.PETRELLI,M.RICCIUTELLI,A.PAONE,F.CUTRUZZOLA, JRNL AUTH 3 G.GIARDINA,S.RINALDO JRNL TITL STUDYING GGDEF DOMAIN IN THE ACT: MINIMIZE CONFORMATIONAL JRNL TITL 2 FRUSTRATION TO PREVENT ARTEFACTS. JRNL REF LIFE V. 11 2021 JRNL REFN ESSN 2075-1729 JRNL PMID 33418960 JRNL DOI 10.3390/LIFE11010031 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 19705 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2195 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1427 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3970 REMARK 3 BIN FREE R VALUE SET COUNT : 177 REMARK 3 BIN FREE R VALUE : 0.4230 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3799 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 7 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 64.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.53000 REMARK 3 B22 (A**2) : 10.18000 REMARK 3 B33 (A**2) : -6.65000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.587 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.285 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3850 ; 0.007 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5235 ; 1.520 ; 1.619 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 517 ; 6.406 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 194 ;30.462 ;21.340 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 590 ;19.339 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;18.292 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 544 ; 0.111 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2949 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7A7E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1292110455. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91801 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.2.7 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21951 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 49.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.20 REMARK 200 R MERGE (I) : 0.25500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.50 REMARK 200 R MERGE FOR SHELL (I) : 1.70300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 11.2.05 REMARK 200 STARTING MODEL: 4IOB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN CONCENTRATION: 2.5 MG/ML REMARK 280 PROTEIN BUFFER: BUFFER 250MM NACL 10MM TRIS PH 8 2% GLY, 5MM REMARK 280 MGCL2 PRECIPITANT: 0.2 M AMMONIO ACETATE, 0.1M TRI SODIUM REMARK 280 CITRATE PH 5.5, 30% W/V PEG 4K CRYO: +20% GLY, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.82100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.48750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.55200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.48750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.82100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.55200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 230 REMARK 465 SER A 231 REMARK 465 HIS A 232 REMARK 465 SER A 233 REMARK 465 TRP A 234 REMARK 465 GLN A 235 REMARK 465 ALA A 236 REMARK 465 ARG A 237 REMARK 465 LEU A 238 REMARK 465 GLN A 239 REMARK 465 ASP A 240 REMARK 465 GLU A 241 REMARK 465 ASN A 242 REMARK 465 ALA A 243 REMARK 465 SER A 244 REMARK 465 LEU A 245 REMARK 465 ALA A 246 REMARK 465 HIS A 247 REMARK 465 GLN A 248 REMARK 465 ALA A 249 REMARK 465 GLU A 422 REMARK 465 LYS A 423 REMARK 465 GLU A 424 REMARK 465 ILE A 425 REMARK 465 ASP A 426 REMARK 465 SER A 427 REMARK 465 ALA A 428 REMARK 465 THR A 429 REMARK 465 PRO A 430 REMARK 465 GLU A 431 REMARK 465 ALA A 432 REMARK 465 PRO A 433 REMARK 465 PRO A 434 REMARK 465 LYS A 435 REMARK 465 GLY B 230 REMARK 465 SER B 231 REMARK 465 HIS B 232 REMARK 465 SER B 233 REMARK 465 TRP B 234 REMARK 465 GLN B 235 REMARK 465 ALA B 236 REMARK 465 ARG B 237 REMARK 465 LEU B 238 REMARK 465 GLN B 239 REMARK 465 ASP B 240 REMARK 465 GLU B 241 REMARK 465 ASN B 242 REMARK 465 ALA B 243 REMARK 465 SER B 244 REMARK 465 GLU B 421 REMARK 465 GLU B 422 REMARK 465 LYS B 423 REMARK 465 GLU B 424 REMARK 465 ILE B 425 REMARK 465 ASP B 426 REMARK 465 SER B 427 REMARK 465 ALA B 428 REMARK 465 THR B 429 REMARK 465 PRO B 430 REMARK 465 GLU B 431 REMARK 465 ALA B 432 REMARK 465 PRO B 433 REMARK 465 PRO B 434 REMARK 465 LYS B 435 REMARK 465 GLY C 230 REMARK 465 SER C 231 REMARK 465 HIS C 232 REMARK 465 SER C 233 REMARK 465 TRP C 234 REMARK 465 GLN C 235 REMARK 465 ALA C 236 REMARK 465 ARG C 237 REMARK 465 LEU C 238 REMARK 465 GLN C 239 REMARK 465 ASP C 240 REMARK 465 GLU C 241 REMARK 465 ASN C 242 REMARK 465 ALA C 243 REMARK 465 SER C 244 REMARK 465 LEU C 245 REMARK 465 ALA C 246 REMARK 465 HIS C 247 REMARK 465 GLN C 248 REMARK 465 ALA C 249 REMARK 465 GLU C 422 REMARK 465 LYS C 423 REMARK 465 GLU C 424 REMARK 465 ILE C 425 REMARK 465 ASP C 426 REMARK 465 SER C 427 REMARK 465 ALA C 428 REMARK 465 THR C 429 REMARK 465 PRO C 430 REMARK 465 GLU C 431 REMARK 465 ALA C 432 REMARK 465 PRO C 433 REMARK 465 PRO C 434 REMARK 465 LYS C 435 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 250 CG ND1 CD2 CE1 NE2 REMARK 470 HIS A 251 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 290 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 292 CG CD CE NZ REMARK 470 GLU A 293 CG CD OE1 OE2 REMARK 470 ARG A 297 CD NE CZ NH1 NH2 REMARK 470 GLN A 357 CG CD OE1 NE2 REMARK 470 ARG A 361 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 405 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 421 CG CD OE1 OE2 REMARK 470 ARG B 269 NE CZ NH1 NH2 REMARK 470 ARG B 272 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 276 CG CD OE1 OE2 REMARK 470 ARG B 278 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 290 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 292 CG CD CE NZ REMARK 470 GLU B 293 CD OE1 OE2 REMARK 470 ARG B 297 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 320 CG CD OE1 OE2 REMARK 470 GLN B 357 CG CD OE1 NE2 REMARK 470 ARG B 361 CD NE CZ NH1 NH2 REMARK 470 ARG B 402 CD NE CZ NH1 NH2 REMARK 470 ARG B 405 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 414 CG OD1 ND2 REMARK 470 ARG B 417 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 420 CG CD OE1 NE2 REMARK 470 HIS C 250 CG ND1 CD2 CE1 NE2 REMARK 470 GLU C 276 CG CD OE1 OE2 REMARK 470 HIS C 277 CG ND1 CD2 CE1 NE2 REMARK 470 ARG C 278 CD NE CZ NH1 NH2 REMARK 470 ARG C 290 CD NE CZ NH1 NH2 REMARK 470 LYS C 292 CG CD CE NZ REMARK 470 GLU C 293 CG CD OE1 OE2 REMARK 470 ARG C 297 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 315 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 320 CG CD OE1 OE2 REMARK 470 ARG C 347 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 361 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 405 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 417 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 421 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 404 119.42 -160.25 REMARK 500 LEU C 298 -19.32 -140.02 REMARK 500 GLN C 403 -65.80 -94.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 288 O REMARK 620 2 ASP A 330 OD2 75.6 REMARK 620 3 HOH A 602 O 122.3 161.5 REMARK 620 4 HOH A 603 O 160.6 111.2 53.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 287 OD2 REMARK 620 2 SER B 288 O 75.4 REMARK 620 3 ASP B 330 OD2 101.3 76.4 REMARK 620 4 HOH B 601 O 84.3 107.4 173.9 REMARK 620 5 HOH B 602 O 143.1 100.2 113.4 61.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER C 288 O REMARK 620 2 ASP C 330 OD2 66.5 REMARK 620 3 HOH C 601 O 123.5 105.4 REMARK 620 4 HOH C 602 O 104.3 169.9 82.8 REMARK 620 N 1 2 3 DBREF 7A7E A 233 435 UNP Q9I4L5 Q9I4L5_PSEAE 233 435 DBREF 7A7E B 233 435 UNP Q9I4L5 Q9I4L5_PSEAE 233 435 DBREF 7A7E C 233 435 UNP Q9I4L5 Q9I4L5_PSEAE 233 435 SEQADV 7A7E GLY A 230 UNP Q9I4L5 EXPRESSION TAG SEQADV 7A7E SER A 231 UNP Q9I4L5 EXPRESSION TAG SEQADV 7A7E HIS A 232 UNP Q9I4L5 EXPRESSION TAG SEQADV 7A7E GLY B 230 UNP Q9I4L5 EXPRESSION TAG SEQADV 7A7E SER B 231 UNP Q9I4L5 EXPRESSION TAG SEQADV 7A7E HIS B 232 UNP Q9I4L5 EXPRESSION TAG SEQADV 7A7E GLY C 230 UNP Q9I4L5 EXPRESSION TAG SEQADV 7A7E SER C 231 UNP Q9I4L5 EXPRESSION TAG SEQADV 7A7E HIS C 232 UNP Q9I4L5 EXPRESSION TAG SEQRES 1 A 206 GLY SER HIS SER TRP GLN ALA ARG LEU GLN ASP GLU ASN SEQRES 2 A 206 ALA SER LEU ALA HIS GLN ALA HIS HIS ASP SER LEU THR SEQRES 3 A 206 SER LEU PRO ASN ARG ALA PHE PHE GLU GLY ARG LEU SER SEQRES 4 A 206 ARG ALA LEU ARG ASP ALA ASN GLU HIS ARG GLU GLN LEU SEQRES 5 A 206 ALA VAL LEU PHE ILE ASP SER ASP ARG PHE LYS GLU ILE SEQRES 6 A 206 ASN ASP ARG LEU GLY HIS ALA ALA GLY ASP THR VAL LEU SEQRES 7 A 206 VAL ASN ILE ALA MET ARG ILE ARG GLY GLN LEU ARG GLU SEQRES 8 A 206 SER ASP LEU VAL ALA ARG LEU GLY GLY ASP GLU PHE ALA SEQRES 9 A 206 VAL LEU LEU ALA PRO LEU ALA SER GLY ALA ASP ALA LEU SEQRES 10 A 206 ARG ILE ALA ASP ASN ILE ILE ALA SER MET GLN ALA PRO SEQRES 11 A 206 ILE ARG LEU SER ASP GLY SER THR VAL SER THR SER LEU SEQRES 12 A 206 THR ILE GLY ILE ALA LEU TYR PRO GLU HIS ALA ASP THR SEQRES 13 A 206 PRO ALA ALA LEU LEU HIS ASP ALA ASP MET ALA MET TYR SEQRES 14 A 206 ILE ALA LYS ARG GLN ALA ARG GLY SER ARG ARG LEU ALA SEQRES 15 A 206 GLU LEU ASN ASP PRO ARG ILE LEU GLN GLU GLU LYS GLU SEQRES 16 A 206 ILE ASP SER ALA THR PRO GLU ALA PRO PRO LYS SEQRES 1 B 206 GLY SER HIS SER TRP GLN ALA ARG LEU GLN ASP GLU ASN SEQRES 2 B 206 ALA SER LEU ALA HIS GLN ALA HIS HIS ASP SER LEU THR SEQRES 3 B 206 SER LEU PRO ASN ARG ALA PHE PHE GLU GLY ARG LEU SER SEQRES 4 B 206 ARG ALA LEU ARG ASP ALA ASN GLU HIS ARG GLU GLN LEU SEQRES 5 B 206 ALA VAL LEU PHE ILE ASP SER ASP ARG PHE LYS GLU ILE SEQRES 6 B 206 ASN ASP ARG LEU GLY HIS ALA ALA GLY ASP THR VAL LEU SEQRES 7 B 206 VAL ASN ILE ALA MET ARG ILE ARG GLY GLN LEU ARG GLU SEQRES 8 B 206 SER ASP LEU VAL ALA ARG LEU GLY GLY ASP GLU PHE ALA SEQRES 9 B 206 VAL LEU LEU ALA PRO LEU ALA SER GLY ALA ASP ALA LEU SEQRES 10 B 206 ARG ILE ALA ASP ASN ILE ILE ALA SER MET GLN ALA PRO SEQRES 11 B 206 ILE ARG LEU SER ASP GLY SER THR VAL SER THR SER LEU SEQRES 12 B 206 THR ILE GLY ILE ALA LEU TYR PRO GLU HIS ALA ASP THR SEQRES 13 B 206 PRO ALA ALA LEU LEU HIS ASP ALA ASP MET ALA MET TYR SEQRES 14 B 206 ILE ALA LYS ARG GLN ALA ARG GLY SER ARG ARG LEU ALA SEQRES 15 B 206 GLU LEU ASN ASP PRO ARG ILE LEU GLN GLU GLU LYS GLU SEQRES 16 B 206 ILE ASP SER ALA THR PRO GLU ALA PRO PRO LYS SEQRES 1 C 206 GLY SER HIS SER TRP GLN ALA ARG LEU GLN ASP GLU ASN SEQRES 2 C 206 ALA SER LEU ALA HIS GLN ALA HIS HIS ASP SER LEU THR SEQRES 3 C 206 SER LEU PRO ASN ARG ALA PHE PHE GLU GLY ARG LEU SER SEQRES 4 C 206 ARG ALA LEU ARG ASP ALA ASN GLU HIS ARG GLU GLN LEU SEQRES 5 C 206 ALA VAL LEU PHE ILE ASP SER ASP ARG PHE LYS GLU ILE SEQRES 6 C 206 ASN ASP ARG LEU GLY HIS ALA ALA GLY ASP THR VAL LEU SEQRES 7 C 206 VAL ASN ILE ALA MET ARG ILE ARG GLY GLN LEU ARG GLU SEQRES 8 C 206 SER ASP LEU VAL ALA ARG LEU GLY GLY ASP GLU PHE ALA SEQRES 9 C 206 VAL LEU LEU ALA PRO LEU ALA SER GLY ALA ASP ALA LEU SEQRES 10 C 206 ARG ILE ALA ASP ASN ILE ILE ALA SER MET GLN ALA PRO SEQRES 11 C 206 ILE ARG LEU SER ASP GLY SER THR VAL SER THR SER LEU SEQRES 12 C 206 THR ILE GLY ILE ALA LEU TYR PRO GLU HIS ALA ASP THR SEQRES 13 C 206 PRO ALA ALA LEU LEU HIS ASP ALA ASP MET ALA MET TYR SEQRES 14 C 206 ILE ALA LYS ARG GLN ALA ARG GLY SER ARG ARG LEU ALA SEQRES 15 C 206 GLU LEU ASN ASP PRO ARG ILE LEU GLN GLU GLU LYS GLU SEQRES 16 C 206 ILE ASP SER ALA THR PRO GLU ALA PRO PRO LYS HET MG A 501 1 HET MG B 501 1 HET MG C 501 1 HETNAM MG MAGNESIUM ION FORMUL 4 MG 3(MG 2+) FORMUL 7 HOH *7(H2 O) HELIX 1 AA1 ASN A 259 HIS A 277 1 19 HELIX 2 AA2 ARG A 290 GLY A 316 1 27 HELIX 3 AA3 SER A 341 MET A 356 1 16 HELIX 4 AA4 THR A 385 ALA A 404 1 20 HELIX 5 AA5 ASN A 414 GLU A 421 1 8 HELIX 6 AA6 ASN B 259 ARG B 278 1 20 HELIX 7 AA7 ARG B 290 GLY B 299 1 10 HELIX 8 AA8 GLY B 299 GLY B 316 1 18 HELIX 9 AA9 SER B 341 MET B 356 1 16 HELIX 10 AB1 THR B 385 ALA B 404 1 20 HELIX 11 AB2 ASN B 414 GLN B 420 1 7 HELIX 12 AB3 ASN C 259 HIS C 277 1 19 HELIX 13 AB4 ARG C 290 GLY C 299 1 10 HELIX 14 AB5 GLY C 299 GLY C 316 1 18 HELIX 15 AB6 SER C 341 MET C 356 1 16 HELIX 16 AB7 THR C 385 ALA C 404 1 20 HELIX 17 AB8 ASN C 414 GLU C 421 1 8 SHEET 1 AA1 5 LEU A 323 GLY A 328 0 SHEET 2 AA1 5 GLU A 331 LEU A 339 -1 O ALA A 333 N ALA A 325 SHEET 3 AA1 5 GLN A 280 SER A 288 -1 N ILE A 286 O PHE A 332 SHEET 4 AA1 5 LEU A 372 TYR A 379 -1 O GLY A 375 N PHE A 285 SHEET 5 AA1 5 ARG A 408 LEU A 410 1 O ARG A 409 N ILE A 376 SHEET 1 AA2 2 ILE A 360 ARG A 361 0 SHEET 2 AA2 2 THR A 367 VAL A 368 -1 O VAL A 368 N ILE A 360 SHEET 1 AA3 5 LEU B 323 GLY B 328 0 SHEET 2 AA3 5 GLU B 331 LEU B 339 -1 O ALA B 333 N ALA B 325 SHEET 3 AA3 5 GLN B 280 SER B 288 -1 N ILE B 286 O PHE B 332 SHEET 4 AA3 5 LEU B 372 TYR B 379 -1 O THR B 373 N ASP B 287 SHEET 5 AA3 5 ARG B 408 LEU B 410 1 O ARG B 409 N ILE B 376 SHEET 1 AA4 2 ILE B 360 ARG B 361 0 SHEET 2 AA4 2 THR B 367 VAL B 368 -1 O VAL B 368 N ILE B 360 SHEET 1 AA5 5 LEU C 323 GLY C 328 0 SHEET 2 AA5 5 GLU C 331 LEU C 339 -1 O GLU C 331 N GLY C 328 SHEET 3 AA5 5 GLN C 280 SER C 288 -1 N ALA C 282 O LEU C 336 SHEET 4 AA5 5 LEU C 372 TYR C 379 -1 O ALA C 377 N VAL C 283 SHEET 5 AA5 5 ARG C 408 LEU C 410 1 O ARG C 409 N ILE C 376 SHEET 1 AA6 2 ILE C 360 ARG C 361 0 SHEET 2 AA6 2 THR C 367 VAL C 368 -1 O VAL C 368 N ILE C 360 LINK O SER A 288 MG MG A 501 1555 1555 2.41 LINK OD2 ASP A 330 MG MG A 501 1555 1555 2.26 LINK MG MG A 501 O HOH A 602 1555 1555 2.94 LINK MG MG A 501 O HOH A 603 1555 1555 2.98 LINK OD2 ASP B 287 MG MG B 501 1555 1555 2.88 LINK O SER B 288 MG MG B 501 1555 1555 2.66 LINK OD2 ASP B 330 MG MG B 501 1555 1555 1.85 LINK MG MG B 501 O HOH B 601 1555 1555 2.66 LINK MG MG B 501 O HOH B 602 1555 1555 2.66 LINK O SER C 288 MG MG C 501 1555 1555 2.94 LINK OD2 ASP C 330 MG MG C 501 1555 1555 2.57 LINK MG MG C 501 O HOH C 601 1555 1555 2.53 LINK MG MG C 501 O HOH C 602 1555 1555 2.45 CISPEP 1 ALA A 337 PRO A 338 0 -14.91 CISPEP 2 TYR A 379 PRO A 380 0 -2.71 CISPEP 3 ALA B 337 PRO B 338 0 -5.52 CISPEP 4 TYR B 379 PRO B 380 0 2.87 CISPEP 5 ALA C 337 PRO C 338 0 -7.77 CISPEP 6 TYR C 379 PRO C 380 0 5.22 CRYST1 79.642 85.104 126.975 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012556 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011750 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007876 0.00000