HEADER ANTIFUNGAL PROTEIN 31-AUG-20 7A8X TITLE COMPLEX OF RICE BLAST (MAGNAPORTHE ORYZAE) EFFECTOR PROTEIN AVR-PIKC TITLE 2 WITH THE HMA DOMAIN OF PIKH-1 FROM RICE (ORYZA SATIVA) COMPND MOL_ID: 1; COMPND 2 MOLECULE: NBS-LRR CLASS DISEASE RESISTANCE PROTEIN; COMPND 3 CHAIN: A, B, D, E; COMPND 4 SYNONYM: NBS-LRR CLASS DISEASE RESISTANCE PROTEIN PIKH-1; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: AVR-PIK PROTEIN; COMPND 8 CHAIN: C, F; COMPND 9 SYNONYM: AVR-PIK PROTEIN ( PIKMPROTEIN,PIKP PROTEIN ),AVRPI7 PROTEIN; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYZA SATIVA SUBSP. JAPONICA; SOURCE 3 ORGANISM_COMMON: RICE; SOURCE 4 ORGANISM_TAXID: 39947; SOURCE 5 GENE: PI-KM1, PIKH-1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MAGNAPORTHE ORYZAE (STRAIN 70-15 / ATCC MYA- SOURCE 10 4617 / FGSC 8958); SOURCE 11 ORGANISM_COMMON: RICE BLAST FUNGUS; SOURCE 12 ORGANISM_TAXID: 242507; SOURCE 13 STRAIN: 70-15 / ATCC MYA-4617 / FGSC 8958; SOURCE 14 GENE: MGG_15972; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FUNGAL EFFECTOR, HMA DOMAIN, NLR PROTEIN, MAX EFFECTOR, ANTIFUNGAL KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.H.R.MAIDMENT,G.XIAO,M.FRANCESCHETTI,M.J.BANFIELD REVDAT 3 31-JAN-24 7A8X 1 JRNL REVDAT 2 17-MAR-21 7A8X 1 JRNL REVDAT 1 03-FEB-21 7A8X 0 JRNL AUTH J.C.DE LA CONCEPCION,J.H.R.MAIDMENT,A.LONGYA,G.XIAO, JRNL AUTH 2 M.FRANCESCHETTI,M.J.BANFIELD JRNL TITL THE ALLELIC RICE IMMUNE RECEPTOR PIKH CONFERS EXTENDED JRNL TITL 2 RESISTANCE TO STRAINS OF THE BLAST FUNGUS THROUGH A SINGLE JRNL TITL 3 POLYMORPHISM IN THE EFFECTOR BINDING INTERFACE. JRNL REF PLOS PATHOG. V. 17 09368 2021 JRNL REFN ESSN 1553-7374 JRNL PMID 33647072 JRNL DOI 10.1371/JOURNAL.PPAT.1009368 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.C.DE LA CONCEPCION,J.H.R.MAIDMENT,A.LONGYA,G.XIAO, REMARK 1 AUTH 2 M.FRANCESCHETTI,M.J.BANFIELD REMARK 1 TITL THE ALLELIC RICE IMMUNE RECEPTOR PIKH CONFERS EXTENDED REMARK 1 TITL 2 RESISTANCE TO STRAINS OF THE BLAST FUNGUS THROUGH A SINGLE REMARK 1 TITL 3 POLYMORPHISM IN THE EFFECTOR BINDING INTERFACE REMARK 1 REF BIORXIV 2020 REMARK 1 REFN ISSN 2692-8205 REMARK 1 DOI 10.1101/2020.09.05.284240 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 65.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 25793 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.994 REMARK 3 FREE R VALUE TEST SET COUNT : 1288 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1861 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2660 REMARK 3 BIN FREE R VALUE SET COUNT : 89 REMARK 3 BIN FREE R VALUE : 0.3110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3459 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 116 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.99600 REMARK 3 B22 (A**2) : -0.90900 REMARK 3 B33 (A**2) : 1.90500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.295 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.232 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.170 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.014 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3515 ; 0.008 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3570 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4725 ; 1.488 ; 1.629 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8239 ; 1.180 ; 1.600 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 446 ; 7.807 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 154 ;33.760 ;22.922 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 670 ;16.562 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;16.141 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 450 ; 0.059 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3878 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 730 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 522 ; 0.198 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 31 ; 0.193 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1641 ; 0.150 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 135 ; 0.132 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1805 ; 1.825 ; 4.261 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1804 ; 1.825 ; 4.260 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2241 ; 2.702 ; 6.376 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2242 ; 2.702 ; 6.377 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1710 ; 2.023 ; 4.484 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1710 ; 2.018 ; 4.484 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2483 ; 3.118 ; 6.622 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2483 ; 3.115 ; 6.622 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 188 A 259 REMARK 3 ORIGIN FOR THE GROUP (A): 4.4025 -12.7317 -23.6864 REMARK 3 T TENSOR REMARK 3 T11: 0.1169 T22: 0.2443 REMARK 3 T33: 0.1410 T12: 0.0139 REMARK 3 T13: -0.1005 T23: -0.0083 REMARK 3 L TENSOR REMARK 3 L11: 5.1410 L22: 6.6791 REMARK 3 L33: 4.8631 L12: -1.7996 REMARK 3 L13: 0.6559 L23: 0.5151 REMARK 3 S TENSOR REMARK 3 S11: 0.2072 S12: -0.2003 S13: -0.3773 REMARK 3 S21: -0.0322 S22: 0.0003 S23: 0.6017 REMARK 3 S31: 0.4389 S32: -0.1781 S33: -0.2075 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 186 B 262 REMARK 3 ORIGIN FOR THE GROUP (A): 20.3948 -8.3142 -14.2066 REMARK 3 T TENSOR REMARK 3 T11: 0.0251 T22: 0.0301 REMARK 3 T33: 0.0150 T12: -0.0040 REMARK 3 T13: 0.0080 T23: 0.0123 REMARK 3 L TENSOR REMARK 3 L11: 6.2734 L22: 3.9794 REMARK 3 L33: 4.0746 L12: -1.0025 REMARK 3 L13: 0.9012 L23: -0.6602 REMARK 3 S TENSOR REMARK 3 S11: 0.0715 S12: 0.1767 S13: 0.1575 REMARK 3 S21: -0.1424 S22: -0.0162 S23: -0.1553 REMARK 3 S31: 0.0615 S32: 0.0443 S33: -0.0553 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 33 C 112 REMARK 3 ORIGIN FOR THE GROUP (A): 25.9438 8.1959 -16.8355 REMARK 3 T TENSOR REMARK 3 T11: 0.2471 T22: 0.0742 REMARK 3 T33: 0.2814 T12: -0.0048 REMARK 3 T13: -0.0380 T23: 0.1083 REMARK 3 L TENSOR REMARK 3 L11: 6.9531 L22: 2.4157 REMARK 3 L33: 1.7008 L12: -0.2891 REMARK 3 L13: 1.7640 L23: 0.6222 REMARK 3 S TENSOR REMARK 3 S11: -0.1874 S12: 0.4960 S13: 0.9339 REMARK 3 S21: -0.3345 S22: -0.0049 S23: 0.1492 REMARK 3 S31: -0.4056 S32: 0.0129 S33: 0.1923 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 187 D 259 REMARK 3 ORIGIN FOR THE GROUP (A): -27.3071 11.1193 10.7413 REMARK 3 T TENSOR REMARK 3 T11: 0.0721 T22: 0.0772 REMARK 3 T33: 0.1791 T12: 0.0004 REMARK 3 T13: 0.0649 T23: -0.0262 REMARK 3 L TENSOR REMARK 3 L11: 6.2088 L22: 6.0420 REMARK 3 L33: 5.1341 L12: -0.4923 REMARK 3 L13: -1.0273 L23: 0.1280 REMARK 3 S TENSOR REMARK 3 S11: 0.0706 S12: 0.3079 S13: 0.2059 REMARK 3 S21: -0.1585 S22: 0.0779 S23: 0.5004 REMARK 3 S31: -0.3092 S32: -0.4588 S33: -0.1485 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 186 E 262 REMARK 3 ORIGIN FOR THE GROUP (A): -11.9202 5.6600 0.8292 REMARK 3 T TENSOR REMARK 3 T11: 0.0428 T22: 0.0290 REMARK 3 T33: 0.1079 T12: -0.0117 REMARK 3 T13: 0.0532 T23: 0.0109 REMARK 3 L TENSOR REMARK 3 L11: 4.8929 L22: 4.5063 REMARK 3 L33: 5.6903 L12: -0.4935 REMARK 3 L13: 0.0380 L23: 0.8956 REMARK 3 S TENSOR REMARK 3 S11: 0.0681 S12: 0.0490 S13: 0.3392 REMARK 3 S21: -0.0345 S22: 0.0215 S23: -0.2504 REMARK 3 S31: -0.2882 S32: 0.3866 S33: -0.0896 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 32 F 113 REMARK 3 ORIGIN FOR THE GROUP (A): -6.8221 -10.8226 3.7802 REMARK 3 T TENSOR REMARK 3 T11: 0.0328 T22: 0.0159 REMARK 3 T33: 0.0138 T12: -0.0110 REMARK 3 T13: 0.0127 T23: -0.0038 REMARK 3 L TENSOR REMARK 3 L11: 3.5919 L22: 2.4763 REMARK 3 L33: 2.3228 L12: -0.2656 REMARK 3 L13: -0.3545 L23: -0.1660 REMARK 3 S TENSOR REMARK 3 S11: 0.1842 S12: -0.1161 S13: -0.0103 REMARK 3 S21: 0.1155 S22: -0.1509 S23: 0.0554 REMARK 3 S31: 0.0801 S32: 0.0886 S33: -0.0333 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 7A8X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-SEP-20. REMARK 100 THE DEPOSITION ID IS D_1292110665. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAY-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : M REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AIMLESS 0.7.4 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25847 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 107.840 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 13.10 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.00 REMARK 200 R MERGE FOR SHELL (I) : 0.92700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: 7A8W REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.12 M MONOSACCHARIDES (0.2M D REMARK 280 -GLUCOSE; 0.2M D-MANNOSE; 0.2M D-GALACTOSE; 0.2M L-FUCOSE; 0.2M REMARK 280 D-XYLOSE; 0.2M N-ACETYL-D-GLUCOSAMINE); 0.1 M BUFFER SYSTEM 1 (1 REMARK 280 M IMIDAZOLE; MES MONOHYDRATE (ACID)) PH 6.5; 50% V/V PRECIPITANT REMARK 280 MIX 1 (40% V/V PEG 500; MME; 20 % W/V PEG 20000), VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.67550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.92100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.56050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.92100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.67550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.56050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 186 REMARK 465 LEU A 187 REMARK 465 ALA A 260 REMARK 465 LYS A 261 REMARK 465 LYS A 262 REMARK 465 ASP A 263 REMARK 465 GLU B 198 REMARK 465 GLY B 199 REMARK 465 ASN B 200 REMARK 465 ASP B 263 REMARK 465 MET C 21 REMARK 465 GLU C 22 REMARK 465 THR C 23 REMARK 465 GLY C 24 REMARK 465 ASN C 25 REMARK 465 LYS C 26 REMARK 465 TYR C 27 REMARK 465 ILE C 28 REMARK 465 GLU C 29 REMARK 465 LYS C 30 REMARK 465 ARG C 31 REMARK 465 ALA C 32 REMARK 465 PHE C 113 REMARK 465 GLY D 186 REMARK 465 ASN D 200 REMARK 465 ASN D 201 REMARK 465 ALA D 260 REMARK 465 LYS D 261 REMARK 465 LYS D 262 REMARK 465 ASP D 263 REMARK 465 GLU E 198 REMARK 465 GLY E 199 REMARK 465 ASN E 200 REMARK 465 ASP E 263 REMARK 465 MET F 21 REMARK 465 GLU F 22 REMARK 465 THR F 23 REMARK 465 GLY F 24 REMARK 465 ASN F 25 REMARK 465 LYS F 26 REMARK 465 TYR F 27 REMARK 465 ILE F 28 REMARK 465 GLU F 29 REMARK 465 LYS F 30 REMARK 465 ARG F 31 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 249 -79.77 -126.67 REMARK 500 GLN A 256 136.99 -170.50 REMARK 500 TRP C 74 -159.46 -152.76 REMARK 500 VAL D 249 -65.52 -126.90 REMARK 500 VAL E 249 -54.40 -123.05 REMARK 500 TRP F 74 -156.24 -152.87 REMARK 500 REMARK 500 REMARK: NULL DBREF 7A8X A 186 263 UNP D5L9G5 D5L9G5_ORYSJ 186 263 DBREF 7A8X B 186 263 UNP D5L9G5 D5L9G5_ORYSJ 186 263 DBREF 7A8X C 22 113 UNP G4MXW3 G4MXW3_MAGO7 22 113 DBREF 7A8X D 186 263 UNP D5L9G5 D5L9G5_ORYSJ 186 263 DBREF 7A8X E 186 263 UNP D5L9G5 D5L9G5_ORYSJ 186 263 DBREF 7A8X F 22 113 UNP G4MXW3 G4MXW3_MAGO7 22 113 SEQADV 7A8X MET C 21 UNP G4MXW3 INITIATING METHIONINE SEQADV 7A8X MET F 21 UNP G4MXW3 INITIATING METHIONINE SEQRES 1 A 78 GLY LEU LYS GLN LYS ILE VAL ILE LYS VAL ALA MET GLU SEQRES 2 A 78 GLY ASN ASN CYS ARG SER LYS ALA MET ALA LEU VAL ALA SEQRES 3 A 78 SER THR GLY GLY VAL ASP SER VAL ALA LEU VAL GLY ASP SEQRES 4 A 78 LEU ARG ASP LYS ILE GLU VAL VAL GLY TYR GLY ILE ASP SEQRES 5 A 78 PRO ILE LYS LEU ILE SER ALA LEU ARG LYS LYS VAL GLY SEQRES 6 A 78 ASP ALA GLU LEU LEU GLN VAL SER GLN ALA LYS LYS ASP SEQRES 1 B 78 GLY LEU LYS GLN LYS ILE VAL ILE LYS VAL ALA MET GLU SEQRES 2 B 78 GLY ASN ASN CYS ARG SER LYS ALA MET ALA LEU VAL ALA SEQRES 3 B 78 SER THR GLY GLY VAL ASP SER VAL ALA LEU VAL GLY ASP SEQRES 4 B 78 LEU ARG ASP LYS ILE GLU VAL VAL GLY TYR GLY ILE ASP SEQRES 5 B 78 PRO ILE LYS LEU ILE SER ALA LEU ARG LYS LYS VAL GLY SEQRES 6 B 78 ASP ALA GLU LEU LEU GLN VAL SER GLN ALA LYS LYS ASP SEQRES 1 C 93 MET GLU THR GLY ASN LYS TYR ILE GLU LYS ARG ALA ILE SEQRES 2 C 93 ASP LEU SER ARG GLU ARG ASP PRO ASN PHE PHE ASP ASN SEQRES 3 C 93 PRO GLY ILE PRO VAL PRO GLU CYS PHE TRP PHE MET PHE SEQRES 4 C 93 LYS ASN ASN VAL ARG GLN ASP ASP GLY THR CYS TYR SER SEQRES 5 C 93 SER TRP LYS MET ASP MET LYS VAL GLY PRO ASN TRP VAL SEQRES 6 C 93 HIS ILE LYS SER ASP ASP ASN CYS ASN LEU SER GLY ASP SEQRES 7 C 93 PHE PRO PRO GLY TRP ILE VAL LEU GLY LYS LYS ARG PRO SEQRES 8 C 93 GLY PHE SEQRES 1 D 78 GLY LEU LYS GLN LYS ILE VAL ILE LYS VAL ALA MET GLU SEQRES 2 D 78 GLY ASN ASN CYS ARG SER LYS ALA MET ALA LEU VAL ALA SEQRES 3 D 78 SER THR GLY GLY VAL ASP SER VAL ALA LEU VAL GLY ASP SEQRES 4 D 78 LEU ARG ASP LYS ILE GLU VAL VAL GLY TYR GLY ILE ASP SEQRES 5 D 78 PRO ILE LYS LEU ILE SER ALA LEU ARG LYS LYS VAL GLY SEQRES 6 D 78 ASP ALA GLU LEU LEU GLN VAL SER GLN ALA LYS LYS ASP SEQRES 1 E 78 GLY LEU LYS GLN LYS ILE VAL ILE LYS VAL ALA MET GLU SEQRES 2 E 78 GLY ASN ASN CYS ARG SER LYS ALA MET ALA LEU VAL ALA SEQRES 3 E 78 SER THR GLY GLY VAL ASP SER VAL ALA LEU VAL GLY ASP SEQRES 4 E 78 LEU ARG ASP LYS ILE GLU VAL VAL GLY TYR GLY ILE ASP SEQRES 5 E 78 PRO ILE LYS LEU ILE SER ALA LEU ARG LYS LYS VAL GLY SEQRES 6 E 78 ASP ALA GLU LEU LEU GLN VAL SER GLN ALA LYS LYS ASP SEQRES 1 F 93 MET GLU THR GLY ASN LYS TYR ILE GLU LYS ARG ALA ILE SEQRES 2 F 93 ASP LEU SER ARG GLU ARG ASP PRO ASN PHE PHE ASP ASN SEQRES 3 F 93 PRO GLY ILE PRO VAL PRO GLU CYS PHE TRP PHE MET PHE SEQRES 4 F 93 LYS ASN ASN VAL ARG GLN ASP ASP GLY THR CYS TYR SER SEQRES 5 F 93 SER TRP LYS MET ASP MET LYS VAL GLY PRO ASN TRP VAL SEQRES 6 F 93 HIS ILE LYS SER ASP ASP ASN CYS ASN LEU SER GLY ASP SEQRES 7 F 93 PHE PRO PRO GLY TRP ILE VAL LEU GLY LYS LYS ARG PRO SEQRES 8 F 93 GLY PHE FORMUL 7 HOH *116(H2 O) HELIX 1 AA1 ASN A 201 SER A 212 1 12 HELIX 2 AA2 ASP A 237 VAL A 249 1 13 HELIX 3 AA3 CYS B 202 SER B 212 1 11 HELIX 4 AA4 ASP B 237 VAL B 249 1 13 HELIX 5 AA5 ARG D 203 THR D 213 1 11 HELIX 6 AA6 ASP D 237 VAL D 249 1 13 HELIX 7 AA7 CYS E 202 SER E 212 1 11 HELIX 8 AA8 ASP E 237 VAL E 249 1 13 HELIX 9 AA9 ASP F 34 GLU F 38 5 5 SHEET 1 AA111 ALA A 252 SER A 258 0 SHEET 2 AA111 GLN A 189 VAL A 195 -1 N LYS A 194 O GLU A 253 SHEET 3 AA111 LYS A 228 GLY A 233 -1 O GLY A 233 N GLN A 189 SHEET 4 AA111 VAL A 216 VAL A 222 -1 N ALA A 220 O GLU A 230 SHEET 5 AA111 VAL B 216 VAL B 222 -1 O LEU B 221 N ASP A 217 SHEET 6 AA111 LYS B 228 GLY B 233 -1 O VAL B 232 N ASP B 217 SHEET 7 AA111 GLN B 189 VAL B 195 -1 N ILE B 191 O VAL B 231 SHEET 8 AA111 ALA B 252 GLN B 259 -1 O SER B 258 N LYS B 190 SHEET 9 AA111 TRP C 74 VAL C 80 -1 O ASP C 77 N VAL B 257 SHEET 10 AA111 ASN C 83 SER C 89 -1 O ASN C 83 N VAL C 80 SHEET 11 AA111 LEU C 95 SER C 96 -1 O SER C 96 N LYS C 88 SHEET 1 AA2 3 VAL C 63 CYS C 70 0 SHEET 2 AA2 3 CYS C 54 LYS C 60 -1 N MET C 58 O GLN C 65 SHEET 3 AA2 3 TRP C 103 LYS C 109 -1 O LYS C 108 N PHE C 55 SHEET 1 AA311 ALA D 252 SER D 258 0 SHEET 2 AA311 LYS D 188 VAL D 195 -1 N VAL D 192 O GLN D 256 SHEET 3 AA311 LYS D 228 TYR D 234 -1 O VAL D 231 N ILE D 191 SHEET 4 AA311 VAL D 216 VAL D 222 -1 N ALA D 220 O GLU D 230 SHEET 5 AA311 VAL E 216 VAL E 222 -1 O LEU E 221 N ASP D 217 SHEET 6 AA311 LYS E 228 GLY E 233 -1 O VAL E 232 N ASP E 217 SHEET 7 AA311 GLN E 189 VAL E 195 -1 N GLN E 189 O GLY E 233 SHEET 8 AA311 ALA E 252 GLN E 259 -1 O LEU E 255 N VAL E 192 SHEET 9 AA311 TRP F 74 VAL F 80 -1 O LYS F 79 N LEU E 255 SHEET 10 AA311 ASN F 83 SER F 89 -1 O ASN F 83 N VAL F 80 SHEET 11 AA311 LEU F 95 SER F 96 -1 O SER F 96 N LYS F 88 SHEET 1 AA4 3 VAL F 63 CYS F 70 0 SHEET 2 AA4 3 CYS F 54 LYS F 60 -1 N MET F 58 O GLN F 65 SHEET 3 AA4 3 TRP F 103 LYS F 109 -1 O ILE F 104 N PHE F 59 SSBOND 1 CYS C 54 CYS C 93 1555 1555 2.04 SSBOND 2 CYS F 54 CYS F 93 1555 1555 2.06 CRYST1 65.351 83.121 107.842 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015302 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012031 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009273 0.00000