HEADER PROTEIN BINDING 01-SEP-20 7A9B TITLE CRYSTAL STRUCTURE OF SHANK1 PDZ DOMAIN WITH ARAP3-DERIVED PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SH3 AND MULTIPLE ANKYRIN REPEAT DOMAINS PROTEIN 1,ARF-GAP COMPND 3 WITH RHO-GAP DOMAIN, ANK REPEAT AND PH DOMAIN-CONTAINING PROTEIN 3; COMPND 4 CHAIN: A, B; COMPND 5 SYNONYM: SHANK1,GKAP/SAPAP-INTERACTING PROTEIN,SPANK-1,SOMATOSTATIN COMPND 6 RECEPTOR-INTERACTING PROTEIN,SSTRIP,SYNAMON,CENTAURIN-DELTA-3,CNT-D3; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS, HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT, HUMAN; SOURCE 4 ORGANISM_TAXID: 10116, 9606; SOURCE 5 GENE: SHANK1, ARAP3, CENTD3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SHANK1, PDZ DOMAIN, PROTEIN-PROTEIN INTERACTION, INTERNAL PEPTIDE KEYWDS 2 BINDING MOTIF, ARAP3, PROTEIN BINDING, STRUCTURAL GENOMICS, KEYWDS 3 STRUCTURAL GENOMICS CONSORTIUM, SGC EXPDTA X-RAY DIFFRACTION AUTHOR M.MARIAM MCAULEY,M.ALI,Y.IVARSSON,S.KNAPP,A.C.JOERGER,STRUCTURAL AUTHOR 2 GENOMICS CONSORTIUM (SGC) REVDAT 2 31-JAN-24 7A9B 1 REMARK REVDAT 1 21-OCT-20 7A9B 0 JRNL AUTH M.MARIAM MCAULEY,M.ALI,Y.IVARSSON,S.KNAPP,A.C.JOERGER, JRNL AUTH 2 STRUCTURAL GENOMICS CONSORTIUM (SGC) JRNL TITL CRYSTAL STRUCTURE OF SHANK1 PDZ DOMAIN WITH ARAP3-DERIVED JRNL TITL 2 PEPTIDE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.93 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.341 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 23944 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.049 REMARK 3 FREE R VALUE TEST SET COUNT : 1209 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.9000 - 4.1594 1.00 2782 151 0.1880 0.2021 REMARK 3 2 4.1594 - 3.3017 1.00 2567 158 0.1695 0.2612 REMARK 3 3 3.3017 - 2.8844 1.00 2540 138 0.2112 0.2767 REMARK 3 4 2.8844 - 2.6207 1.00 2496 136 0.2226 0.2824 REMARK 3 5 2.6207 - 2.4329 1.00 2494 123 0.2258 0.2685 REMARK 3 6 2.4329 - 2.2894 1.00 2488 137 0.2266 0.2716 REMARK 3 7 2.2894 - 2.1748 1.00 2452 122 0.2210 0.2479 REMARK 3 8 2.1748 - 2.0801 1.00 2491 121 0.2254 0.2752 REMARK 3 9 2.0801 - 2.0000 1.00 2425 123 0.2359 0.2701 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.243 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.085 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.79 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1902 REMARK 3 ANGLE : 0.760 2574 REMARK 3 CHIRALITY : 0.050 297 REMARK 3 PLANARITY : 0.006 335 REMARK 3 DIHEDRAL : 16.667 1126 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 19 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 650 THROUGH 656 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.6655 -3.8843 -18.7561 REMARK 3 T TENSOR REMARK 3 T11: 0.5891 T22: 0.8563 REMARK 3 T33: 0.9034 T12: -0.1851 REMARK 3 T13: 0.1277 T23: 0.0231 REMARK 3 L TENSOR REMARK 3 L11: 6.0068 L22: 5.5321 REMARK 3 L33: 4.0878 L12: 2.9617 REMARK 3 L13: 4.9505 L23: 2.6480 REMARK 3 S TENSOR REMARK 3 S11: -0.0163 S12: 0.1238 S13: -0.3982 REMARK 3 S21: 0.0840 S22: -0.7586 S23: -0.0339 REMARK 3 S31: 0.2586 S32: -0.6019 S33: 0.6618 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 657 THROUGH 667 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.5747 13.3397 -21.7698 REMARK 3 T TENSOR REMARK 3 T11: 0.5286 T22: 0.1933 REMARK 3 T33: 0.3763 T12: -0.1560 REMARK 3 T13: -0.0361 T23: 0.0121 REMARK 3 L TENSOR REMARK 3 L11: 3.7112 L22: 5.6030 REMARK 3 L33: 2.5870 L12: 4.5539 REMARK 3 L13: -3.0765 L23: -3.7685 REMARK 3 S TENSOR REMARK 3 S11: -0.0894 S12: -0.2548 S13: 0.0335 REMARK 3 S21: -0.5715 S22: -0.1666 S23: 0.1426 REMARK 3 S31: -0.5097 S32: 0.0361 S33: 0.0994 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 668 THROUGH 680 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.0701 21.4304 -12.9048 REMARK 3 T TENSOR REMARK 3 T11: 0.6229 T22: 0.1311 REMARK 3 T33: 0.3698 T12: -0.5645 REMARK 3 T13: 0.0183 T23: 0.0111 REMARK 3 L TENSOR REMARK 3 L11: 1.6749 L22: 2.9648 REMARK 3 L33: 1.3961 L12: 1.0627 REMARK 3 L13: -0.9881 L23: -0.9652 REMARK 3 S TENSOR REMARK 3 S11: -0.0704 S12: 0.0145 S13: 0.1952 REMARK 3 S21: -0.2721 S22: 0.2142 S23: -0.3277 REMARK 3 S31: -0.6132 S32: 0.6056 S33: 0.1081 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 681 THROUGH 689 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.8664 -3.0337 -9.4800 REMARK 3 T TENSOR REMARK 3 T11: 0.5833 T22: 0.5447 REMARK 3 T33: 1.0340 T12: -0.0001 REMARK 3 T13: -0.1076 T23: 0.1446 REMARK 3 L TENSOR REMARK 3 L11: 8.1951 L22: 7.6163 REMARK 3 L33: 3.0346 L12: -1.1826 REMARK 3 L13: -3.0716 L23: 1.0431 REMARK 3 S TENSOR REMARK 3 S11: 0.2630 S12: -0.9200 S13: -2.8975 REMARK 3 S21: 1.2559 S22: -0.3674 S23: -1.6784 REMARK 3 S31: 1.5145 S32: 1.0202 S33: -0.0382 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 690 THROUGH 705 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.0998 5.1798 -12.9690 REMARK 3 T TENSOR REMARK 3 T11: 0.2457 T22: 0.1770 REMARK 3 T33: 0.2914 T12: -0.0708 REMARK 3 T13: -0.0009 T23: 0.0173 REMARK 3 L TENSOR REMARK 3 L11: 4.8149 L22: 3.3540 REMARK 3 L33: 4.0061 L12: 0.4210 REMARK 3 L13: 0.3098 L23: -1.2876 REMARK 3 S TENSOR REMARK 3 S11: 0.0924 S12: -0.0476 S13: -0.5535 REMARK 3 S21: 0.0696 S22: -0.0848 S23: 0.0980 REMARK 3 S31: 0.2077 S32: 0.1619 S33: 0.0204 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 706 THROUGH 714 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.1167 25.2902 -13.8548 REMARK 3 T TENSOR REMARK 3 T11: 0.9146 T22: 0.0202 REMARK 3 T33: 0.3314 T12: -0.2459 REMARK 3 T13: 0.0742 T23: 0.0347 REMARK 3 L TENSOR REMARK 3 L11: 2.5936 L22: 8.0974 REMARK 3 L33: 1.6978 L12: 0.2634 REMARK 3 L13: -0.3366 L23: -1.3561 REMARK 3 S TENSOR REMARK 3 S11: 0.2181 S12: -0.0686 S13: 0.4188 REMARK 3 S21: 0.4132 S22: 0.1100 S23: 0.3148 REMARK 3 S31: -0.4925 S32: -0.0341 S33: 0.0119 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 715 THROUGH 725 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.5717 12.8956 -16.4987 REMARK 3 T TENSOR REMARK 3 T11: 0.3779 T22: 0.2287 REMARK 3 T33: 0.3201 T12: -0.1188 REMARK 3 T13: -0.0301 T23: 0.0414 REMARK 3 L TENSOR REMARK 3 L11: 3.2697 L22: 3.4515 REMARK 3 L33: 2.5696 L12: -1.7510 REMARK 3 L13: -2.0080 L23: 0.9433 REMARK 3 S TENSOR REMARK 3 S11: 0.1699 S12: 0.1253 S13: 0.0446 REMARK 3 S21: -0.2369 S22: -0.1150 S23: 0.0346 REMARK 3 S31: -0.4872 S32: 0.0301 S33: -0.0224 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 726 THROUGH 734 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.5529 6.1674 -20.8148 REMARK 3 T TENSOR REMARK 3 T11: 0.3092 T22: 0.3233 REMARK 3 T33: 0.3452 T12: -0.1274 REMARK 3 T13: 0.0342 T23: 0.0333 REMARK 3 L TENSOR REMARK 3 L11: 3.0795 L22: 2.1018 REMARK 3 L33: 4.2984 L12: -1.9083 REMARK 3 L13: 2.6363 L23: -2.9558 REMARK 3 S TENSOR REMARK 3 S11: -0.0614 S12: 0.4873 S13: -0.1087 REMARK 3 S21: -0.3960 S22: -0.2740 S23: -0.6326 REMARK 3 S31: -0.3900 S32: 1.0110 S33: 0.3524 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 735 THROUGH 745 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.9901 11.6617 -15.1305 REMARK 3 T TENSOR REMARK 3 T11: 0.3282 T22: 0.5052 REMARK 3 T33: 0.3738 T12: -0.3892 REMARK 3 T13: 0.0157 T23: 0.0169 REMARK 3 L TENSOR REMARK 3 L11: 4.1348 L22: 1.8658 REMARK 3 L33: 4.1822 L12: 1.9906 REMARK 3 L13: -2.2795 L23: -2.1268 REMARK 3 S TENSOR REMARK 3 S11: -0.2073 S12: -0.0176 S13: -0.3793 REMARK 3 S21: -0.1039 S22: -0.1436 S23: -0.7515 REMARK 3 S31: -0.2548 S32: 0.6907 S33: 0.2408 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 746 THROUGH 758 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.8765 13.2891 -19.3584 REMARK 3 T TENSOR REMARK 3 T11: 0.4572 T22: 0.2362 REMARK 3 T33: 0.3315 T12: -0.2031 REMARK 3 T13: 0.0287 T23: -0.0015 REMARK 3 L TENSOR REMARK 3 L11: 5.2787 L22: 4.1975 REMARK 3 L33: 0.8874 L12: 4.5458 REMARK 3 L13: -1.3859 L23: -1.6104 REMARK 3 S TENSOR REMARK 3 S11: 0.0329 S12: -0.3945 S13: 0.1816 REMARK 3 S21: -0.1614 S22: -0.1502 S23: 0.1109 REMARK 3 S31: -0.8209 S32: 0.2119 S33: -0.0854 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 759 THROUGH 785 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.9668 15.5387 -8.9659 REMARK 3 T TENSOR REMARK 3 T11: 0.8063 T22: 0.9382 REMARK 3 T33: 0.5162 T12: 0.4764 REMARK 3 T13: -0.1309 T23: 0.0295 REMARK 3 L TENSOR REMARK 3 L11: 2.3164 L22: 6.6219 REMARK 3 L33: 1.0150 L12: -2.9271 REMARK 3 L13: -0.6803 L23: -0.6811 REMARK 3 S TENSOR REMARK 3 S11: 0.0192 S12: 0.2060 S13: -0.1648 REMARK 3 S21: -0.5767 S22: -0.2639 S23: 0.9186 REMARK 3 S31: -0.5233 S32: -0.9012 S33: 0.1462 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 650 THROUGH 667 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.4198 4.9718 1.4574 REMARK 3 T TENSOR REMARK 3 T11: 0.2443 T22: 0.1738 REMARK 3 T33: 0.2701 T12: 0.0139 REMARK 3 T13: -0.0141 T23: 0.0392 REMARK 3 L TENSOR REMARK 3 L11: 1.9720 L22: 8.8239 REMARK 3 L33: 4.8744 L12: -2.6390 REMARK 3 L13: -1.3094 L23: 3.5059 REMARK 3 S TENSOR REMARK 3 S11: -0.2819 S12: -0.0907 S13: -0.0924 REMARK 3 S21: 0.5707 S22: 0.3075 S23: 0.1083 REMARK 3 S31: 0.0421 S32: -0.0437 S33: 0.0399 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 668 THROUGH 705 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.2936 16.8808 -3.2225 REMARK 3 T TENSOR REMARK 3 T11: 0.6857 T22: 0.5692 REMARK 3 T33: 0.3312 T12: 0.3282 REMARK 3 T13: -0.0685 T23: -0.0523 REMARK 3 L TENSOR REMARK 3 L11: 2.0387 L22: 3.8392 REMARK 3 L33: 1.8723 L12: -1.9331 REMARK 3 L13: -1.5197 L23: 0.7068 REMARK 3 S TENSOR REMARK 3 S11: 0.1663 S12: 0.3922 S13: -0.0196 REMARK 3 S21: -0.4251 S22: -0.2693 S23: 0.7264 REMARK 3 S31: -1.1633 S32: -1.4196 S33: 0.4442 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 706 THROUGH 714 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.7833 25.0649 0.4673 REMARK 3 T TENSOR REMARK 3 T11: 1.0249 T22: 0.2286 REMARK 3 T33: 0.4841 T12: 0.0467 REMARK 3 T13: 0.0520 T23: 0.0506 REMARK 3 L TENSOR REMARK 3 L11: 5.5075 L22: 7.0309 REMARK 3 L33: 3.6634 L12: -0.7438 REMARK 3 L13: -1.9867 L23: 1.8267 REMARK 3 S TENSOR REMARK 3 S11: -0.2182 S12: 0.2956 S13: 0.7867 REMARK 3 S21: -0.5033 S22: 0.2589 S23: -0.2278 REMARK 3 S31: -0.5696 S32: -0.1672 S33: -0.0496 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 715 THROUGH 734 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.1304 13.4450 1.5904 REMARK 3 T TENSOR REMARK 3 T11: 0.4055 T22: 0.4821 REMARK 3 T33: 0.3782 T12: 0.1902 REMARK 3 T13: 0.0175 T23: -0.0618 REMARK 3 L TENSOR REMARK 3 L11: 6.4084 L22: 4.1609 REMARK 3 L33: 5.1628 L12: -1.2920 REMARK 3 L13: -0.1841 L23: -0.0255 REMARK 3 S TENSOR REMARK 3 S11: -0.1238 S12: 0.0093 S13: -0.6560 REMARK 3 S21: 0.1575 S22: -0.0909 S23: 0.4315 REMARK 3 S31: -0.7447 S32: -1.2328 S33: 0.1771 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 735 THROUGH 761 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.1142 14.5869 1.1517 REMARK 3 T TENSOR REMARK 3 T11: 0.5190 T22: 0.5255 REMARK 3 T33: 0.3499 T12: 0.3404 REMARK 3 T13: -0.0373 T23: -0.0438 REMARK 3 L TENSOR REMARK 3 L11: 1.3315 L22: 2.5901 REMARK 3 L33: 2.9790 L12: -0.5868 REMARK 3 L13: -1.5965 L23: 1.9195 REMARK 3 S TENSOR REMARK 3 S11: -0.1463 S12: 0.2749 S13: -0.0005 REMARK 3 S21: 0.1673 S22: -0.1989 S23: 0.4368 REMARK 3 S31: -0.6279 S32: -1.1896 S33: 0.1288 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 762 THROUGH 771 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.7310 -15.3958 -4.6026 REMARK 3 T TENSOR REMARK 3 T11: 0.6275 T22: 0.3122 REMARK 3 T33: 0.4740 T12: 0.0977 REMARK 3 T13: 0.0886 T23: -0.0099 REMARK 3 L TENSOR REMARK 3 L11: 6.9537 L22: 3.8544 REMARK 3 L33: 7.2336 L12: -1.7611 REMARK 3 L13: 3.7268 L23: 3.2792 REMARK 3 S TENSOR REMARK 3 S11: -0.0994 S12: 0.3630 S13: -0.4001 REMARK 3 S21: -0.2416 S22: 0.1981 S23: -0.9477 REMARK 3 S31: 1.8725 S32: 0.8589 S33: 0.0071 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 772 THROUGH 776 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.2011 -8.2462 0.1860 REMARK 3 T TENSOR REMARK 3 T11: 0.3453 T22: 0.2238 REMARK 3 T33: 0.4383 T12: 0.0112 REMARK 3 T13: 0.0385 T23: 0.0232 REMARK 3 L TENSOR REMARK 3 L11: 6.0681 L22: 5.8956 REMARK 3 L33: 5.6017 L12: 5.9545 REMARK 3 L13: -5.7422 L23: -5.7295 REMARK 3 S TENSOR REMARK 3 S11: -0.4585 S12: -0.2435 S13: -0.9276 REMARK 3 S21: -0.1322 S22: -0.1506 S23: -1.1143 REMARK 3 S31: 0.5644 S32: 0.6659 S33: 0.5139 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 777 THROUGH 787 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.7535 12.1221 -6.3814 REMARK 3 T TENSOR REMARK 3 T11: 0.3713 T22: 0.4316 REMARK 3 T33: 0.2976 T12: -0.1829 REMARK 3 T13: -0.0536 T23: 0.0227 REMARK 3 L TENSOR REMARK 3 L11: 6.6336 L22: 3.9164 REMARK 3 L33: 3.1248 L12: 4.3253 REMARK 3 L13: -1.8819 L23: -2.5838 REMARK 3 S TENSOR REMARK 3 S11: 0.1317 S12: -0.4083 S13: -0.1398 REMARK 3 S21: 0.4837 S22: 0.0493 S23: -0.3863 REMARK 3 S31: -0.6009 S32: 0.5246 S33: -0.1201 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7A9B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-SEP-20. REMARK 100 THE DEPOSITION ID IS D_1292110973. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.999 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24047 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 47.932 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 9.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1Q3O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 NL OF PROTEIN SOLUTION (15 MG/ML REMARK 280 MUTANT PROTEIN IN 10 MM HEPES BUFFER, PH 8.0, 150 MM NACL, 5% (V/ REMARK 280 V) GLYCEROL AND 0.5 MM TCEP) WERE MIXED WITH 100 NL RESERVOIR REMARK 280 BUFFER (16% (W/V) POLYETHYLENE GLYCOL 3350 AND 0.2 M AMMONIUM REMARK 280 CITRATE), ABOVE A RESERVOIR VOLUME OF 20 MICROL, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 82.98900 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 165.97800 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 124.48350 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 207.47250 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 41.49450 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 82.98900 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 165.97800 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 207.47250 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 124.48350 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 41.49450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 649 REMARK 465 ASP A 763 REMARK 465 ALA A 764 REMARK 465 ALA A 765 REMARK 465 ALA A 766 REMARK 465 GLY A 767 REMARK 465 SER A 768 REMARK 465 GLY A 769 REMARK 465 SER A 770 REMARK 465 GLY A 771 REMARK 465 SER A 772 REMARK 465 PHE A 773 REMARK 465 PRO A 774 REMARK 465 GLU A 775 REMARK 465 LEU A 776 REMARK 465 ILE A 777 REMARK 465 THR A 786 REMARK 465 THR A 787 REMARK 465 ARG A 788 REMARK 465 GLY B 649 REMARK 465 ALA B 683 REMARK 465 GLN B 684 REMARK 465 THR B 685 REMARK 465 PRO B 686 REMARK 465 ILE B 687 REMARK 465 GLU B 688 REMARK 465 ARG B 788 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 660 CE NZ REMARK 470 LYS A 662 CG CD CE NZ REMARK 470 GLN A 684 CG CD OE1 NE2 REMARK 470 ILE A 687 CG1 CG2 CD1 REMARK 470 GLU A 688 CG CD OE1 OE2 REMARK 470 LYS A 732 CE NZ REMARK 470 ARG A 736 CD NE CZ NH1 NH2 REMARK 470 GLN A 744 CG CD OE1 NE2 REMARK 470 HIS A 759 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 669 CD CE NZ REMARK 470 LYS B 682 CG CD CE NZ REMARK 470 GLU B 689 CG CD OE1 OE2 REMARK 470 ARG B 713 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 728 CG CD OE1 NE2 REMARK 470 ARG B 736 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 744 CG CD OE1 NE2 REMARK 470 ASN B 747 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE B 696 87.57 -154.72 REMARK 500 MET B 762 31.60 -97.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 801 DBREF 7A9B A 654 763 UNP Q9WV48 SHAN1_RAT 654 763 DBREF 7A9B A 773 788 UNP Q8WWN8 ARAP3_HUMAN 1414 1429 DBREF 7A9B B 654 763 UNP Q9WV48 SHAN1_RAT 654 763 DBREF 7A9B B 773 788 UNP Q8WWN8 ARAP3_HUMAN 1414 1429 SEQADV 7A9B GLY A 649 UNP Q9WV48 EXPRESSION TAG SEQADV 7A9B ALA A 650 UNP Q9WV48 EXPRESSION TAG SEQADV 7A9B MET A 651 UNP Q9WV48 EXPRESSION TAG SEQADV 7A9B GLY A 652 UNP Q9WV48 EXPRESSION TAG SEQADV 7A9B PRO A 653 UNP Q9WV48 EXPRESSION TAG SEQADV 7A9B ALA A 764 UNP Q9WV48 LINKER SEQADV 7A9B ALA A 765 UNP Q9WV48 LINKER SEQADV 7A9B ALA A 766 UNP Q9WV48 LINKER SEQADV 7A9B GLY A 767 UNP Q9WV48 LINKER SEQADV 7A9B SER A 768 UNP Q9WV48 LINKER SEQADV 7A9B GLY A 769 UNP Q9WV48 LINKER SEQADV 7A9B SER A 770 UNP Q9WV48 LINKER SEQADV 7A9B GLY A 771 UNP Q9WV48 LINKER SEQADV 7A9B SER A 772 UNP Q9WV48 LINKER SEQADV 7A9B GLY B 649 UNP Q9WV48 EXPRESSION TAG SEQADV 7A9B ALA B 650 UNP Q9WV48 EXPRESSION TAG SEQADV 7A9B MET B 651 UNP Q9WV48 EXPRESSION TAG SEQADV 7A9B GLY B 652 UNP Q9WV48 EXPRESSION TAG SEQADV 7A9B PRO B 653 UNP Q9WV48 EXPRESSION TAG SEQADV 7A9B ALA B 764 UNP Q9WV48 LINKER SEQADV 7A9B ALA B 765 UNP Q9WV48 LINKER SEQADV 7A9B ALA B 766 UNP Q9WV48 LINKER SEQADV 7A9B GLY B 767 UNP Q9WV48 LINKER SEQADV 7A9B SER B 768 UNP Q9WV48 LINKER SEQADV 7A9B GLY B 769 UNP Q9WV48 LINKER SEQADV 7A9B SER B 770 UNP Q9WV48 LINKER SEQADV 7A9B GLY B 771 UNP Q9WV48 LINKER SEQADV 7A9B SER B 772 UNP Q9WV48 LINKER SEQRES 1 A 140 GLY ALA MET GLY PRO GLY SER ASP TYR ILE ILE LYS GLU SEQRES 2 A 140 LYS THR VAL LEU LEU GLN LYS LYS ASP SER GLU GLY PHE SEQRES 3 A 140 GLY PHE VAL LEU ARG GLY ALA LYS ALA GLN THR PRO ILE SEQRES 4 A 140 GLU GLU PHE THR PRO THR PRO ALA PHE PRO ALA LEU GLN SEQRES 5 A 140 TYR LEU GLU SER VAL ASP GLU GLY GLY VAL ALA TRP ARG SEQRES 6 A 140 ALA GLY LEU ARG MET GLY ASP PHE LEU ILE GLU VAL ASN SEQRES 7 A 140 GLY GLN ASN VAL VAL LYS VAL GLY HIS ARG GLN VAL VAL SEQRES 8 A 140 ASN MET ILE ARG GLN GLY GLY ASN THR LEU MET VAL LYS SEQRES 9 A 140 VAL VAL MET VAL THR ARG HIS PRO ASP MET ASP ALA ALA SEQRES 10 A 140 ALA GLY SER GLY SER GLY SER PHE PRO GLU LEU ILE GLN SEQRES 11 A 140 ASP THR SER THR SER PHE SER THR THR ARG SEQRES 1 B 140 GLY ALA MET GLY PRO GLY SER ASP TYR ILE ILE LYS GLU SEQRES 2 B 140 LYS THR VAL LEU LEU GLN LYS LYS ASP SER GLU GLY PHE SEQRES 3 B 140 GLY PHE VAL LEU ARG GLY ALA LYS ALA GLN THR PRO ILE SEQRES 4 B 140 GLU GLU PHE THR PRO THR PRO ALA PHE PRO ALA LEU GLN SEQRES 5 B 140 TYR LEU GLU SER VAL ASP GLU GLY GLY VAL ALA TRP ARG SEQRES 6 B 140 ALA GLY LEU ARG MET GLY ASP PHE LEU ILE GLU VAL ASN SEQRES 7 B 140 GLY GLN ASN VAL VAL LYS VAL GLY HIS ARG GLN VAL VAL SEQRES 8 B 140 ASN MET ILE ARG GLN GLY GLY ASN THR LEU MET VAL LYS SEQRES 9 B 140 VAL VAL MET VAL THR ARG HIS PRO ASP MET ASP ALA ALA SEQRES 10 B 140 ALA GLY SER GLY SER GLY SER PHE PRO GLU LEU ILE GLN SEQRES 11 B 140 ASP THR SER THR SER PHE SER THR THR ARG HET EDO B 801 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO C2 H6 O2 FORMUL 4 HOH *122(H2 O) HELIX 1 AA1 GLN A 684 PHE A 690 5 7 HELIX 2 AA2 GLY A 709 ALA A 714 1 6 HELIX 3 AA3 GLY A 734 GLY A 745 1 12 HELIX 4 AA4 GLY B 709 GLY B 715 1 7 HELIX 5 AA5 GLY B 734 GLY B 745 1 12 SHEET 1 AA1 4 TYR A 657 GLN A 667 0 SHEET 2 AA1 4 THR A 748 ARG A 758 -1 O LEU A 749 N LEU A 666 SHEET 3 AA1 4 PHE A 721 VAL A 725 -1 N PHE A 721 O VAL A 754 SHEET 4 AA1 4 GLN A 728 ASN A 729 -1 O GLN A 728 N VAL A 725 SHEET 1 AA2 3 GLN A 700 VAL A 705 0 SHEET 2 AA2 3 PHE A 676 ALA A 681 -1 N ARG A 679 O TYR A 701 SHEET 3 AA2 3 ASP B 779 SER B 783 -1 O THR B 782 N LEU A 678 SHEET 1 AA3 3 ASP A 779 SER A 783 0 SHEET 2 AA3 3 PHE B 676 ALA B 681 -1 O LEU B 678 N THR A 782 SHEET 3 AA3 3 GLN B 700 VAL B 705 -1 O GLU B 703 N VAL B 677 SHEET 1 AA4 4 GLY B 654 GLN B 667 0 SHEET 2 AA4 4 THR B 748 ASP B 761 -1 O THR B 757 N ILE B 658 SHEET 3 AA4 4 PHE B 721 VAL B 725 -1 N ILE B 723 O LYS B 752 SHEET 4 AA4 4 GLN B 728 ASN B 729 -1 O GLN B 728 N VAL B 725 SITE 1 AC1 2 HOH A 836 GLY B 719 CRYST1 67.799 67.799 248.967 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014749 0.008516 0.000000 0.00000 SCALE2 0.000000 0.017031 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004017 0.00000