HEADER LIGASE 02-SEP-20 7A9I TITLE CRYSTAL STRUCTURE OF CORONAFACIC ACID LIGASE FROM PECTOBACTERIUM TITLE 2 BRASILIENSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CFL; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: LIGASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PECTOBACTERIUM BRASILIENSE; SOURCE 3 ORGANISM_TAXID: 180957; SOURCE 4 GENE: CFL, KCO_08370, KU74_07105; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR C.W.LEVY REVDAT 3 01-MAY-24 7A9I 1 REMARK REVDAT 2 02-JUN-21 7A9I 1 JRNL REVDAT 1 05-MAY-21 7A9I 0 JRNL AUTH M.WINN,M.ROWLINSON,F.WANG,L.BERING,D.FRANCIS,C.LEVY, JRNL AUTH 2 J.MICKLEFIELD JRNL TITL DISCOVERY, CHARACTERIZATION AND ENGINEERING OF LIGASES FOR JRNL TITL 2 AMIDE SYNTHESIS. JRNL REF NATURE V. 593 391 2021 JRNL REFN ESSN 1476-4687 JRNL PMID 34012085 JRNL DOI 10.1038/S41586-021-03447-W REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.V.AFONINE REMARK 1 TITL TOWARDS AUTOMATED CRYSTALLOGRAPHIC STRUCTURE REFINEMENT WITH REMARK 1 TITL 2 PHENIX.REFINE. REMARK 1 REF ACTA CRYSTALLOGR., SECT. D: V. 68 352 2012 REMARK 1 REF 2 BIOL. CRYSTALLOGR. REMARK 1 REFN ISSN 0907-4449 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 64.51 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 37967 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.260 REMARK 3 FREE R VALUE TEST SET COUNT : 1998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 64.5100 - 5.0600 1.00 2760 154 0.1871 0.2052 REMARK 3 2 5.0600 - 4.0100 1.00 2640 146 0.1504 0.1872 REMARK 3 3 4.0100 - 3.5100 1.00 2599 144 0.1714 0.1930 REMARK 3 4 3.5100 - 3.1900 1.00 2588 144 0.1975 0.2423 REMARK 3 5 3.1900 - 2.9600 1.00 2565 143 0.2158 0.2472 REMARK 3 6 2.9600 - 2.7800 1.00 2566 142 0.2226 0.2526 REMARK 3 7 2.7800 - 2.6400 1.00 2555 141 0.2100 0.2581 REMARK 3 8 2.6400 - 2.5300 1.00 2547 141 0.2090 0.2704 REMARK 3 9 2.5300 - 2.4300 1.00 2549 142 0.2212 0.2707 REMARK 3 10 2.4300 - 2.3500 1.00 2535 142 0.2302 0.2920 REMARK 3 11 2.3500 - 2.2700 1.00 2560 142 0.2456 0.3042 REMARK 3 12 2.2700 - 2.2100 1.00 2517 140 0.2759 0.3058 REMARK 3 13 2.2100 - 2.1500 1.00 2503 140 0.2683 0.3390 REMARK 3 14 2.1500 - 2.1000 0.97 2485 137 0.2829 0.3331 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.239 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.007 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.68 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4148 REMARK 3 ANGLE : 1.076 5633 REMARK 3 CHIRALITY : 0.064 637 REMARK 3 PLANARITY : 0.007 713 REMARK 3 DIHEDRAL : 16.487 547 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 22 THROUGH 197 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.0218 31.8943 25.6037 REMARK 3 T TENSOR REMARK 3 T11: 0.3150 T22: 0.2686 REMARK 3 T33: 0.3065 T12: -0.0396 REMARK 3 T13: 0.0170 T23: -0.0165 REMARK 3 L TENSOR REMARK 3 L11: 2.8474 L22: 1.6508 REMARK 3 L33: 2.8497 L12: 0.3751 REMARK 3 L13: 0.4723 L23: 0.1124 REMARK 3 S TENSOR REMARK 3 S11: 0.0358 S12: -0.2009 S13: 0.4604 REMARK 3 S21: 0.2407 S22: -0.0517 S23: -0.0636 REMARK 3 S31: -0.4209 S32: 0.1081 S33: 0.0126 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 198 THROUGH 417 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.8972 13.6235 6.0152 REMARK 3 T TENSOR REMARK 3 T11: 0.3053 T22: 0.3246 REMARK 3 T33: 0.3149 T12: -0.0530 REMARK 3 T13: 0.0070 T23: 0.0124 REMARK 3 L TENSOR REMARK 3 L11: 1.8891 L22: 1.3196 REMARK 3 L33: 3.0082 L12: 0.7731 REMARK 3 L13: 0.5304 L23: 1.0437 REMARK 3 S TENSOR REMARK 3 S11: -0.0180 S12: 0.2723 S13: -0.1680 REMARK 3 S21: -0.1779 S22: 0.1554 S23: -0.1159 REMARK 3 S31: 0.1695 S32: 0.1499 S33: -0.1251 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 418 THROUGH 537 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.1498 8.6795 -16.4261 REMARK 3 T TENSOR REMARK 3 T11: 0.5397 T22: 0.4103 REMARK 3 T33: 0.6489 T12: -0.0690 REMARK 3 T13: 0.0382 T23: 0.0286 REMARK 3 L TENSOR REMARK 3 L11: 2.3644 L22: 0.4742 REMARK 3 L33: 2.3567 L12: 0.7786 REMARK 3 L13: -2.2365 L23: -0.4283 REMARK 3 S TENSOR REMARK 3 S11: -0.4478 S12: -0.1357 S13: -0.8776 REMARK 3 S21: -0.2695 S22: 0.1690 S23: -0.4767 REMARK 3 S31: 0.6845 S32: -0.0436 S33: 0.2183 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7A9I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-SEP-20. REMARK 100 THE DEPOSITION ID IS D_1292111034. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9159 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37973 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 64.510 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.0700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 1.25200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: INHOUSE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M AMMONIUM SULFATE, 0.1M SODIUM HEPES REMARK 280 PH 7.5, 2% V/V PEG 400, PH 8.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 38.91400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 57.64650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.91400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 57.64650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 GLY A -19 REMARK 465 SER A -18 REMARK 465 SER A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 LEU A -7 REMARK 465 VAL A -6 REMARK 465 PRO A -5 REMARK 465 ARG A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 SER A 169 REMARK 465 GLY A 170 REMARK 465 THR A 171 REMARK 465 THR A 172 REMARK 465 GLY A 173 REMARK 465 HIS A 174 REMARK 465 PRO A 175 REMARK 465 SER A 203 REMARK 465 ASP A 204 REMARK 465 GLY A 205 REMARK 465 ASP A 206 REMARK 465 ASN A 489 REMARK 465 THR A 490 REMARK 465 THR A 491 REMARK 465 GLY A 492 REMARK 465 LYS A 493 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 459 O HOH A 701 2.11 REMARK 500 O HOH A 886 O HOH A 888 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 402 CA - CB - CG ANGL. DEV. = 19.6 DEGREES REMARK 500 ARG A 402 CD - NE - CZ ANGL. DEV. = 11.2 DEGREES REMARK 500 LEU A 458 CA - CB - CG ANGL. DEV. = 17.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 22 -166.98 -121.61 REMARK 500 HIS A 57 79.40 -151.40 REMARK 500 ASN A 137 -124.10 50.14 REMARK 500 ASN A 245 53.14 -104.48 REMARK 500 ASN A 276 -66.98 -11.63 REMARK 500 SER A 292 -147.64 -129.19 REMARK 500 ASP A 327 77.05 -165.66 REMARK 500 ASN A 349 51.60 -111.09 REMARK 500 SER A 379 2.16 -64.15 REMARK 500 ASN A 455 -50.60 74.06 REMARK 500 LEU A 458 -124.71 44.10 REMARK 500 LYS A 459 105.97 90.02 REMARK 500 SER A 495 97.06 66.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 402 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue R4Z A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 604 DBREF 7A9I A 1 516 UNP M4GWN4 M4GWN4_9GAMM 1 516 SEQADV 7A9I MET A -20 UNP M4GWN4 INITIATING METHIONINE SEQADV 7A9I GLY A -19 UNP M4GWN4 EXPRESSION TAG SEQADV 7A9I SER A -18 UNP M4GWN4 EXPRESSION TAG SEQADV 7A9I SER A -17 UNP M4GWN4 EXPRESSION TAG SEQADV 7A9I HIS A -16 UNP M4GWN4 EXPRESSION TAG SEQADV 7A9I HIS A -15 UNP M4GWN4 EXPRESSION TAG SEQADV 7A9I HIS A -14 UNP M4GWN4 EXPRESSION TAG SEQADV 7A9I HIS A -13 UNP M4GWN4 EXPRESSION TAG SEQADV 7A9I HIS A -12 UNP M4GWN4 EXPRESSION TAG SEQADV 7A9I HIS A -11 UNP M4GWN4 EXPRESSION TAG SEQADV 7A9I SER A -10 UNP M4GWN4 EXPRESSION TAG SEQADV 7A9I SER A -9 UNP M4GWN4 EXPRESSION TAG SEQADV 7A9I GLY A -8 UNP M4GWN4 EXPRESSION TAG SEQADV 7A9I LEU A -7 UNP M4GWN4 EXPRESSION TAG SEQADV 7A9I VAL A -6 UNP M4GWN4 EXPRESSION TAG SEQADV 7A9I PRO A -5 UNP M4GWN4 EXPRESSION TAG SEQADV 7A9I ARG A -4 UNP M4GWN4 EXPRESSION TAG SEQADV 7A9I GLY A -3 UNP M4GWN4 EXPRESSION TAG SEQADV 7A9I SER A -2 UNP M4GWN4 EXPRESSION TAG SEQADV 7A9I HIS A -1 UNP M4GWN4 EXPRESSION TAG SEQADV 7A9I MET A 0 UNP M4GWN4 EXPRESSION TAG SEQRES 1 A 537 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 537 LEU VAL PRO ARG GLY SER HIS MET MET ASN THR PHE SER SEQRES 3 A 537 SER PHE ARG LYS HIS ALA LEU LEU HIS SER LYS GLU THR SEQRES 4 A 537 ALA VAL LYS SER ILE ASN HIS ASN ILE SER PHE TYR ASN SEQRES 5 A 537 LEU LEU LEU LEU ILE GLN ARG ILE ALA THR GLY LEU LYS SEQRES 6 A 537 SER ALA ASN ILE LYS LYS GLY ASP ARG ILE SER ILE HIS SEQRES 7 A 537 MET GLY ASN CYS PHE GLU LEU ILE ALA THR TYR TYR ALA SEQRES 8 A 537 CYS LEU LYS ILE GLY ALA VAL PHE VAL PRO LEU SER LEU SEQRES 9 A 537 LYS LEU SER ALA LYS GLU VAL LYS ASN LEU ILE GLN HIS SEQRES 10 A 537 SER SER SER CYS ALA TYR ILE GLY ASP LYS LYS ARG PHE SEQRES 11 A 537 TYR GLU THR LYS GLN GLU ILE GLU SER CYS THR MET LEU SEQRES 12 A 537 GLU LYS ILE TRP VAL ILE ASP LEU LYS ILE GLU ASP LYS SEQRES 13 A 537 GLU ASN ASN THR HIS ASN TRP GLU GLU ILE ILE SER GLN SEQRES 14 A 537 PRO TYR ASP TYR SER GLU ASP ASN ILE TYR THR ASP GLU SEQRES 15 A 537 ILE ALA SER ILE PHE TYR THR SER GLY THR THR GLY HIS SEQRES 16 A 537 PRO LYS GLY ILE VAL TYR SER GLN LYS THR LEU ILE ASP SEQRES 17 A 537 ALA VAL ASN LEU THR LYS VAL THR ILE ASN PRO ARG LEU SEQRES 18 A 537 PRO LYS SER ASP GLY ASP LYS PRO ALA ILE LEU SER LEU SEQRES 19 A 537 VAL ASP LEU ILE SER PRO TRP SER ILE LEU ILE THR PHE SEQRES 20 A 537 ALA ALA LEU GLN LYS GLY TYR SER VAL LEU LEU LEU SER SEQRES 21 A 537 GLU VAL ASP ILE GLU ASN ILE THR GLU THR LEU LYS GLU SEQRES 22 A 537 THR GLN PRO ALA TRP ILE ALA GLY THR PRO SER ASN PHE SEQRES 23 A 537 HIS LYS ILE ILE LYS ASN GLU GLU ASN ASN ASN ASN SER SEQRES 24 A 537 LEU ASP LEU SER GLU THR VAL CYS VAL ALA GLY GLY ASP SEQRES 25 A 537 SER CYS ALA THR GLU LEU SER GLN LYS PHE PHE GLU CYS SEQRES 26 A 537 PHE GLY SER HIS LEU GLN SER SER TYR GLY GLN THR GLU SEQRES 27 A 537 LEU GLY GLY PRO VAL ILE TYR HIS HIS ASP ILE TYR ALA SEQRES 28 A 537 ILE ASN GLU PRO SER ILE GLY TRP PRO LEU PRO GLY VAL SEQRES 29 A 537 GLU ILE LYS ILE ASN ASN THR GLN SER SER ASN GLY GLU SEQRES 30 A 537 LEU LEU ILE ARG SER PRO ALA LYS THR ILE GLY ILE TRP SEQRES 31 A 537 ASN GLY HIS ASP ILE GLU LEU PHE PRO SER ASP ARG TRP SEQRES 32 A 537 LEU ALA THR GLY ASP LEU VAL ARG GLN GLU ASN ASN ARG SEQRES 33 A 537 ASN LEU ILE PHE LEU GLY ARG GLU LYS ASP GLN ILE LYS SEQRES 34 A 537 ILE GLU GLY TYR PRO VAL TYR PRO ILE GLU ILE GLU ASN SEQRES 35 A 537 THR LEU ILE GLN HIS ALA ASP ILE ALA ALA SER VAL VAL SEQRES 36 A 537 PHE SER VAL PRO ASP LYS TYR ALA GLY GLU ARG ILE ILE SEQRES 37 A 537 ALA LEU ILE GLN PRO GLN LYS ASN HIS SER LEU LYS ALA SEQRES 38 A 537 GLU THR ILE ALA SER TYR LEU SER ASP ASN LEU ALA HIS SEQRES 39 A 537 TYR LYS HIS PRO SER GLU TYR ILE PHE ILE LYS GLU ILE SEQRES 40 A 537 PRO VAL ASN THR THR GLY LYS ILE SER ARG ARG LYS LEU SEQRES 41 A 537 SER ASN GLU TYR HIS LEU LEU LYS SER GLN ALA GLU LYS SEQRES 42 A 537 VAL PHE THR LEU HET R4Z A 601 15 HET PO4 A 602 5 HET PO4 A 603 5 HET PO4 A 604 5 HETNAM R4Z 6-ETHYL-1-OXIDANYLIDENE-INDENE-4-CARBOXYLIC ACID HETNAM PO4 PHOSPHATE ION FORMUL 2 R4Z C12 H10 O3 FORMUL 3 PO4 3(O4 P 3-) FORMUL 6 HOH *196(H2 O) HELIX 1 AA1 ASN A 2 HIS A 14 1 13 HELIX 2 AA2 PHE A 29 ALA A 46 1 18 HELIX 3 AA3 CYS A 61 GLY A 75 1 15 HELIX 4 AA4 SER A 86 SER A 97 1 12 HELIX 5 AA5 ASP A 105 THR A 112 1 8 HELIX 6 AA6 THR A 112 SER A 118 1 7 HELIX 7 AA7 LYS A 131 LYS A 135 5 5 HELIX 8 AA8 GLU A 143 SER A 147 5 5 HELIX 9 AA9 GLN A 182 VAL A 194 1 13 HELIX 10 AB1 SER A 218 LYS A 231 1 14 HELIX 11 AB2 SER A 239 ASN A 245 1 7 HELIX 12 AB3 ASN A 245 GLN A 254 1 10 HELIX 13 AB4 THR A 261 GLU A 273 1 13 HELIX 14 AB5 ALA A 294 GLY A 306 1 13 HELIX 15 AB6 THR A 316 GLY A 319 5 4 HELIX 16 AB7 ASP A 327 ILE A 331 5 5 HELIX 17 AB8 LYS A 404 GLN A 406 5 3 HELIX 18 AB9 TYR A 415 GLN A 425 1 11 HELIX 19 AC1 LYS A 459 LEU A 471 1 13 HELIX 20 AC2 ALA A 472 HIS A 476 5 5 HELIX 21 AC3 SER A 495 GLU A 502 1 8 HELIX 22 AC4 GLU A 502 ALA A 510 1 9 SHEET 1 AA113 ASN A 26 SER A 28 0 SHEET 2 AA113 THR A 18 LYS A 21 -1 N ALA A 19 O ILE A 27 SHEET 3 AA113 SER A 234 LEU A 236 1 O VAL A 235 N LYS A 21 SHEET 4 AA113 ALA A 209 SER A 212 1 N ILE A 210 O LEU A 236 SHEET 5 AA113 TRP A 257 GLY A 260 1 O ALA A 259 N LEU A 211 SHEET 6 AA113 VAL A 285 GLY A 290 1 O GLY A 289 N GLY A 260 SHEET 7 AA113 GLN A 310 GLY A 314 1 O GLN A 310 N ALA A 288 SHEET 8 AA113 PRO A 321 HIS A 325 -1 O VAL A 322 N TYR A 313 SHEET 9 AA113 SER A 335 PRO A 339 -1 O TRP A 338 N TYR A 324 SHEET 10 AA113 LEU A 397 ARG A 402 -1 O LEU A 397 N ILE A 336 SHEET 11 AA113 LEU A 383 GLN A 391 -1 N LEU A 388 O GLY A 401 SHEET 12 AA113 GLY A 355 ARG A 360 -1 N LEU A 357 O ASP A 387 SHEET 13 AA113 GLU A 344 ASN A 348 -1 N LYS A 346 O LEU A 358 SHEET 1 AA2 5 VAL A 77 PRO A 80 0 SHEET 2 AA2 5 ARG A 53 HIS A 57 1 N ILE A 54 O VAL A 79 SHEET 3 AA2 5 ALA A 101 GLY A 104 1 O ILE A 103 N SER A 55 SHEET 4 AA2 5 LYS A 124 VAL A 127 1 O TRP A 126 N TYR A 102 SHEET 5 AA2 5 THR A 139 ASN A 141 1 O HIS A 140 N ILE A 125 SHEET 1 AA3 4 ILE A 162 PHE A 166 0 SHEET 2 AA3 4 GLY A 177 SER A 181 -1 O TYR A 180 N ALA A 163 SHEET 3 AA3 4 GLY A 367 TRP A 369 -1 O TRP A 369 N GLY A 177 SHEET 4 AA3 4 ILE A 374 LEU A 376 -1 O GLU A 375 N ILE A 368 SHEET 1 AA4 2 ILE A 407 ILE A 409 0 SHEET 2 AA4 2 TYR A 412 VAL A 414 -1 O VAL A 414 N ILE A 407 SHEET 1 AA5 4 ILE A 429 ASP A 439 0 SHEET 2 AA5 4 GLY A 443 PRO A 452 -1 O ILE A 447 N PHE A 435 SHEET 3 AA5 4 GLU A 479 PHE A 482 1 O ILE A 481 N ALA A 448 SHEET 4 AA5 4 LYS A 512 THR A 515 -1 O LYS A 512 N PHE A 482 SITE 1 AC1 13 TRP A 220 LEU A 223 GLY A 289 GLY A 290 SITE 2 AC1 13 SER A 312 TYR A 313 GLY A 314 GLN A 315 SITE 3 AC1 13 THR A 316 GLY A 319 PRO A 321 HOH A 789 SITE 4 AC1 13 HOH A 822 SITE 1 AC2 8 LYS A 107 ARG A 108 SER A 239 GLU A 240 SITE 2 AC2 8 HOH A 731 HOH A 791 HOH A 807 HOH A 853 SITE 1 AC3 2 LYS A 404 SER A 495 SITE 1 AC4 4 SER A 22 ILE A 23 ASN A 24 HIS A 25 CRYST1 77.828 115.293 70.942 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012849 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008674 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014096 0.00000