HEADER RNA BINDING PROTEIN 02-SEP-20 7A9W TITLE STRUCTURE OF YEAST RMD9P IN COMPLEX WITH 20NT TARGET RNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN RMD9, MITOCHONDRIAL; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: REQUIRED FOR MEIOTIC NUCLEAR DIVISION PROTEIN 9; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: RNA (5'-R(*AP*UP*AP*AP*AP*AP*UP*AP*AP*CP*AP*UP*UP*CP*UP*U)- COMPND 8 3'); COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE S288C; SOURCE 3 ORGANISM_TAXID: 559292; SOURCE 4 GENE: RMD9, YGL107C, G3075; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: RIPL; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 11 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 12 ORGANISM_TAXID: 4932 KEYWDS MITOCHONDRIA, TRANSLATION, TRANSCRIPTION, DEGRADATION, RIBOSOME, RNA KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.S.HILLEN,D.A.MARKOV,W.D.IRENEUSZ,K.B.HOFMANN,A.T.COWAN,J.L.JONES, AUTHOR 2 D.TEMIAKOV,P.CRAMER,M.ANIKIN REVDAT 2 05-MAY-21 7A9W 1 JRNL REVDAT 1 07-APR-21 7A9W 0 JRNL AUTH H.S.HILLEN,D.A.MARKOV,I.D.WOJTAS,K.B.HOFMANN,M.LIDSCHREIBER, JRNL AUTH 2 A.T.COWAN,J.L.JONES,D.TEMIAKOV,P.CRAMER,M.ANIKIN JRNL TITL THE PENTATRICOPEPTIDE REPEAT PROTEIN RMD9 RECOGNIZES THE JRNL TITL 2 DODECAMERIC ELEMENT IN THE 3'-UTRS OF YEAST MITOCHONDRIAL JRNL TITL 3 MRNAS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 118 2021 JRNL REFN ESSN 1091-6490 JRNL PMID 33876744 JRNL DOI 10.1073/PNAS.2009329118 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.24 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.920 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 53144 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 2667 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.2400 - 6.8000 1.00 2659 142 0.1618 0.1849 REMARK 3 2 6.8000 - 5.4000 1.00 2668 139 0.1990 0.2401 REMARK 3 3 5.4000 - 4.7200 1.00 2641 143 0.1585 0.2128 REMARK 3 4 4.7200 - 4.2900 1.00 2646 137 0.1541 0.1721 REMARK 3 5 4.2900 - 3.9800 1.00 2668 141 0.1679 0.2056 REMARK 3 6 3.9800 - 3.7400 1.00 2683 142 0.1762 0.2541 REMARK 3 7 3.7400 - 3.5600 1.00 2580 136 0.1987 0.2381 REMARK 3 8 3.5600 - 3.4000 1.00 2691 143 0.1970 0.2586 REMARK 3 9 3.4000 - 3.2700 1.00 2685 141 0.2095 0.2580 REMARK 3 10 3.2700 - 3.1600 0.99 2616 139 0.2350 0.3203 REMARK 3 11 3.1600 - 3.0600 1.00 2683 141 0.2394 0.3083 REMARK 3 12 3.0600 - 2.9700 1.00 2636 141 0.2587 0.3053 REMARK 3 13 2.9700 - 2.8900 1.00 2651 140 0.2535 0.3195 REMARK 3 14 2.8900 - 2.8200 1.00 2650 141 0.2516 0.2505 REMARK 3 15 2.8200 - 2.7600 1.00 2703 142 0.2625 0.3088 REMARK 3 16 2.7600 - 2.7000 1.00 2649 140 0.2739 0.2896 REMARK 3 17 2.7000 - 2.6500 1.00 2629 138 0.3059 0.3531 REMARK 3 18 2.6500 - 2.6000 1.00 2666 140 0.3303 0.3810 REMARK 3 19 2.6000 - 2.5500 1.00 2673 141 0.3632 0.3956 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.395 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.933 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 77.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 97.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.001 4666 REMARK 3 ANGLE : 0.378 6387 REMARK 3 CHIRALITY : 0.033 714 REMARK 3 PLANARITY : 0.003 752 REMARK 3 DIHEDRAL : 19.052 2753 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 440 THROUGH 639 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.2171 54.7942 17.3318 REMARK 3 T TENSOR REMARK 3 T11: 0.9938 T22: 1.0248 REMARK 3 T33: 0.7852 T12: 0.3259 REMARK 3 T13: 0.1258 T23: 0.0966 REMARK 3 L TENSOR REMARK 3 L11: 5.6354 L22: 1.4521 REMARK 3 L33: 3.7911 L12: 1.0832 REMARK 3 L13: 0.1281 L23: -0.9529 REMARK 3 S TENSOR REMARK 3 S11: -0.0413 S12: 0.5671 S13: -0.2634 REMARK 3 S21: -0.4039 S22: -0.2853 S23: -0.4358 REMARK 3 S31: 0.9643 S32: 1.0573 S33: -0.0021 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): -38.7596 85.6561 11.8537 REMARK 3 T TENSOR REMARK 3 T11: 1.3012 T22: 1.6849 REMARK 3 T33: 1.6427 T12: 0.2475 REMARK 3 T13: 0.0605 T23: -0.0286 REMARK 3 L TENSOR REMARK 3 L11: 0.2599 L22: 0.1534 REMARK 3 L33: 0.5517 L12: -0.1986 REMARK 3 L13: 0.0778 L23: -0.0898 REMARK 3 S TENSOR REMARK 3 S11: 0.0075 S12: 2.0845 S13: 0.5731 REMARK 3 S21: -0.2598 S22: -0.5653 S23: 0.7372 REMARK 3 S31: -2.6854 S32: -3.5868 S33: 0.0019 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 6 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.7755 67.9202 17.8356 REMARK 3 T TENSOR REMARK 3 T11: 0.7947 T22: 0.8080 REMARK 3 T33: 0.8341 T12: -0.0099 REMARK 3 T13: 0.0232 T23: 0.0950 REMARK 3 L TENSOR REMARK 3 L11: 0.9007 L22: 1.1019 REMARK 3 L33: 0.9261 L12: -0.9942 REMARK 3 L13: -0.1589 L23: 0.1044 REMARK 3 S TENSOR REMARK 3 S11: 0.0445 S12: -0.1989 S13: 0.6273 REMARK 3 S21: -0.0069 S22: -0.1408 S23: -0.1678 REMARK 3 S31: 0.1938 S32: 0.2278 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 80 THROUGH 303 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.4462 83.7015 12.6894 REMARK 3 T TENSOR REMARK 3 T11: 0.8889 T22: 0.6455 REMARK 3 T33: 1.0715 T12: -0.0670 REMARK 3 T13: 0.1469 T23: -0.0649 REMARK 3 L TENSOR REMARK 3 L11: 3.9665 L22: 2.1979 REMARK 3 L33: 3.6854 L12: -1.2202 REMARK 3 L13: -0.9733 L23: 0.3906 REMARK 3 S TENSOR REMARK 3 S11: 0.4953 S12: 0.0865 S13: 1.0533 REMARK 3 S21: -0.2880 S22: -0.1310 S23: -0.1633 REMARK 3 S31: -0.6166 S32: 0.0975 S33: 0.0043 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 304 THROUGH 439 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.1529 62.3770 31.5923 REMARK 3 T TENSOR REMARK 3 T11: 0.7620 T22: 0.8276 REMARK 3 T33: 0.6933 T12: -0.0960 REMARK 3 T13: 0.0367 T23: -0.0335 REMARK 3 L TENSOR REMARK 3 L11: 2.9447 L22: 3.6131 REMARK 3 L33: 2.0754 L12: -2.3592 REMARK 3 L13: 1.3228 L23: -1.3057 REMARK 3 S TENSOR REMARK 3 S11: -0.1044 S12: -0.4236 S13: -0.0488 REMARK 3 S21: 0.2421 S22: 0.1338 S23: 0.3195 REMARK 3 S31: 0.2384 S32: -0.3812 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7A9W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-SEP-20. REMARK 100 THE DEPOSITION ID IS D_1292111055. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53148 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 49.240 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.80 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.1600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 10.60 REMARK 200 R MERGE FOR SHELL (I) : 3.00100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.870 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: XDS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NA-CACODYLATE, NACL, LISO4, CAACETATE, REMARK 280 MGCL2, PEG8000, PH 6.5, VAPOR DIFFUSION, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.72000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 85.44000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 85.44000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 42.72000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 44 REMARK 465 SER A 45 REMARK 465 HIS A 46 REMARK 465 HIS A 47 REMARK 465 HIS A 48 REMARK 465 HIS A 49 REMARK 465 HIS A 50 REMARK 465 HIS A 51 REMARK 465 LYS A 52 REMARK 465 ASN A 53 REMARK 465 VAL A 54 REMARK 465 PRO A 55 REMARK 465 LYS A 56 REMARK 465 GLY A 57 REMARK 465 VAL A 58 REMARK 465 LEU A 59 REMARK 465 ASP A 60 REMARK 465 LYS A 61 REMARK 465 LYS A 62 REMARK 465 ASN A 63 REMARK 465 GLY A 64 REMARK 465 ARG A 65 REMARK 465 GLU A 66 REMARK 465 GLN A 67 REMARK 465 ARG A 68 REMARK 465 LYS A 69 REMARK 465 THR A 70 REMARK 465 GLU A 71 REMARK 465 GLN A 72 REMARK 465 ASN A 73 REMARK 465 VAL A 74 REMARK 465 PHE A 75 REMARK 465 ASN A 76 REMARK 465 VAL A 77 REMARK 465 ASP A 78 REMARK 465 PRO A 79 REMARK 465 LEU A 105 REMARK 465 GLN A 106 REMARK 465 ASN A 107 REMARK 465 THR A 108 REMARK 465 TYR A 109 REMARK 465 LYS A 110 REMARK 465 ARG A 111 REMARK 465 ILE A 112 REMARK 465 GLY A 113 REMARK 465 ASN A 114 REMARK 465 ASN A 115 REMARK 465 GLN A 116 REMARK 465 LEU A 117 REMARK 465 ASN A 118 REMARK 465 LYS A 547 REMARK 465 ALA A 548 REMARK 465 LYS A 549 REMARK 465 GLY A 550 REMARK 465 THR A 551 REMARK 465 PRO A 552 REMARK 465 ALA A 553 REMARK 465 THR A 554 REMARK 465 THR A 555 REMARK 465 THR A 556 REMARK 465 THR A 557 REMARK 465 THR A 558 REMARK 465 GLU A 559 REMARK 465 ASP A 560 REMARK 465 ASP A 561 REMARK 465 ILE A 562 REMARK 465 LYS A 563 REMARK 465 VAL A 564 REMARK 465 PRO A 565 REMARK 465 LYS A 566 REMARK 465 PRO A 567 REMARK 465 LEU A 568 REMARK 465 GLU A 569 REMARK 465 ASN A 570 REMARK 465 LEU A 571 REMARK 465 LYS A 572 REMARK 465 ASN A 573 REMARK 465 GLU A 574 REMARK 465 ASP A 575 REMARK 465 SER A 576 REMARK 465 THR A 577 REMARK 465 SER A 578 REMARK 465 ASN A 579 REMARK 465 SER A 640 REMARK 465 PHE A 641 REMARK 465 ILE A 642 REMARK 465 ALA A 643 REMARK 465 LYS A 644 REMARK 465 GLU A 645 REMARK 465 GLN A 646 REMARK 465 A B 17 REMARK 465 A B 18 REMARK 465 U B 19 REMARK 465 U B 20 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 627 CG OD1 OD2 REMARK 470 LEU A 628 CG CD1 CD2 REMARK 470 SER A 629 OG REMARK 470 GLU A 631 CG CD OE1 OE2 REMARK 470 ASP A 632 CG OD1 OD2 REMARK 470 ILE A 633 CG1 CG2 CD1 REMARK 470 VAL A 635 CG1 CG2 REMARK 470 GLN A 637 CG CD OE1 NE2 REMARK 470 LEU A 638 CG CD1 CD2 REMARK 470 HIS A 639 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 83 51.98 -144.74 REMARK 500 PHE A 226 56.00 -118.72 REMARK 500 ARG A 267 17.89 56.74 REMARK 500 TYR A 418 38.53 -94.64 REMARK 500 THR A 531 -70.51 -130.91 REMARK 500 THR A 608 -81.43 -133.95 REMARK 500 GLU A 631 37.49 -153.22 REMARK 500 ASP A 632 -164.04 -77.39 REMARK 500 GLN A 637 122.98 -171.10 REMARK 500 REMARK 500 REMARK: NULL DBREF 7A9W A 51 646 UNP P53140 RMD9_YEAST 51 646 DBREF 7A9W B 1 20 PDB 7A9W 7A9W 1 20 SEQADV 7A9W MET A 44 UNP P53140 INITIATING METHIONINE SEQADV 7A9W SER A 45 UNP P53140 EXPRESSION TAG SEQADV 7A9W HIS A 46 UNP P53140 EXPRESSION TAG SEQADV 7A9W HIS A 47 UNP P53140 EXPRESSION TAG SEQADV 7A9W HIS A 48 UNP P53140 EXPRESSION TAG SEQADV 7A9W HIS A 49 UNP P53140 EXPRESSION TAG SEQADV 7A9W HIS A 50 UNP P53140 EXPRESSION TAG SEQRES 1 A 603 MET SER HIS HIS HIS HIS HIS HIS LYS ASN VAL PRO LYS SEQRES 2 A 603 GLY VAL LEU ASP LYS LYS ASN GLY ARG GLU GLN ARG LYS SEQRES 3 A 603 THR GLU GLN ASN VAL PHE ASN VAL ASP PRO ALA SER PRO SEQRES 4 A 603 TRP ARG HIS GLU LEU LEU SER PHE ASP GLU CYS VAL SER SEQRES 5 A 603 SER ALA LEU LYS TYR SER THR THR PRO LEU GLN ASN THR SEQRES 6 A 603 TYR LYS ARG ILE GLY ASN ASN GLN LEU ASN LYS ASN PRO SEQRES 7 A 603 SER PHE ALA MET PHE TRP ASP SER MET GLY ARG ALA MET SEQRES 8 A 603 GLU LEU TYR TYR SER LEU ARG GLU SER PRO ASP PHE ASN SEQRES 9 A 603 ALA TYR ARG VAL SER ARG LEU ILE HIS LEU LEU HIS ASN SEQRES 10 A 603 GLY LEU ARG SER THR ARG ASP GLN LEU VAL LYS LEU SER SEQRES 11 A 603 ARG LYS PRO ASP TYR ASP SER GLN SER PHE HIS LYS GLU SEQRES 12 A 603 MET MET ASN PHE LEU CAS ASN SER LEU LYS ASP ILE SER SEQRES 13 A 603 ASP ASP ILE LEU ILE GLY LYS VAL SER VAL SER GLY TYR SEQRES 14 A 603 GLY ALA THR HIS LEU LEU THR SER PHE LYS GLU LEU SER SEQRES 15 A 603 PHE ASP ASP ASP CYS ILE ARG ILE TRP GLU ALA SER LYS SEQRES 16 A 603 ASN LEU SER ASP GLU THR THR SER GLN ALA PHE GLN GLU SEQRES 17 A 603 PRO LYS VAL VAL GLY PHE MET LEU PRO LEU LEU TYR ALA SEQRES 18 A 603 LYS THR ARG SER LEU THR GLU PRO ASN GLU LEU TYR ASN SEQRES 19 A 603 GLN ILE ILE GLN SER LYS GLU PHE ILE HIS PRO ASN LEU SEQRES 20 A 603 TYR SER GLY LEU ILE LYS VAL PHE ILE LYS ALA GLU ASP SEQRES 21 A 603 TYR GLU LYS ALA LEU SER LEU PHE GLY GLN LEU CAS GLU SEQRES 22 A 603 LYS ALA GLU VAL ARG ASN TYR GLY TYR LEU ILE GLU THR SEQRES 23 A 603 HIS LEU SER PHE ILE GLY ASP SER LYS ASN LEU THR LEU SEQRES 24 A 603 ALA GLU SER PHE PHE ASP LYS ILE ILE ASN ASP GLU MET SEQRES 25 A 603 PRO TYR LYS ILE ILE LEU GLN VAL SER THR VAL ASN SER SEQRES 26 A 603 PHE LEU GLN ASN ILE TRP LYS ALA GLN ASN ASP PHE ASP SEQRES 27 A 603 HIS VAL TYR ARG ILE TRP GLU LYS ALA VAL LYS PHE TYR SEQRES 28 A 603 GLY ASN THR VAL ASN PRO GLY ILE LEU SER SER LEU ASN SEQRES 29 A 603 ASN THR PHE PHE THR ILE PHE PHE GLU ASN TYR ILE ASN SEQRES 30 A 603 ASP ASN ILE ASN GLY PHE ARG LYS LEU GLN GLU ILE ILE SEQRES 31 A 603 THR PHE TYR SER GLY VAL LYS LYS ILE ASP GLU PRO PHE SEQRES 32 A 603 PHE ASN VAL MET LEU THR ARG ALA SER ILE TRP HIS GLU SEQRES 33 A 603 ARG SER ILE ILE ASP PHE ILE ASP LYS ASN TYR THR LEU SEQRES 34 A 603 TYR HIS ILE PRO ARG THR ILE ILE SER TYR ARG ILE LEU SEQRES 35 A 603 LEU LYS SER LEU GLY SER ILE ASP ASN THR ASN ASN GLU SEQRES 36 A 603 GLU ILE LEU ASP ARG TRP LEU GLU LEU VAL LYS LYS LEU SEQRES 37 A 603 ASN GLU LEU GLY GLN GLN TYR ILE ALA ASN ALA ASP LEU SEQRES 38 A 603 SER ALA LEU ARG ASP ALA THR VAL VAL TRP SER GLN SER SEQRES 39 A 603 LYS ARG ASP GLU LYS VAL PHE SER ALA LYS ALA LYS GLY SEQRES 40 A 603 THR PRO ALA THR THR THR THR THR GLU ASP ASP ILE LYS SEQRES 41 A 603 VAL PRO LYS PRO LEU GLU ASN LEU LYS ASN GLU ASP SER SEQRES 42 A 603 THR SER ASN SER GLU ASP ARG ILE GLU LEU TYR LEU LYS SEQRES 43 A 603 ILE LEU LYS ARG TYR THR PRO TYR PHE ARG ALA THR LYS SEQRES 44 A 603 GLN VAL TYR ARG TYR THR THR GLY CYS ALA GLU SER TYR SEQRES 45 A 603 PRO ILE LEU ASN GLU TYR LEU SER GLY TYR SER ASP LEU SEQRES 46 A 603 SER ALA GLU ASP ILE PRO VAL PRO GLN LEU HIS SER PHE SEQRES 47 A 603 ILE ALA LYS GLU GLN SEQRES 1 B 20 A U A A A A U A A C A U U SEQRES 2 B 20 C U U A A U U MODRES 7A9W CAS A 192 CYS MODIFIED RESIDUE MODRES 7A9W CAS A 315 CYS MODIFIED RESIDUE HET CAS A 192 9 HET CAS A 315 9 HET CL A 701 1 HETNAM CAS S-(DIMETHYLARSENIC)CYSTEINE HETNAM CL CHLORIDE ION FORMUL 1 CAS 2(C5 H12 AS N O2 S) FORMUL 3 CL CL 1- FORMUL 4 HOH *65(H2 O) HELIX 1 AA1 TRP A 83 THR A 103 1 21 HELIX 2 AA2 ASN A 120 ARG A 141 1 22 HELIX 3 AA3 ASN A 147 LEU A 172 1 26 HELIX 4 AA4 SER A 182 GLY A 205 1 24 HELIX 5 AA5 SER A 210 LEU A 224 1 15 HELIX 6 AA6 PHE A 226 ASN A 239 1 14 HELIX 7 AA7 ASP A 242 PHE A 249 1 8 HELIX 8 AA8 GLU A 251 ARG A 267 1 17 HELIX 9 AA9 LEU A 269 SER A 282 1 14 HELIX 10 AB1 HIS A 287 ALA A 301 1 15 HELIX 11 AB2 ASP A 303 ALA A 318 1 16 HELIX 12 AB3 GLU A 319 ASN A 322 5 4 HELIX 13 AB4 TYR A 323 ASP A 336 1 14 HELIX 14 AB5 ASN A 339 ASN A 352 1 14 HELIX 15 AB6 GLN A 362 ASN A 378 1 17 HELIX 16 AB7 ASP A 379 GLY A 395 1 17 HELIX 17 AB8 ASN A 399 TYR A 418 1 20 HELIX 18 AB9 ASP A 421 LYS A 440 1 20 HELIX 19 AC1 ASP A 443 ALA A 454 1 12 HELIX 20 AC2 SER A 455 HIS A 458 5 4 HELIX 21 AC3 GLU A 459 TYR A 473 1 15 HELIX 22 AC4 THR A 478 SER A 488 1 11 HELIX 23 AC5 LEU A 489 ILE A 492 5 4 HELIX 24 AC6 ASN A 496 LEU A 514 1 19 HELIX 25 AC7 ALA A 520 ALA A 530 1 11 HELIX 26 AC8 THR A 531 ALA A 546 1 16 HELIX 27 AC9 ASP A 582 TYR A 594 1 13 HELIX 28 AD1 THR A 595 PHE A 598 5 4 HELIX 29 AD2 THR A 601 TYR A 607 1 7 HELIX 30 AD3 THR A 608 TYR A 615 1 8 HELIX 31 AD4 PRO A 616 TYR A 621 5 6 LINK C LEU A 191 N CAS A 192 1555 1555 1.33 LINK C CAS A 192 N ASN A 193 1555 1555 1.33 LINK C LEU A 314 N CAS A 315 1555 1555 1.33 LINK C CAS A 315 N GLU A 316 1555 1555 1.33 CRYST1 106.670 106.670 128.160 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009375 0.005412 0.000000 0.00000 SCALE2 0.000000 0.010825 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007803 0.00000