HEADER TRANSFERASE 04-SEP-20 7AAK TITLE HUMAN PORPHOBILINOGEN DEAMINASE R173W MUTANT CRYSTALLIZED IN THE ES2 TITLE 2 INTERMEDIATE STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PORPHOBILINOGEN DEAMINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PBG-D,HYDROXYMETHYLBILANE SYNTHASE,HMBS,PRE-UROPORPHYRINOGEN COMPND 5 SYNTHASE; COMPND 6 EC: 2.5.1.61; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: -AMINO ACIDS 1-2 (GS) IN THE SAMPLE SEQUENCE DERIVE COMPND 9 FROM EXPRESSION TAG AND BIOLOGICAL SEQUENCE STARTS FROM 3 -LIGAND IS COMPND 10 COVALENTLY BOUND TO CYS261 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HMBS, PBGD, UPS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PBG-D, HYDROXYMETHYLBILANE SYNTHASE, HMBS, PORPHOBILINOGEN DEAMINASE, KEYWDS 2 HEME BIOSYNTHESIS, PORPHYRIA, ACUTE INTERMITTENT PORPHYRIA, ES2, KEYWDS 3 REACTION INTERMEDIATE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.P.KALLIO,H.J.BUSTAD,A.MARTINEZ REVDAT 3 01-MAY-24 7AAK 1 REMARK REVDAT 2 17-MAR-21 7AAK 1 JRNL REVDAT 1 17-FEB-21 7AAK 0 JRNL AUTH H.J.BUSTAD,J.P.KALLIO,M.LAITAOJA,K.TOSKA,I.KURSULA, JRNL AUTH 2 A.MARTINEZ,J.JANIS JRNL TITL CHARACTERIZATION OF PORPHOBILINOGEN DEAMINASE MUTANTS JRNL TITL 2 REVEALS THAT ARGININE-173 IS CRUCIAL FOR POLYPYRROLE JRNL TITL 3 ELONGATION MECHANISM. JRNL REF ISCIENCE V. 24 02152 2021 JRNL REFN ESSN 2589-0042 JRNL PMID 33665570 JRNL DOI 10.1016/J.ISCI.2021.102152 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.J.BUSTAD,J.P.KALLIO,M.LAITAOJA,K.TOSKA,I.KURSULA, REMARK 1 AUTH 2 A.MARTINEZ,J.JANIS REMARK 1 TITL STRUCTURAL CHARACTERIZATION OF HYDROXYMETHYLBILANE SYNTHASE REMARK 1 TITL 2 MUTANTS ASSOCIATED WITH ACUTE INTERMITTENT PORPHYRIA REVEALS REMARK 1 TITL 3 THAT ARG173 IS CRUCIAL FOR THE ELONGATION MECHANISM REMARK 1 REF ISCIENCE 2021 REMARK 1 REFN ESSN 2589-0042 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 82992 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.850 REMARK 3 FREE R VALUE TEST SET COUNT : 4022 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 59.1000 - 5.2200 1.00 2964 136 0.1786 0.2070 REMARK 3 2 5.2200 - 4.1500 0.99 2807 131 0.1402 0.1587 REMARK 3 3 4.1400 - 3.6200 1.00 2767 155 0.1457 0.1749 REMARK 3 4 3.6200 - 3.2900 1.00 2780 127 0.1636 0.1906 REMARK 3 5 3.2900 - 3.0500 1.00 2754 152 0.1705 0.1973 REMARK 3 6 3.0500 - 2.8700 1.00 2750 142 0.1716 0.2275 REMARK 3 7 2.8700 - 2.7300 1.00 2756 136 0.1770 0.2058 REMARK 3 8 2.7300 - 2.6100 1.00 2729 121 0.1736 0.1913 REMARK 3 9 2.6100 - 2.5100 1.00 2725 164 0.1770 0.1998 REMARK 3 10 2.5100 - 2.4200 0.99 2696 147 0.1805 0.1970 REMARK 3 11 2.4200 - 2.3500 1.00 2713 137 0.1883 0.2238 REMARK 3 12 2.3500 - 2.2800 1.00 2743 122 0.1890 0.1953 REMARK 3 13 2.2800 - 2.2200 0.99 2720 138 0.1768 0.1998 REMARK 3 14 2.2200 - 2.1700 1.00 2715 128 0.1810 0.2446 REMARK 3 15 2.1700 - 2.1200 1.00 2708 142 0.1928 0.2211 REMARK 3 16 2.1200 - 2.0700 1.00 2691 144 0.2035 0.2355 REMARK 3 17 2.0700 - 2.0300 1.00 2712 143 0.2067 0.2271 REMARK 3 18 2.0300 - 1.9900 1.00 2714 140 0.2110 0.2823 REMARK 3 19 1.9900 - 1.9600 1.00 2710 123 0.2157 0.2655 REMARK 3 20 1.9600 - 1.9200 1.00 2706 130 0.2190 0.2653 REMARK 3 21 1.9200 - 1.8900 0.99 2698 162 0.2310 0.2653 REMARK 3 22 1.8900 - 1.8600 0.99 2659 139 0.2400 0.3165 REMARK 3 23 1.8600 - 1.8400 0.99 2641 145 0.2558 0.3049 REMARK 3 24 1.8400 - 1.8100 1.00 2727 128 0.2642 0.2936 REMARK 3 25 1.8100 - 1.7900 0.99 2684 143 0.3021 0.3095 REMARK 3 26 1.7900 - 1.7600 0.99 2645 134 0.3330 0.3945 REMARK 3 27 1.7600 - 1.7400 0.99 2699 133 0.3324 0.3414 REMARK 3 28 1.7400 - 1.7200 0.99 2645 143 0.3399 0.3545 REMARK 3 29 1.7200 - 1.7000 1.00 2712 137 0.3582 0.3591 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.232 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.538 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.41 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5515 REMARK 3 ANGLE : 0.881 7486 REMARK 3 CHIRALITY : 0.058 842 REMARK 3 PLANARITY : 0.005 979 REMARK 3 DIHEDRAL : 23.990 2126 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 17 THROUGH 361) REMARK 3 ORIGIN FOR THE GROUP (A): 94.2568 35.7343 5.6189 REMARK 3 T TENSOR REMARK 3 T11: 0.1792 T22: 0.0803 REMARK 3 T33: 0.1557 T12: 0.0165 REMARK 3 T13: 0.0093 T23: -0.0078 REMARK 3 L TENSOR REMARK 3 L11: 2.4051 L22: 0.3004 REMARK 3 L33: 1.4289 L12: 0.3329 REMARK 3 L13: 0.1306 L23: -0.0500 REMARK 3 S TENSOR REMARK 3 S11: -0.0103 S12: -0.0351 S13: -0.0769 REMARK 3 S21: 0.0096 S22: 0.0056 S23: -0.0098 REMARK 3 S31: 0.1076 S32: 0.0084 S33: 0.0008 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 18 THROUGH 358) REMARK 3 ORIGIN FOR THE GROUP (A): 93.8659 75.9242 18.2783 REMARK 3 T TENSOR REMARK 3 T11: 0.1810 T22: 0.1677 REMARK 3 T33: 0.2102 T12: 0.0368 REMARK 3 T13: 0.0289 T23: 0.0548 REMARK 3 L TENSOR REMARK 3 L11: 1.7392 L22: 0.5931 REMARK 3 L33: 2.2825 L12: 0.1104 REMARK 3 L13: -0.3933 L23: -0.0643 REMARK 3 S TENSOR REMARK 3 S11: -0.0376 S12: -0.1063 S13: -0.1299 REMARK 3 S21: 0.0001 S22: -0.0687 S23: -0.1210 REMARK 3 S31: 0.2161 S32: 0.3072 S33: 0.0896 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7AAK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-SEP-20. REMARK 100 THE DEPOSITION ID IS D_1292108033. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9762 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 83105 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 59.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.4800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 1.56000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.620 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 1.17.1_3660 REMARK 200 STARTING MODEL: D_1292107576 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: POLYETHYLENE GLYCOL 3350, AMMONIUM REMARK 280 CITRATE, PH 5.1, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 40.62050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.69500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.06350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.69500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.62050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.06350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLY A 3 REMARK 465 ASN A 4 REMARK 465 GLY A 5 REMARK 465 ASN A 6 REMARK 465 ALA A 7 REMARK 465 ALA A 8 REMARK 465 ALA A 9 REMARK 465 THR A 10 REMARK 465 ALA A 11 REMARK 465 GLU A 12 REMARK 465 GLU A 13 REMARK 465 ASN A 14 REMARK 465 SER A 15 REMARK 465 PRO A 16 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLY B 3 REMARK 465 ASN B 4 REMARK 465 GLY B 5 REMARK 465 ASN B 6 REMARK 465 ALA B 7 REMARK 465 ALA B 8 REMARK 465 ALA B 9 REMARK 465 THR B 10 REMARK 465 ALA B 11 REMARK 465 GLU B 12 REMARK 465 GLU B 13 REMARK 465 ASN B 14 REMARK 465 SER B 15 REMARK 465 PRO B 16 REMARK 465 LYS B 17 REMARK 465 SER B 57 REMARK 465 THR B 58 REMARK 465 THR B 59 REMARK 465 GLY B 60 REMARK 465 ASP B 61 REMARK 465 LYS B 62 REMARK 465 ILE B 63 REMARK 465 LEU B 64 REMARK 465 ASP B 65 REMARK 465 THR B 66 REMARK 465 ALA B 67 REMARK 465 LEU B 68 REMARK 465 SER B 69 REMARK 465 LYS B 70 REMARK 465 ILE B 71 REMARK 465 GLY B 72 REMARK 465 GLU B 73 REMARK 465 ASP B 359 REMARK 465 ALA B 360 REMARK 465 HIS B 361 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HIS A 300 O HOH A 501 2.06 REMARK 500 OG SER B 28 O HOH B 501 2.13 REMARK 500 O HOH B 592 O HOH B 724 2.17 REMARK 500 O HOH A 552 O HOH A 565 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 211 108.72 -164.93 REMARK 500 SER A 262 -30.04 81.53 REMARK 500 VAL A 316 52.89 34.73 REMARK 500 CYS B 211 111.80 -166.33 REMARK 500 SER B 262 -20.97 86.00 REMARK 500 VAL B 316 51.06 36.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 777 DISTANCE = 5.92 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7AAJ RELATED DB: PDB DBREF 7AAK A 1 361 UNP P08397 HEM3_HUMAN 1 361 DBREF 7AAK B 1 361 UNP P08397 HEM3_HUMAN 1 361 SEQADV 7AAK GLY A -1 UNP P08397 EXPRESSION TAG SEQADV 7AAK SER A 0 UNP P08397 EXPRESSION TAG SEQADV 7AAK TRP A 173 UNP P08397 ARG 173 ENGINEERED MUTATION SEQADV 7AAK GLY B -1 UNP P08397 EXPRESSION TAG SEQADV 7AAK SER B 0 UNP P08397 EXPRESSION TAG SEQADV 7AAK TRP B 173 UNP P08397 ARG 173 ENGINEERED MUTATION SEQRES 1 A 363 GLY SER MET SER GLY ASN GLY ASN ALA ALA ALA THR ALA SEQRES 2 A 363 GLU GLU ASN SER PRO LYS MET ARG VAL ILE ARG VAL GLY SEQRES 3 A 363 THR ARG LYS SER GLN LEU ALA ARG ILE GLN THR ASP SER SEQRES 4 A 363 VAL VAL ALA THR LEU LYS ALA SER TYR PRO GLY LEU GLN SEQRES 5 A 363 PHE GLU ILE ILE ALA MET SER THR THR GLY ASP LYS ILE SEQRES 6 A 363 LEU ASP THR ALA LEU SER LYS ILE GLY GLU LYS SER LEU SEQRES 7 A 363 PHE THR LYS GLU LEU GLU HIS ALA LEU GLU LYS ASN GLU SEQRES 8 A 363 VAL ASP LEU VAL VAL HIS SER LEU LYS ASP LEU PRO THR SEQRES 9 A 363 VAL LEU PRO PRO GLY PHE THR ILE GLY ALA ILE CYS LYS SEQRES 10 A 363 ARG GLU ASN PRO HIS ASP ALA VAL VAL PHE HIS PRO LYS SEQRES 11 A 363 PHE VAL GLY LYS THR LEU GLU THR LEU PRO GLU LYS SER SEQRES 12 A 363 VAL VAL GLY THR SER SER LEU ARG ARG ALA ALA GLN LEU SEQRES 13 A 363 GLN ARG LYS PHE PRO HIS LEU GLU PHE ARG SER ILE ARG SEQRES 14 A 363 GLY ASN LEU ASN THR TRP LEU ARG LYS LEU ASP GLU GLN SEQRES 15 A 363 GLN GLU PHE SER ALA ILE ILE LEU ALA THR ALA GLY LEU SEQRES 16 A 363 GLN ARG MET GLY TRP HIS ASN ARG VAL GLY GLN ILE LEU SEQRES 17 A 363 HIS PRO GLU GLU CYS MET TYR ALA VAL GLY GLN GLY ALA SEQRES 18 A 363 LEU GLY VAL GLU VAL ARG ALA LYS ASP GLN ASP ILE LEU SEQRES 19 A 363 ASP LEU VAL GLY VAL LEU HIS ASP PRO GLU THR LEU LEU SEQRES 20 A 363 ARG CYS ILE ALA GLU ARG ALA PHE LEU ARG HIS LEU GLU SEQRES 21 A 363 GLY GLY CYS SER VAL PRO VAL ALA VAL HIS THR ALA MET SEQRES 22 A 363 LYS ASP GLY GLN LEU TYR LEU THR GLY GLY VAL TRP SER SEQRES 23 A 363 LEU ASP GLY SER ASP SER ILE GLN GLU THR MET GLN ALA SEQRES 24 A 363 THR ILE HIS VAL PRO ALA GLN HIS GLU ASP GLY PRO GLU SEQRES 25 A 363 ASP ASP PRO GLN LEU VAL GLY ILE THR ALA ARG ASN ILE SEQRES 26 A 363 PRO ARG GLY PRO GLN LEU ALA ALA GLN ASN LEU GLY ILE SEQRES 27 A 363 SER LEU ALA ASN LEU LEU LEU SER LYS GLY ALA LYS ASN SEQRES 28 A 363 ILE LEU ASP VAL ALA ARG GLN LEU ASN ASP ALA HIS SEQRES 1 B 363 GLY SER MET SER GLY ASN GLY ASN ALA ALA ALA THR ALA SEQRES 2 B 363 GLU GLU ASN SER PRO LYS MET ARG VAL ILE ARG VAL GLY SEQRES 3 B 363 THR ARG LYS SER GLN LEU ALA ARG ILE GLN THR ASP SER SEQRES 4 B 363 VAL VAL ALA THR LEU LYS ALA SER TYR PRO GLY LEU GLN SEQRES 5 B 363 PHE GLU ILE ILE ALA MET SER THR THR GLY ASP LYS ILE SEQRES 6 B 363 LEU ASP THR ALA LEU SER LYS ILE GLY GLU LYS SER LEU SEQRES 7 B 363 PHE THR LYS GLU LEU GLU HIS ALA LEU GLU LYS ASN GLU SEQRES 8 B 363 VAL ASP LEU VAL VAL HIS SER LEU LYS ASP LEU PRO THR SEQRES 9 B 363 VAL LEU PRO PRO GLY PHE THR ILE GLY ALA ILE CYS LYS SEQRES 10 B 363 ARG GLU ASN PRO HIS ASP ALA VAL VAL PHE HIS PRO LYS SEQRES 11 B 363 PHE VAL GLY LYS THR LEU GLU THR LEU PRO GLU LYS SER SEQRES 12 B 363 VAL VAL GLY THR SER SER LEU ARG ARG ALA ALA GLN LEU SEQRES 13 B 363 GLN ARG LYS PHE PRO HIS LEU GLU PHE ARG SER ILE ARG SEQRES 14 B 363 GLY ASN LEU ASN THR TRP LEU ARG LYS LEU ASP GLU GLN SEQRES 15 B 363 GLN GLU PHE SER ALA ILE ILE LEU ALA THR ALA GLY LEU SEQRES 16 B 363 GLN ARG MET GLY TRP HIS ASN ARG VAL GLY GLN ILE LEU SEQRES 17 B 363 HIS PRO GLU GLU CYS MET TYR ALA VAL GLY GLN GLY ALA SEQRES 18 B 363 LEU GLY VAL GLU VAL ARG ALA LYS ASP GLN ASP ILE LEU SEQRES 19 B 363 ASP LEU VAL GLY VAL LEU HIS ASP PRO GLU THR LEU LEU SEQRES 20 B 363 ARG CYS ILE ALA GLU ARG ALA PHE LEU ARG HIS LEU GLU SEQRES 21 B 363 GLY GLY CYS SER VAL PRO VAL ALA VAL HIS THR ALA MET SEQRES 22 B 363 LYS ASP GLY GLN LEU TYR LEU THR GLY GLY VAL TRP SER SEQRES 23 B 363 LEU ASP GLY SER ASP SER ILE GLN GLU THR MET GLN ALA SEQRES 24 B 363 THR ILE HIS VAL PRO ALA GLN HIS GLU ASP GLY PRO GLU SEQRES 25 B 363 ASP ASP PRO GLN LEU VAL GLY ILE THR ALA ARG ASN ILE SEQRES 26 B 363 PRO ARG GLY PRO GLN LEU ALA ALA GLN ASN LEU GLY ILE SEQRES 27 B 363 SER LEU ALA ASN LEU LEU LEU SER LYS GLY ALA LYS ASN SEQRES 28 B 363 ILE LEU ASP VAL ALA ARG GLN LEU ASN ASP ALA HIS HET 7J8 A 401 60 HET GOL A 402 6 HET GOL A 403 6 HET 7J8 B 401 60 HET GOL B 402 6 HET GOL B 403 6 HETNAM 7J8 3-[4-(2-HYDROXY-2-OXOETHYL)-5-[[4-(2-HYDROXY-2- HETNAM 2 7J8 OXOETHYL)-5-[[4-(2-HYDROXY-2-OXOETHYL)-5-[[4-(2- HETNAM 3 7J8 HYDROXY-2-OXOETHYL)-3-(3-HYDROXY-3-OXOPROPYL)-5- HETNAM 4 7J8 METHYL-1~{H}-PYRROL-2-YL]METHYL]-3-(3-HYDROXY-3- HETNAM 5 7J8 OXOPROPYL)-1~{H}-PYRROL-2-YL]METHYL]-3-(3-HYDROXY-3- HETNAM 6 7J8 OXOPROPYL)-1~{H}-PYRROL-2-YL]METHYL]-1~{H}-PYRROL-3- HETNAM 7 7J8 YL]PROPANOIC ACID HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 7J8 2(C40 H46 N4 O16) FORMUL 4 GOL 4(C3 H8 O3) FORMUL 9 HOH *505(H2 O) HELIX 1 AA1 SER A 28 TYR A 46 1 19 HELIX 2 AA2 GLY A 60 ALA A 67 1 8 HELIX 3 AA3 GLY A 72 LYS A 87 1 16 HELIX 4 AA4 LYS A 98 LEU A 100 5 3 HELIX 5 AA5 PRO A 127 VAL A 130 5 4 HELIX 6 AA6 THR A 133 LEU A 137 5 5 HELIX 7 AA7 SER A 147 PHE A 158 1 12 HELIX 8 AA8 ASN A 169 GLN A 180 1 12 HELIX 9 AA9 THR A 190 MET A 196 1 7 HELIX 10 AB1 TRP A 198 VAL A 202 5 5 HELIX 11 AB2 ASP A 228 GLY A 236 1 9 HELIX 12 AB3 VAL A 237 HIS A 239 5 3 HELIX 13 AB4 ASP A 240 GLU A 258 1 19 HELIX 14 AB5 PRO A 324 LYS A 345 1 22 HELIX 15 AB6 GLY A 346 ASP A 359 1 14 HELIX 16 AB7 SER B 28 TYR B 46 1 19 HELIX 17 AB8 LEU B 76 LYS B 87 1 12 HELIX 18 AB9 LYS B 98 LEU B 100 5 3 HELIX 19 AC1 PRO B 127 VAL B 130 5 4 HELIX 20 AC2 THR B 133 LEU B 137 5 5 HELIX 21 AC3 SER B 147 PHE B 158 1 12 HELIX 22 AC4 ASN B 169 LEU B 177 1 9 HELIX 23 AC5 ASP B 178 GLN B 180 5 3 HELIX 24 AC6 THR B 190 GLY B 197 1 8 HELIX 25 AC7 TRP B 198 VAL B 202 5 5 HELIX 26 AC8 ASP B 228 GLY B 236 1 9 HELIX 27 AC9 VAL B 237 HIS B 239 5 3 HELIX 28 AD1 ASP B 240 GLU B 258 1 19 HELIX 29 AD2 PRO B 324 LYS B 345 1 22 HELIX 30 AD3 GLY B 346 ASN B 358 1 13 SHEET 1 AA1 5 PHE A 51 ALA A 55 0 SHEET 2 AA1 5 ILE A 21 THR A 25 1 N VAL A 23 O GLU A 52 SHEET 3 AA1 5 LEU A 92 SER A 96 1 O LEU A 92 N GLY A 24 SHEET 4 AA1 5 LEU A 220 ARG A 225 -1 O GLY A 221 N HIS A 95 SHEET 5 AA1 5 PHE A 108 ILE A 113 -1 N THR A 109 O VAL A 224 SHEET 1 AA2 5 GLU A 162 ARG A 164 0 SHEET 2 AA2 5 VAL A 142 GLY A 144 1 N VAL A 143 O GLU A 162 SHEET 3 AA2 5 ALA A 185 ALA A 189 1 O ALA A 185 N GLY A 144 SHEET 4 AA2 5 ASP A 121 PHE A 125 -1 N ALA A 122 O LEU A 188 SHEET 5 AA2 5 GLN A 204 ILE A 205 -1 O GLN A 204 N VAL A 123 SHEET 1 AA3 3 VAL A 265 LYS A 272 0 SHEET 2 AA3 3 GLN A 275 TRP A 283 -1 O TYR A 277 N ALA A 270 SHEET 3 AA3 3 SER A 290 THR A 298 -1 O MET A 295 N LEU A 278 SHEET 1 AA4 5 PHE B 51 ALA B 55 0 SHEET 2 AA4 5 ILE B 21 THR B 25 1 N VAL B 23 O ILE B 54 SHEET 3 AA4 5 LEU B 92 SER B 96 1 O LEU B 92 N GLY B 24 SHEET 4 AA4 5 LEU B 220 ARG B 225 -1 O GLY B 221 N HIS B 95 SHEET 5 AA4 5 PHE B 108 ILE B 113 -1 N THR B 109 O VAL B 224 SHEET 1 AA5 5 GLU B 162 SER B 165 0 SHEET 2 AA5 5 VAL B 142 THR B 145 1 N VAL B 143 O GLU B 162 SHEET 3 AA5 5 ALA B 185 ALA B 189 1 O ALA B 185 N GLY B 144 SHEET 4 AA5 5 ASP B 121 PHE B 125 -1 N ALA B 122 O LEU B 188 SHEET 5 AA5 5 GLN B 204 ILE B 205 -1 O GLN B 204 N VAL B 123 SHEET 1 AA6 3 VAL B 265 LYS B 272 0 SHEET 2 AA6 3 GLN B 275 TRP B 283 -1 O TYR B 277 N ALA B 270 SHEET 3 AA6 3 SER B 290 THR B 298 -1 O ALA B 297 N LEU B 276 LINK SG CYS A 261 C 7J8 A 401 1555 1555 1.77 LINK SG CYS B 261 C 7J8 B 401 1555 1555 1.77 CRYST1 81.241 86.127 107.390 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012309 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011611 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009312 0.00000