HEADER TRANSFERASE 05-SEP-20 7AAY TITLE CRYSTAL STRUCTURE OF MERTK KINASE DOMAIN IN COMPLEX WITH MERESTINIB COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN KINASE MER; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: MERTK KINASE DOMAIN; COMPND 5 SYNONYM: PROTO-ONCOGENE C-MER,RECEPTOR TYROSINE KINASE MERTK; COMPND 6 EC: 2.7.10.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MERTK, MER; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: STAR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS TYROSINE KINASE INHIBITOR, STRUCTURE-BASED DRUG DESIGN, TYPE 2 KEYWDS 2 INHIBITOR, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.SCHIMPL,A.PFLUG,W.MCCOULL,J.W.M.NISSINK,R.C.OVERMAN,P.B.RAWLINS, AUTHOR 2 C.TRUMAN,E.UNDERWOOD,J.WARWICKER,J.WINTER-HOLT REVDAT 5 31-JAN-24 7AAY 1 REMARK REVDAT 4 09-DEC-20 7AAY 1 JRNL REVDAT 3 11-NOV-20 7AAY 1 JRNL REVDAT 2 04-NOV-20 7AAY 1 JRNL REVDAT 1 28-OCT-20 7AAY 0 JRNL AUTH A.PFLUG,M.SCHIMPL,J.W.M.NISSINK,R.C.OVERMAN,P.B.RAWLINS, JRNL AUTH 2 C.TRUMAN,E.UNDERWOOD,J.WARWICKER,J.WINTER-HOLT,W.MCCOULL JRNL TITL A-LOOP INTERACTIONS IN MER TYROSINE KINASE GIVE RISE TO JRNL TITL 2 INHIBITORS WITH TWO-STEP MECHANISM AND LONG RESIDENCE TIME JRNL TITL 3 OF BINDING. JRNL REF BIOCHEM.J. V. 477 4443 2020 JRNL REFN ESSN 1470-8728 JRNL PMID 33119085 JRNL DOI 10.1042/BCJ20200735 REMARK 2 REMARK 2 RESOLUTION. 1.87 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.87 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 68.6 REMARK 3 NUMBER OF REFLECTIONS : 18099 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 960 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.87 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.92 REMARK 3 REFLECTION IN BIN (WORKING SET) : 36 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 1.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.3720 REMARK 3 BIN FREE R VALUE SET COUNT : 3 REMARK 3 BIN FREE R VALUE : 0.4160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2151 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 117 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.51000 REMARK 3 B22 (A**2) : -0.43000 REMARK 3 B33 (A**2) : -0.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.216 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.173 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.121 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.392 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2255 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2135 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3061 ; 1.303 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4904 ; 0.940 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 273 ; 6.092 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 95 ;36.169 ;23.789 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 390 ;13.612 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;13.263 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 339 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2504 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 487 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFMAC5 REMARK 4 REMARK 4 7AAY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-SEP-20. REMARK 100 THE DEPOSITION ID IS D_1292111097. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-AUG-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19081 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.855 REMARK 200 RESOLUTION RANGE LOW (A) : 46.560 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.10800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 63.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.77600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDBID 3BRB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES PH 6.2, 0.75M LICL, 23% PEG REMARK 280 6K, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.09600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 27.09600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 46.55950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 65.49150 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 46.55950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 65.49150 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 27.09600 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 46.55950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 65.49150 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 27.09600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 46.55950 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 65.49150 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 567 REMARK 465 LEU A 744 REMARK 465 SER A 745 REMARK 465 LYS A 746 REMARK 465 LYS A 747 REMARK 465 ILE A 748 REMARK 465 TYR A 749 REMARK 465 SER A 750 REMARK 465 GLY A 751 REMARK 465 ASP A 752 REMARK 465 TYR A 753 REMARK 465 TYR A 754 REMARK 465 ARG A 755 REMARK 465 GLN A 756 REMARK 465 GLY A 757 REMARK 465 ARG A 758 REMARK 465 ILE A 759 REMARK 465 ALA A 760 REMARK 465 LYS A 761 REMARK 465 ASP A 863 REMARK 465 VAL A 864 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 571 CG CD OE1 OE2 REMARK 470 GLU A 572 CG CD OE1 OE2 REMARK 470 GLN A 574 CG CD OE1 NE2 REMARK 470 LYS A 576 CE NZ REMARK 470 GLU A 578 CG CD OE1 OE2 REMARK 470 GLU A 597 CG CD OE1 OE2 REMARK 470 LYS A 607 CE NZ REMARK 470 GLU A 609 CG CD OE1 OE2 REMARK 470 LYS A 666 CG CD CE NZ REMARK 470 LYS A 693 CG CD CE NZ REMARK 470 MET A 762 CG SD CE REMARK 470 ARG A 775 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 818 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 658 -10.52 95.17 REMARK 500 ARG A 722 -21.97 81.51 REMARK 500 TYR A 801 60.57 62.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue L1X A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 904 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7AAX RELATED DB: PDB REMARK 900 PDB ENTRY FOR THE SAME CITATION DBREF 7AAY A 571 864 UNP Q12866 MERTK_HUMAN 571 864 SEQADV 7AAY GLY A 567 UNP Q12866 EXPRESSION TAG SEQADV 7AAY SER A 568 UNP Q12866 EXPRESSION TAG SEQADV 7AAY HIS A 569 UNP Q12866 EXPRESSION TAG SEQADV 7AAY MET A 570 UNP Q12866 EXPRESSION TAG SEQADV 7AAY A UNP Q12866 MET 659 DELETION SEQADV 7AAY A UNP Q12866 SER 660 DELETION SEQADV 7AAY A UNP Q12866 SER 661 DELETION SEQADV 7AAY A UNP Q12866 GLN 662 DELETION SEQRES 1 A 294 GLY SER HIS MET GLU GLU LEU GLN ASN LYS LEU GLU ASP SEQRES 2 A 294 VAL VAL ILE ASP ARG ASN LEU LEU ILE LEU GLY LYS ILE SEQRES 3 A 294 LEU GLY GLU GLY GLU PHE GLY SER VAL MET GLU GLY ASN SEQRES 4 A 294 LEU LYS GLN GLU ASP GLY THR SER LEU LYS VAL ALA VAL SEQRES 5 A 294 LYS THR MET LYS LEU ASP ASN SER SER GLN ARG GLU ILE SEQRES 6 A 294 GLU GLU PHE LEU SER GLU ALA ALA CYS MET LYS ASP PHE SEQRES 7 A 294 SER HIS PRO ASN VAL ILE ARG LEU LEU GLY VAL CYS ILE SEQRES 8 A 294 GLU GLY ILE PRO LYS PRO MET VAL ILE LEU PRO PHE MET SEQRES 9 A 294 LYS TYR GLY ASP LEU HIS THR TYR LEU LEU TYR SER ARG SEQRES 10 A 294 LEU GLU THR GLY PRO LYS HIS ILE PRO LEU GLN THR LEU SEQRES 11 A 294 LEU LYS PHE MET VAL ASP ILE ALA LEU GLY MET GLU TYR SEQRES 12 A 294 LEU SER ASN ARG ASN PHE LEU HIS ARG ASP LEU ALA ALA SEQRES 13 A 294 ARG ASN CYS MET LEU ARG ASP ASP MET THR VAL CYS VAL SEQRES 14 A 294 ALA ASP PHE GLY LEU SER LYS LYS ILE TYR SER GLY ASP SEQRES 15 A 294 TYR TYR ARG GLN GLY ARG ILE ALA LYS MET PRO VAL LYS SEQRES 16 A 294 TRP ILE ALA ILE GLU SER LEU ALA ASP ARG VAL TYR THR SEQRES 17 A 294 SER LYS SER ASP VAL TRP ALA PHE GLY VAL THR MET TRP SEQRES 18 A 294 GLU ILE ALA THR ARG GLY MET THR PRO TYR PRO GLY VAL SEQRES 19 A 294 GLN ASN HIS GLU MET TYR ASP TYR LEU LEU HIS GLY HIS SEQRES 20 A 294 ARG LEU LYS GLN PRO GLU ASP CYS LEU ASP GLU LEU TYR SEQRES 21 A 294 GLU ILE MET TYR SER CYS TRP ARG THR ASP PRO LEU ASP SEQRES 22 A 294 ARG PRO THR PHE SER VAL LEU ARG LEU GLN LEU GLU LYS SEQRES 23 A 294 LEU LEU GLU SER LEU PRO ASP VAL HET L1X A 901 41 HET CL A 902 1 HET CL A 903 1 HET CL A 904 1 HETNAM L1X N-(3-FLUORO-4-{[1-METHYL-6-(1H-PYRAZOL-4-YL)-1H- HETNAM 2 L1X INDAZOL-5-YL]OXY}PHENYL)-1-(4-FLUOROPHENYL)-6-METHYL- HETNAM 3 L1X 2-OXO-1,2-DIHYDROPYRIDINE-3-CARBOXAMIDE HETNAM CL CHLORIDE ION FORMUL 2 L1X C30 H22 F2 N6 O3 FORMUL 3 CL 3(CL 1-) FORMUL 6 HOH *117(H2 O) HELIX 1 AA1 HIS A 569 LEU A 577 1 9 HELIX 2 AA2 GLU A 578 VAL A 581 5 4 HELIX 3 AA3 ASP A 583 ASN A 585 5 3 HELIX 4 AA4 SER A 627 LYS A 642 1 16 HELIX 5 AA5 ASP A 678 SER A 686 1 9 HELIX 6 AA6 PRO A 696 ARG A 717 1 22 HELIX 7 AA7 ALA A 725 ARG A 727 5 3 HELIX 8 AA8 MET A 762 ILE A 767 5 6 HELIX 9 AA9 ALA A 768 ASP A 774 1 7 HELIX 10 AB1 THR A 778 THR A 795 1 18 HELIX 11 AB2 GLN A 805 HIS A 807 5 3 HELIX 12 AB3 GLU A 808 HIS A 815 1 8 HELIX 13 AB4 LEU A 826 CYS A 836 1 11 HELIX 14 AB5 ASP A 840 ARG A 844 5 5 HELIX 15 AB6 THR A 846 SER A 860 1 15 SHEET 1 AA1 5 LEU A 587 GLY A 596 0 SHEET 2 AA1 5 GLY A 599 LYS A 607 -1 O VAL A 601 N GLY A 594 SHEET 3 AA1 5 SER A 613 THR A 620 -1 O VAL A 618 N MET A 602 SHEET 4 AA1 5 MET A 668 PRO A 672 -1 O LEU A 671 N ALA A 617 SHEET 5 AA1 5 GLY A 654 CYS A 656 -1 N GLY A 654 O ILE A 670 SHEET 1 AA2 2 CYS A 729 LEU A 731 0 SHEET 2 AA2 2 VAL A 737 VAL A 739 -1 O CYS A 738 N MET A 730 SITE 1 AC1 19 GLU A 595 VAL A 601 ALA A 617 LYS A 619 SITE 2 AC1 19 GLU A 637 MET A 641 ILE A 650 LEU A 671 SITE 3 AC1 19 PRO A 672 PHE A 673 MET A 674 LEU A 714 SITE 4 AC1 19 PHE A 719 HIS A 721 MET A 730 VAL A 739 SITE 5 AC1 19 ALA A 740 ASP A 741 PHE A 742 SITE 1 AC2 4 PRO A 802 LYS A 820 HOH A1003 HOH A1021 SITE 1 AC3 2 ARG A 687 HOH A1079 SITE 1 AC4 5 ARG A 651 PRO A 672 MET A 674 ARG A 732 SITE 2 AC4 5 HOH A1042 CRYST1 93.119 130.983 54.192 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010739 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007635 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018453 0.00000