HEADER TRANSCRIPTION 09-SEP-20 7AC1 TITLE SOLUTION STRUCTURE OF THE TAF4-RST DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 4; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TBP-ASSOCIATED FACTOR 4B,ATTAF4B,TRANSCRIPTION INITIATION COMPND 5 FACTOR TFIID SUBUNIT 4B,TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT COMPND 6 4; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: TAF4B, AT5G43130, AAF24960.1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS ALPHA-ALPHA HAIRPIN, ALPHA-ALPHA HUB, GENERAL TRANSCRIPTION, KEYWDS 2 TRANSCRIPTION FACTOR BINDING, TFIID, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR L.STABY,R.DAVIDSEN,K.BUGGE,K.SKRIVER,B.B.KRAGELUND REVDAT 4 14-JUN-23 7AC1 1 REMARK REVDAT 3 01-JUN-22 7AC1 1 JRNL REVDAT 2 18-MAY-22 7AC1 1 JRNL REVDAT 1 06-OCT-21 7AC1 0 JRNL AUTH F.FRIIS THEISEN,E.SALLADINI,R.DAVIDSEN,C.JO RASMUSSEN, JRNL AUTH 2 L.STABY,B.B.KRAGELUND,K.SKRIVER JRNL TITL ALPHA ALPHA-HUB COREGULATOR STRUCTURE AND FLEXIBILITY JRNL TITL 2 DETERMINE TRANSCRIPTION FACTOR BINDING AND SELECTION IN JRNL TITL 3 REGULATORY INTERACTOMES. JRNL REF J.BIOL.CHEM. V. 298 01963 2022 JRNL REFN ESSN 1083-351X JRNL PMID 35452682 JRNL DOI 10.1016/J.JBC.2022.101963 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7AC1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-SEP-20. REMARK 100 THE DEPOSITION ID IS D_1292111136. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 143 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 580 UM [U-100% 13C; U-100% 15N] REMARK 210 RST DOMAIN FROM TAF4, 20 MM REMARK 210 SODIUM PHOSPHATE, 100 MM SODIUM REMARK 210 CHLORIDE, 0.2 % W/V SODIUM AZIDE, REMARK 210 0.7 MM DSS, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D HNCACB; 3D CBCA(CO) REMARK 210 NH; 3D (H)N(CA)NNH; 3D HNCO; 3D REMARK 210 HN(CA)CO; 3D 1H-15N TOCSY; 3D REMARK 210 HCCH-TOCSY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC; 3D 1H-15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, VNMRJ, CCPNMR ANALYSIS, REMARK 210 TALOS, NMRPIPE, PROCHECK / REMARK 210 PROCHECK-NMR, CYANA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 5 ILE A 184 -60.49 -98.28 REMARK 500 7 GLN A 251 84.05 60.75 REMARK 500 9 LYS A 189 -54.09 -139.18 REMARK 500 13 GLN A 251 80.15 65.75 REMARK 500 18 LYS A 189 -52.32 -170.89 REMARK 500 18 ASN A 253 -67.45 -136.22 REMARK 500 19 ASN A 185 -61.26 -155.73 REMARK 500 19 GLN A 251 71.24 57.36 REMARK 500 20 LYS A 189 -53.49 -133.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34557 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF THE TAF4-RST DOMAIN DBREF 7AC1 A 182 254 UNP F4K4L7 TAF4B_ARATH 182 254 SEQADV 7AC1 MET A 180 UNP F4K4L7 INITIATING METHIONINE SEQADV 7AC1 MET A 181 UNP F4K4L7 EXPRESSION TAG SEQRES 1 A 75 MET MET ASN PRO ILE ASN ARG ASN PRO LYS GLN VAL PRO SEQRES 2 A 75 PHE ALA ALA LEU LEU PRO THR LEU MET ASN GLN LEU ASP SEQRES 3 A 75 LYS ASP ARG ALA LEU GLN LEU ARG THR LEU TYR ALA ARG SEQRES 4 A 75 LEU LYS LYS ASN GLU ILE PRO LYS GLU GLY PHE THR ARG SEQRES 5 A 75 HIS MET LYS ASP ILE VAL GLY ASP GLN MET LEU ARG MET SEQRES 6 A 75 ALA VAL SER LYS LEU GLN GLN VAL ASN TYR HELIX 1 AA1 PRO A 192 LEU A 204 1 13 HELIX 2 AA2 ASP A 205 LYS A 221 1 17 HELIX 3 AA3 PRO A 225 GLY A 238 1 14 HELIX 4 AA4 GLY A 238 GLN A 251 1 14 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1