HEADER TOXIN/ANTITOXIN 18-SEP-20 7AER TITLE REBUILT AND RE-REFINED PDB ENTRY 5YEP: TRI-AMPYLATED SHEWANELLA TITLE 2 ONEIDENSIS HEPN TOXIN IN COMPLEX WITH MNT ANTITOXIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: TOXIN-ANTITOXIN SYSTEM ANTIDOTE MNT FAMILY; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: TOXIN-ANTITOXIN SYSTEM TOXIN HEPN FAMILY; COMPND 7 CHAIN: B, C, D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHEWANELLA ONEIDENSIS (STRAIN MR-1); SOURCE 3 ORGANISM_TAXID: 211586; SOURCE 4 STRAIN: MR-1; SOURCE 5 GENE: SO_3165; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: SHEWANELLA ONEIDENSIS (STRAIN MR-1); SOURCE 10 ORGANISM_TAXID: 211586; SOURCE 11 STRAIN: MR-1; SOURCE 12 GENE: SO_3166; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TOXIN-ANTITOXIN SYSTEM, MNT-HEPN, AMPYLATION, TOXIN/ANTITOXIN, TOXIN- KEYWDS 2 ANTITOXIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR G.TAMULAITIENE,G.SASNAUSKAS,I.SONGAILIENE,J.JUOZAPAITIS,V.SIKSNYS REVDAT 1 30-DEC-20 7AER 0 JRNL AUTH I.SONGAILIENE,J.JUOZAPAITIS,G.TAMULAITIENE,A.RUKSENAITE, JRNL AUTH 2 S.SULCIUS,G.SASNAUSKAS,C.VENCLOVAS,V.SIKSNYS JRNL TITL HEPN-MNT TOXIN-ANTITOXIN SYSTEM: THE HEPN RIBONUCLEASE IS JRNL TITL 2 NEUTRALIZED BY OLIGOAMPYLATION. JRNL REF MOL.CELL V. 80 955 2020 JRNL REFN ISSN 1097-2765 JRNL PMID 33290744 JRNL DOI 10.1016/J.MOLCEL.2020.11.034 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH X.JIA,J.YAO,Z.GAO,G.LIU,Y.H.DONG,X.WANG,H.ZHANG REMARK 1 TITL STRUCTURE-FUNCTION ANALYSES REVEAL THE MOLECULAR REMARK 1 TITL 2 ARCHITECTURE AND NEUTRALIZATION MECHANISM OF A BACTERIAL REMARK 1 TITL 3 HEPN-MNT TOXIN-ANTITOXIN SYSTEM. REMARK 1 REF J. BIOL. CHEM. V. 293 6812 2018 REMARK 1 REFN ESSN 1083-351X REMARK 1 PMID 29555683 REMARK 1 DOI 10.1074/JBC.RA118.002421 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX PHENIX-1.12-2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.15 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 14270 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 711 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.1500 - 5.1283 1.00 2860 150 0.2035 0.2456 REMARK 3 2 5.1283 - 4.0712 1.00 2710 143 0.2076 0.2414 REMARK 3 3 4.0712 - 3.5567 1.00 2675 140 0.2362 0.2901 REMARK 3 4 3.5567 - 3.2316 1.00 2689 141 0.2784 0.3621 REMARK 3 5 3.2316 - 3.0000 1.00 2625 137 0.2989 0.3341 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.450 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.850 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 72.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 4265 REMARK 3 ANGLE : 0.552 5804 REMARK 3 CHIRALITY : 0.037 693 REMARK 3 PLANARITY : 0.003 735 REMARK 3 DIHEDRAL : 13.316 2581 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 3 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN B AND (RESID 112 THROUGH 130 OR REMARK 3 (RESID 131 THROUGH 133 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB ))) REMARK 3 ) REMARK 3 SELECTION : (CHAIN C AND (RESID 112 THROUGH 120 OR REMARK 3 (RESID 121 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 122 REMARK 3 THROUGH 133)) REMARK 3 ATOM PAIRS NUMBER : 288 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: (CHAIN B AND (RESID 112 THROUGH 130 OR REMARK 3 (RESID 131 THROUGH 133 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB ))) REMARK 3 ) REMARK 3 SELECTION : (CHAIN D AND (RESID 112 THROUGH 120 OR REMARK 3 (RESID 121 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 122 REMARK 3 THROUGH 130 OR (RESID 131 THROUGH 133 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )))) REMARK 3 ATOM PAIRS NUMBER : 288 REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN B AND ((RESID 2 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 3 THROUGH 16 OR (RESID 17 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 18 THROUGH 20 OR REMARK 3 (RESID 21 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 22 REMARK 3 THROUGH 27 OR (RESID 28 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 29 THROUGH 30 OR (RESID 31 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 32 THROUGH 59 OR REMARK 3 (RESID 60 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )))) REMARK 3 SELECTION : (CHAIN C AND (RESID 2 THROUGH 20 OR REMARK 3 (RESID 21 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 22 REMARK 3 THROUGH 27 OR (RESID 28 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 29 OR (RESID 30 THROUGH 31 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 32 THROUGH 60)) REMARK 3 ATOM PAIRS NUMBER : 800 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: (CHAIN B AND ((RESID 2 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 3 THROUGH 16 OR (RESID 17 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 18 THROUGH 20 OR REMARK 3 (RESID 21 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 22 REMARK 3 THROUGH 27 OR (RESID 28 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 29 THROUGH 30 OR (RESID 31 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 32 THROUGH 59 OR REMARK 3 (RESID 60 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )))) REMARK 3 SELECTION : (CHAIN D AND ((RESID 2 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 3 THROUGH 29 OR (RESID 30 REMARK 3 THROUGH 31 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 32 REMARK 3 THROUGH 59 OR (RESID 60 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB ))) REMARK 3 ) REMARK 3 ATOM PAIRS NUMBER : 800 REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 3 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN B AND (RESID 81 THROUGH 90 OR REMARK 3 (RESID 91 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )))) REMARK 3 SELECTION : (CHAIN C AND RESID 81 THROUGH 91) REMARK 3 ATOM PAIRS NUMBER : 146 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: (CHAIN B AND (RESID 81 THROUGH 90 OR REMARK 3 (RESID 91 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )))) REMARK 3 SELECTION : (CHAIN D AND (RESID 81 THROUGH 90 OR REMARK 3 (RESID 91 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )))) REMARK 3 ATOM PAIRS NUMBER : 146 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7AER COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-SEP-20. REMARK 100 THE DEPOSITION ID IS D_1292111145. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-APR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9788 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14273 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.9300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.64800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.510 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXCD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BICINE (PH 8.6), 14% PEG6000 AND REMARK 280 8% ETHLENE GLYCOL, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 28.30500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 112.19000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.30500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 112.19000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 30 REMARK 465 GLN A 31 REMARK 465 GLY A 32 REMARK 465 THR A 33 REMARK 465 GLN A 34 REMARK 465 HIS A 35 REMARK 465 ARG A 36 REMARK 465 ASN A 37 REMARK 465 ASN A 128 REMARK 465 THR A 129 REMARK 465 ALA A 130 REMARK 465 ALA A 131 REMARK 465 LYS A 132 REMARK 465 ALA A 133 REMARK 465 HIS A 134 REMARK 465 ARG A 135 REMARK 465 GLY A 136 REMARK 465 GLU A 137 REMARK 465 SER A 138 REMARK 465 LEU A 139 REMARK 465 HIS B 134 REMARK 465 HIS B 135 REMARK 465 HIS B 136 REMARK 465 HIS B 137 REMARK 465 HIS B 138 REMARK 465 HIS B 139 REMARK 465 MSE C 1 REMARK 465 HIS C 134 REMARK 465 HIS C 135 REMARK 465 HIS C 136 REMARK 465 HIS C 137 REMARK 465 HIS C 138 REMARK 465 HIS C 139 REMARK 465 MSE D 1 REMARK 465 HIS D 134 REMARK 465 HIS D 135 REMARK 465 HIS D 136 REMARK 465 HIS D 137 REMARK 465 HIS D 138 REMARK 465 HIS D 139 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MSE A 1 CG SE CE REMARK 470 GLN A 2 CG CD OE1 NE2 REMARK 470 GLN A 3 CG CD OE1 NE2 REMARK 470 LEU A 4 CG CD1 CD2 REMARK 470 LYS B 30 CG CD CE NZ REMARK 470 GLN B 67 CG CD OE1 NE2 REMARK 470 GLU B 121 CG CD OE1 OE2 REMARK 470 GLU B 133 CG CD OE1 OE2 REMARK 470 ASN C 2 CG OD1 ND2 REMARK 470 LYS C 17 CG CD CE NZ REMARK 470 GLN C 60 CG CD OE1 NE2 REMARK 470 LYS C 91 CG CD CE NZ REMARK 470 LYS C 92 CG CD CE NZ REMARK 470 GLU C 106 CG CD OE1 OE2 REMARK 470 LYS C 131 CG CD CE NZ REMARK 470 GLU C 133 CG CD OE1 OE2 REMARK 470 LYS D 17 CG CD CE NZ REMARK 470 GLN D 21 CG CD OE1 NE2 REMARK 470 GLN D 28 CG CD OE1 NE2 REMARK 470 GLN D 31 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 88 -75.75 -79.50 REMARK 500 ASP B 25 -3.86 -156.32 REMARK 500 VAL B 101 -72.76 -74.09 REMARK 500 GLN B 105 137.47 -173.71 REMARK 500 GLN C 105 148.47 -170.16 REMARK 500 ASP D 103 59.91 -94.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5YEP RELATED DB: PDB REMARK 900 STRUCTURE 5YEP WAS RE-BUILT AND RE-REFINED FIXING CHAIN TRACING IN REMARK 900 CHAIN A AND ADDING TRI-AMPYLATION MODIFICATION ON Y104 OF CHAINS B REMARK 900 AND C REMARK 900 RELATED ID: 7AE2 RELATED DB: PDB REMARK 900 PDB ENTRIES FOR THE SAME CITATION REMARK 900 RELATED ID: 7AE6 RELATED DB: PDB REMARK 900 PDB ENTRIES FOR THE SAME CITATION REMARK 900 RELATED ID: 7AE8 RELATED DB: PDB REMARK 900 PDB ENTRIES FOR THE SAME CITATION REMARK 900 RELATED ID: 7AE9 RELATED DB: PDB REMARK 900 PDB ENTRIES FOR THE SAME CITATION DBREF 7AER A 1 139 UNP Q8ECH7 Q8ECH7_SHEON 1 139 DBREF 7AER B 1 133 UNP Q8ECH6 Q8ECH6_SHEON 1 133 DBREF 7AER C 1 133 UNP Q8ECH6 Q8ECH6_SHEON 1 133 DBREF 7AER D 1 133 UNP Q8ECH6 Q8ECH6_SHEON 1 133 SEQADV 7AER HIS B 134 UNP Q8ECH6 EXPRESSION TAG SEQADV 7AER HIS B 135 UNP Q8ECH6 EXPRESSION TAG SEQADV 7AER HIS B 136 UNP Q8ECH6 EXPRESSION TAG SEQADV 7AER HIS B 137 UNP Q8ECH6 EXPRESSION TAG SEQADV 7AER HIS B 138 UNP Q8ECH6 EXPRESSION TAG SEQADV 7AER HIS B 139 UNP Q8ECH6 EXPRESSION TAG SEQADV 7AER HIS C 134 UNP Q8ECH6 EXPRESSION TAG SEQADV 7AER HIS C 135 UNP Q8ECH6 EXPRESSION TAG SEQADV 7AER HIS C 136 UNP Q8ECH6 EXPRESSION TAG SEQADV 7AER HIS C 137 UNP Q8ECH6 EXPRESSION TAG SEQADV 7AER HIS C 138 UNP Q8ECH6 EXPRESSION TAG SEQADV 7AER HIS C 139 UNP Q8ECH6 EXPRESSION TAG SEQADV 7AER HIS D 134 UNP Q8ECH6 EXPRESSION TAG SEQADV 7AER HIS D 135 UNP Q8ECH6 EXPRESSION TAG SEQADV 7AER HIS D 136 UNP Q8ECH6 EXPRESSION TAG SEQADV 7AER HIS D 137 UNP Q8ECH6 EXPRESSION TAG SEQADV 7AER HIS D 138 UNP Q8ECH6 EXPRESSION TAG SEQADV 7AER HIS D 139 UNP Q8ECH6 EXPRESSION TAG SEQRES 1 A 139 MSE GLN GLN LEU ASN GLU ASN LYS ILE ILE LYS LEU LEU SEQRES 2 A 139 ARG ASP ASN ILE PRO LYS LEU GLN LEU ILE TYR LEU PHE SEQRES 3 A 139 GLY SER TYR SER GLN GLY THR GLN HIS ARG ASN SER ASP SEQRES 4 A 139 ILE ASP ILE ALA VAL LEU ALA ALA ASP THR LEU ASP ASN SEQRES 5 A 139 ILE ALA ARG TRP GLU LEU ALA GLN LYS LEU ALA SER ALA SEQRES 6 A 139 LEU ASP SER ASP VAL ASP LEU VAL ASP LEU ARG SER ALA SEQRES 7 A 139 SER THR VAL LEU CYS GLN GLN VAL VAL THR GLN GLY LYS SEQRES 8 A 139 GLN LEU TRP GLY THR GLN GLN ASP ASP GLU LEU PHE ALA SEQRES 9 A 139 VAL LYS THR ILE SER MSE TYR GLN HIS LEU GLN ALA GLU SEQRES 10 A 139 ARG GLN ALA ILE ILE ASP ASP VAL MSE ALA ASN THR ALA SEQRES 11 A 139 ALA LYS ALA HIS ARG GLY GLU SER LEU SEQRES 1 B 139 MSE ASN ASP ILE ILE ILE ASN LYS ILE ALA THR ILE LYS SEQRES 2 B 139 ARG CYS ILE LYS ARG ILE GLN GLN VAL TYR GLY ASP GLY SEQRES 3 B 139 SER GLN PHE LYS GLN ASP PHE THR LEU GLN ASP SER VAL SEQRES 4 B 139 ILE LEU ASN LEU GLN ARG CYS CYS GLU ALA CYS ILE ASP SEQRES 5 B 139 ILE ALA ASN HIS ILE ASN ARG GLN GLN GLN LEU GLY ILE SEQRES 6 B 139 PRO GLN SER SER ARG ASP SER PHE THR LEU LEU ALA GLN SEQRES 7 B 139 ASN ASN LEU ILE THR GLN PRO LEU SER ASP ASN LEU LYS SEQRES 8 B 139 LYS MSE VAL GLY LEU ARG ASN ILE ALA VAL HIS ASP TYR SEQRES 9 B 139 GLN GLU LEU ASN LEU ASP ILE VAL VAL HIS VAL VAL GLN SEQRES 10 B 139 HIS HIS LEU GLU ASP PHE GLU GLN PHE ILE ASP VAL ILE SEQRES 11 B 139 LYS ALA GLU HIS HIS HIS HIS HIS HIS SEQRES 1 C 139 MSE ASN ASP ILE ILE ILE ASN LYS ILE ALA THR ILE LYS SEQRES 2 C 139 ARG CYS ILE LYS ARG ILE GLN GLN VAL TYR GLY ASP GLY SEQRES 3 C 139 SER GLN PHE LYS GLN ASP PHE THR LEU GLN ASP SER VAL SEQRES 4 C 139 ILE LEU ASN LEU GLN ARG CYS CYS GLU ALA CYS ILE ASP SEQRES 5 C 139 ILE ALA ASN HIS ILE ASN ARG GLN GLN GLN LEU GLY ILE SEQRES 6 C 139 PRO GLN SER SER ARG ASP SER PHE THR LEU LEU ALA GLN SEQRES 7 C 139 ASN ASN LEU ILE THR GLN PRO LEU SER ASP ASN LEU LYS SEQRES 8 C 139 LYS MSE VAL GLY LEU ARG ASN ILE ALA VAL HIS ASP TYR SEQRES 9 C 139 GLN GLU LEU ASN LEU ASP ILE VAL VAL HIS VAL VAL GLN SEQRES 10 C 139 HIS HIS LEU GLU ASP PHE GLU GLN PHE ILE ASP VAL ILE SEQRES 11 C 139 LYS ALA GLU HIS HIS HIS HIS HIS HIS SEQRES 1 D 139 MSE ASN ASP ILE ILE ILE ASN LYS ILE ALA THR ILE LYS SEQRES 2 D 139 ARG CYS ILE LYS ARG ILE GLN GLN VAL TYR GLY ASP GLY SEQRES 3 D 139 SER GLN PHE LYS GLN ASP PHE THR LEU GLN ASP SER VAL SEQRES 4 D 139 ILE LEU ASN LEU GLN ARG CYS CYS GLU ALA CYS ILE ASP SEQRES 5 D 139 ILE ALA ASN HIS ILE ASN ARG GLN GLN GLN LEU GLY ILE SEQRES 6 D 139 PRO GLN SER SER ARG ASP SER PHE THR LEU LEU ALA GLN SEQRES 7 D 139 ASN ASN LEU ILE THR GLN PRO LEU SER ASP ASN LEU LYS SEQRES 8 D 139 LYS MSE VAL GLY LEU ARG ASN ILE ALA VAL HIS ASP TYR SEQRES 9 D 139 GLN GLU LEU ASN LEU ASP ILE VAL VAL HIS VAL VAL GLN SEQRES 10 D 139 HIS HIS LEU GLU ASP PHE GLU GLN PHE ILE ASP VAL ILE SEQRES 11 D 139 LYS ALA GLU HIS HIS HIS HIS HIS HIS MODRES 7AER MSE A 110 MET MODIFIED RESIDUE MODRES 7AER MSE A 126 MET MODIFIED RESIDUE MODRES 7AER MSE B 1 MET MODIFIED RESIDUE MODRES 7AER MSE B 93 MET MODIFIED RESIDUE MODRES 7AER MSE C 93 MET MODIFIED RESIDUE MODRES 7AER MSE D 93 MET MODIFIED RESIDUE HET MSE A 1 5 HET MSE A 110 8 HET MSE A 126 8 HET MSE B 1 8 HET MSE B 93 8 HET MSE C 93 8 HET MSE D 93 8 HET AMP B 201 22 HET AMP B 202 22 HET AMP B 203 22 HET AMP C 201 22 HET AMP C 202 22 HET AMP C 203 22 HETNAM MSE SELENOMETHIONINE HETNAM AMP ADENOSINE MONOPHOSPHATE FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 5 AMP 6(C10 H14 N5 O7 P) HELIX 1 AA1 MSE A 1 ILE A 17 1 17 HELIX 2 AA2 ASP A 51 ASP A 67 1 17 HELIX 3 AA3 SER A 79 GLN A 89 1 11 HELIX 4 AA4 THR A 96 ARG A 118 1 23 HELIX 5 AA5 ARG A 118 MSE A 126 1 9 HELIX 6 AA6 ASN B 2 TYR B 23 1 22 HELIX 7 AA7 GLN B 28 GLN B 31 5 4 HELIX 8 AA8 ASP B 32 GLN B 61 1 30 HELIX 9 AA9 SER B 68 ASN B 79 1 12 HELIX 10 AB1 THR B 83 HIS B 102 1 20 HELIX 11 AB2 ASN B 108 HIS B 119 1 12 HELIX 12 AB3 HIS B 119 GLU B 133 1 15 HELIX 13 AB4 ASP C 3 GLY C 24 1 22 HELIX 14 AB5 GLN C 28 GLN C 31 5 4 HELIX 15 AB6 ASP C 32 GLN C 62 1 31 HELIX 16 AB7 ARG C 70 ASN C 79 1 10 HELIX 17 AB8 THR C 83 HIS C 102 1 20 HELIX 18 AB9 ASN C 108 HIS C 119 1 12 HELIX 19 AC1 HIS C 119 GLU C 133 1 15 HELIX 20 AC2 ASP D 3 GLY D 24 1 22 HELIX 21 AC3 ASP D 32 GLN D 61 1 30 HELIX 22 AC4 SER D 68 ASN D 79 1 12 HELIX 23 AC5 THR D 83 GLY D 95 1 13 HELIX 24 AC6 LEU D 96 HIS D 102 1 7 HELIX 25 AC7 ASN D 108 HIS D 119 1 12 HELIX 26 AC8 HIS D 119 GLU D 133 1 15 SHEET 1 AA1 4 ASP A 69 ASP A 74 0 SHEET 2 AA1 4 ASP A 39 ALA A 46 1 N VAL A 44 O VAL A 73 SHEET 3 AA1 4 LEU A 20 PHE A 26 -1 N TYR A 24 O ALA A 43 SHEET 4 AA1 4 LYS A 91 TRP A 94 -1 O LEU A 93 N ILE A 23 LINK C SER A 109 N MSE A 110 1555 1555 1.33 LINK C MSE A 110 N TYR A 111 1555 1555 1.34 LINK C VAL A 125 N MSE A 126 1555 1555 1.33 LINK C MSE A 126 N ALA A 127 1555 1555 1.33 LINK C MSE B 1 N ASN B 2 1555 1555 1.33 LINK C LYS B 92 N MSE B 93 1555 1555 1.33 LINK C MSE B 93 N VAL B 94 1555 1555 1.34 LINK OH TYR B 104 P AMP B 201 1555 1555 1.59 LINK O3' AMP B 201 P AMP B 202 1555 1555 1.60 LINK O3' AMP B 202 P AMP B 203 1555 1555 1.59 LINK C LYS C 92 N MSE C 93 1555 1555 1.33 LINK C MSE C 93 N VAL C 94 1555 1555 1.34 LINK OH TYR C 104 P AMP C 201 1555 1555 1.56 LINK O3' AMP C 201 P AMP C 202 1555 1555 1.59 LINK O3' AMP C 202 P AMP C 203 1555 1555 1.60 LINK C LYS D 92 N MSE D 93 1555 1555 1.33 LINK C MSE D 93 N VAL D 94 1555 1555 1.34 CRYST1 56.610 224.380 53.310 90.00 90.00 90.00 P 21 21 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017665 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004457 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018758 0.00000 HETATM 1 N MSE A 1 14.106 9.529 35.738 1.00 82.72 N HETATM 2 CA MSE A 1 14.268 8.843 34.461 1.00 93.32 C HETATM 3 C MSE A 1 14.372 9.836 33.310 1.00 85.14 C HETATM 4 O MSE A 1 15.165 9.646 32.389 1.00 85.24 O HETATM 5 CB MSE A 1 13.104 7.879 34.218 1.00 87.62 C