HEADER LYASE 21-SEP-20 7AG1 TITLE CRYSTAL STRUCTURE OF E. COLI SFP ALDOLASE (YIHT) FROM SULFO-EMP TITLE 2 PATHWAY COMPND MOL_ID: 1; COMPND 2 MOLECULE: SULFOFRUCTOSEPHOSPHATE ALDOLASE; COMPND 3 CHAIN: Z, X; COMPND 4 SYNONYM: SFP ALDOLASE; COMPND 5 EC: 4.1.2.57; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: YIHT, B3881, JW3852; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21B KEYWDS SULFOFRUCTOSE PHOSPHATE, SFP ALDOLASE, SULFOGLYCOLYSIS, KEYWDS 2 SULFOLACTALDEHYDE, SULFOEMP, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR M.SHARMA,G.J.DAVIES,Y.JIN REVDAT 2 31-JAN-24 7AG1 1 REMARK REVDAT 1 14-APR-21 7AG1 0 JRNL AUTH M.SHARMA,P.ABAYAKOON,R.EPA,Y.JIN,J.P.LINGFORD,T.SHIMADA, JRNL AUTH 2 M.NAKANO,J.W.MUI,A.ISHIHAMA,E.D.GODDARD-BORGER,G.J.DAVIES, JRNL AUTH 3 S.J.WILLIAMS JRNL TITL MOLECULAR BASIS OF SULFOSUGAR SELECTIVITY IN JRNL TITL 2 SULFOGLYCOLYSIS. JRNL REF ACS CENT.SCI. V. 7 476 2021 JRNL REFN ESSN 2374-7951 JRNL PMID 33791429 JRNL DOI 10.1021/ACSCENTSCI.0C01285 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0266 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 43765 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2261 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3180 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.2710 REMARK 3 BIN FREE R VALUE SET COUNT : 199 REMARK 3 BIN FREE R VALUE : 0.2630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4483 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 390 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.74000 REMARK 3 B22 (A**2) : -2.92000 REMARK 3 B33 (A**2) : 1.46000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.24000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.173 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.147 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.122 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.576 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4619 ; 0.009 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4508 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6246 ; 1.539 ; 1.634 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10356 ; 1.358 ; 1.581 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 600 ; 5.893 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 234 ;32.785 ;22.393 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 789 ;12.736 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;10.686 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 600 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5314 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1016 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 Z 2 293 X 2 293 9331 0.050 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7AG1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-SEP-20. REMARK 100 THE DEPOSITION ID IS D_1292111238. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.29 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46029 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 47.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.14500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.95500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1TO3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.25 M SODIUM NITRATE, REMARK 280 0.1 M BISTRIS PROPANE PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 25.58300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 77.91350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 25.58300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 77.91350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 47020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: Z, X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -20.00857 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 87.36200 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET Z 1 REMARK 465 HIS Z 299 REMARK 465 HIS Z 300 REMARK 465 MET X 1 REMARK 465 HIS X 295 REMARK 465 HIS X 296 REMARK 465 HIS X 297 REMARK 465 HIS X 298 REMARK 465 HIS X 299 REMARK 465 HIS X 300 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN Z 2 CG OD1 ND2 REMARK 470 LYS Z 3 CG CD CE NZ REMARK 470 LYS Z 170 CG CD CE NZ REMARK 470 ARG Z 213 NE CZ NH1 NH2 REMARK 470 HIS Z 297 CG ND1 CD2 CE1 NE2 REMARK 470 HIS Z 298 CG ND1 CD2 CE1 NE2 REMARK 470 ASN X 2 CG OD1 ND2 REMARK 470 LYS X 3 CG CD CE NZ REMARK 470 LYS X 170 CG CD CE NZ REMARK 470 ARG X 213 CD NE CZ NH1 NH2 REMARK 470 LYS X 290 CG CD CE NZ REMARK 470 GLU X 294 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG Z 24 -114.49 -118.64 REMARK 500 CYS Z 70 -6.83 -150.76 REMARK 500 ARG X 24 -114.55 -117.23 REMARK 500 CYS X 70 -8.12 -150.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH Z 703 DISTANCE = 6.07 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO Z 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO Z 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO Z 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO X 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO X 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO X 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO X 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO X 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO X 406 DBREF 7AG1 Z 1 292 UNP P32141 SQUT_ECOLI 1 292 DBREF 7AG1 X 1 292 UNP P32141 SQUT_ECOLI 1 292 SEQADV 7AG1 LEU Z 293 UNP P32141 EXPRESSION TAG SEQADV 7AG1 GLU Z 294 UNP P32141 EXPRESSION TAG SEQADV 7AG1 HIS Z 295 UNP P32141 EXPRESSION TAG SEQADV 7AG1 HIS Z 296 UNP P32141 EXPRESSION TAG SEQADV 7AG1 HIS Z 297 UNP P32141 EXPRESSION TAG SEQADV 7AG1 HIS Z 298 UNP P32141 EXPRESSION TAG SEQADV 7AG1 HIS Z 299 UNP P32141 EXPRESSION TAG SEQADV 7AG1 HIS Z 300 UNP P32141 EXPRESSION TAG SEQADV 7AG1 LEU X 293 UNP P32141 EXPRESSION TAG SEQADV 7AG1 GLU X 294 UNP P32141 EXPRESSION TAG SEQADV 7AG1 HIS X 295 UNP P32141 EXPRESSION TAG SEQADV 7AG1 HIS X 296 UNP P32141 EXPRESSION TAG SEQADV 7AG1 HIS X 297 UNP P32141 EXPRESSION TAG SEQADV 7AG1 HIS X 298 UNP P32141 EXPRESSION TAG SEQADV 7AG1 HIS X 299 UNP P32141 EXPRESSION TAG SEQADV 7AG1 HIS X 300 UNP P32141 EXPRESSION TAG SEQRES 1 Z 300 MET ASN LYS TYR THR ILE ASN ASP ILE THR ARG ALA SER SEQRES 2 Z 300 GLY GLY PHE ALA MET LEU ALA VAL ASP GLN ARG GLU ALA SEQRES 3 Z 300 MET ARG MET MET PHE ALA ALA ALA GLY ALA PRO ALA PRO SEQRES 4 Z 300 VAL ALA ASP SER VAL LEU THR ASP PHE LYS VAL ASN ALA SEQRES 5 Z 300 ALA LYS ALA LEU SER PRO TYR ALA SER ALA ILE LEU VAL SEQRES 6 Z 300 ASP GLN GLN PHE CYS TYR ARG GLN VAL VAL GLU GLN ASN SEQRES 7 Z 300 ALA ILE ALA LYS SER CYS ALA MET ILE VAL ALA ALA ASP SEQRES 8 Z 300 GLU PHE ILE PRO GLY ASN GLY ILE PRO VAL ASP SER VAL SEQRES 9 Z 300 VAL ILE ASP ARG LYS ILE ASN PRO LEU GLN ILE LYS GLN SEQRES 10 Z 300 ASP GLY GLY LYS ALA LEU LYS LEU LEU VAL LEU TRP ARG SEQRES 11 Z 300 SER ASP GLU ASP ALA GLN GLN ARG LEU ASP MET VAL LYS SEQRES 12 Z 300 GLU PHE ASN GLU LEU CYS HIS SER HIS GLY LEU VAL SER SEQRES 13 Z 300 ILE ILE GLU PRO VAL VAL ARG PRO PRO ARG ARG GLY ASP SEQRES 14 Z 300 LYS PHE ASP ARG GLU GLN ALA ILE ILE ASP ALA ALA LYS SEQRES 15 Z 300 GLU LEU GLY ASP SER GLY ALA ASP LEU TYR LYS VAL GLU SEQRES 16 Z 300 MET PRO LEU TYR GLY LYS GLY PRO GLN GLN GLU LEU LEU SEQRES 17 Z 300 CYS ALA SER GLN ARG LEU ASN ASP HIS ILE ASN MET PRO SEQRES 18 Z 300 TRP VAL ILE LEU SER SER GLY VAL ASP GLU LYS LEU PHE SEQRES 19 Z 300 PRO ARG ALA VAL ARG VAL ALA MET THR ALA GLY ALA SER SEQRES 20 Z 300 GLY PHE LEU ALA GLY ARG ALA VAL TRP ALA SER VAL VAL SEQRES 21 Z 300 GLY LEU PRO ASP ASN GLU LEU MET LEU ARG ASP VAL CYS SEQRES 22 Z 300 ALA PRO LYS LEU GLN GLN LEU GLY ASP ILE VAL ASP GLU SEQRES 23 Z 300 MET MET ALA LYS ARG ARG LEU GLU HIS HIS HIS HIS HIS SEQRES 24 Z 300 HIS SEQRES 1 X 300 MET ASN LYS TYR THR ILE ASN ASP ILE THR ARG ALA SER SEQRES 2 X 300 GLY GLY PHE ALA MET LEU ALA VAL ASP GLN ARG GLU ALA SEQRES 3 X 300 MET ARG MET MET PHE ALA ALA ALA GLY ALA PRO ALA PRO SEQRES 4 X 300 VAL ALA ASP SER VAL LEU THR ASP PHE LYS VAL ASN ALA SEQRES 5 X 300 ALA LYS ALA LEU SER PRO TYR ALA SER ALA ILE LEU VAL SEQRES 6 X 300 ASP GLN GLN PHE CYS TYR ARG GLN VAL VAL GLU GLN ASN SEQRES 7 X 300 ALA ILE ALA LYS SER CYS ALA MET ILE VAL ALA ALA ASP SEQRES 8 X 300 GLU PHE ILE PRO GLY ASN GLY ILE PRO VAL ASP SER VAL SEQRES 9 X 300 VAL ILE ASP ARG LYS ILE ASN PRO LEU GLN ILE LYS GLN SEQRES 10 X 300 ASP GLY GLY LYS ALA LEU LYS LEU LEU VAL LEU TRP ARG SEQRES 11 X 300 SER ASP GLU ASP ALA GLN GLN ARG LEU ASP MET VAL LYS SEQRES 12 X 300 GLU PHE ASN GLU LEU CYS HIS SER HIS GLY LEU VAL SER SEQRES 13 X 300 ILE ILE GLU PRO VAL VAL ARG PRO PRO ARG ARG GLY ASP SEQRES 14 X 300 LYS PHE ASP ARG GLU GLN ALA ILE ILE ASP ALA ALA LYS SEQRES 15 X 300 GLU LEU GLY ASP SER GLY ALA ASP LEU TYR LYS VAL GLU SEQRES 16 X 300 MET PRO LEU TYR GLY LYS GLY PRO GLN GLN GLU LEU LEU SEQRES 17 X 300 CYS ALA SER GLN ARG LEU ASN ASP HIS ILE ASN MET PRO SEQRES 18 X 300 TRP VAL ILE LEU SER SER GLY VAL ASP GLU LYS LEU PHE SEQRES 19 X 300 PRO ARG ALA VAL ARG VAL ALA MET THR ALA GLY ALA SER SEQRES 20 X 300 GLY PHE LEU ALA GLY ARG ALA VAL TRP ALA SER VAL VAL SEQRES 21 X 300 GLY LEU PRO ASP ASN GLU LEU MET LEU ARG ASP VAL CYS SEQRES 22 X 300 ALA PRO LYS LEU GLN GLN LEU GLY ASP ILE VAL ASP GLU SEQRES 23 X 300 MET MET ALA LYS ARG ARG LEU GLU HIS HIS HIS HIS HIS SEQRES 24 X 300 HIS HET EDO Z 401 4 HET EDO Z 402 4 HET EDO Z 403 4 HET EDO X 401 4 HET EDO X 402 4 HET EDO X 403 4 HET EDO X 404 4 HET EDO X 405 4 HET EDO X 406 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 9(C2 H6 O2) FORMUL 12 HOH *390(H2 O) HELIX 1 AA1 THR Z 5 ILE Z 9 5 5 HELIX 2 AA2 ARG Z 24 ALA Z 34 1 11 HELIX 3 AA3 ALA Z 41 SER Z 57 1 17 HELIX 4 AA4 PRO Z 58 ALA Z 60 5 3 HELIX 5 AA5 CYS Z 70 GLN Z 77 1 8 HELIX 6 AA6 ASN Z 111 ASP Z 118 1 8 HELIX 7 AA7 ASP Z 134 HIS Z 152 1 19 HELIX 8 AA8 ASP Z 172 GLY Z 185 1 14 HELIX 9 AA9 PRO Z 197 LYS Z 201 5 5 HELIX 10 AB1 PRO Z 203 ASP Z 216 1 14 HELIX 11 AB2 LEU Z 233 ALA Z 244 1 12 HELIX 12 AB3 GLY Z 252 ALA Z 257 1 6 HELIX 13 AB4 SER Z 258 VAL Z 260 5 3 HELIX 14 AB5 ASP Z 264 VAL Z 272 1 9 HELIX 15 AB6 VAL Z 272 HIS Z 298 1 27 HELIX 16 AB7 THR X 5 ILE X 9 5 5 HELIX 17 AB8 ARG X 24 ALA X 34 1 11 HELIX 18 AB9 ALA X 41 SER X 57 1 17 HELIX 19 AC1 PRO X 58 ALA X 60 5 3 HELIX 20 AC2 CYS X 70 GLN X 77 1 8 HELIX 21 AC3 ASN X 111 ASP X 118 1 8 HELIX 22 AC4 ASP X 134 HIS X 152 1 19 HELIX 23 AC5 ASP X 172 GLY X 185 1 14 HELIX 24 AC6 MET X 196 LYS X 201 5 6 HELIX 25 AC7 PRO X 203 ASP X 216 1 14 HELIX 26 AC8 LEU X 233 ALA X 244 1 12 HELIX 27 AC9 GLY X 252 ALA X 257 1 6 HELIX 28 AD1 SER X 258 VAL X 260 5 3 HELIX 29 AD2 ASP X 264 VAL X 272 1 9 HELIX 30 AD3 VAL X 272 LEU X 293 1 22 SHEET 1 AA1 9 PHE Z 16 ALA Z 20 0 SHEET 2 AA1 9 ALA Z 62 VAL Z 65 1 O LEU Z 64 N LEU Z 19 SHEET 3 AA1 9 ALA Z 85 ALA Z 89 1 O ILE Z 87 N ILE Z 63 SHEET 4 AA1 9 ALA Z 122 TRP Z 129 1 O ALA Z 122 N VAL Z 88 SHEET 5 AA1 9 VAL Z 155 VAL Z 162 1 O VAL Z 161 N VAL Z 127 SHEET 6 AA1 9 LEU Z 191 GLU Z 195 1 O LYS Z 193 N ILE Z 158 SHEET 7 AA1 9 TRP Z 222 LEU Z 225 1 O LEU Z 225 N VAL Z 194 SHEET 8 AA1 9 GLY Z 248 ALA Z 251 1 O LEU Z 250 N ILE Z 224 SHEET 9 AA1 9 PHE Z 16 ALA Z 20 1 N MET Z 18 O ALA Z 251 SHEET 1 AA2 2 ASP Z 91 GLY Z 96 0 SHEET 2 AA2 2 ILE Z 99 ILE Z 106 -1 O VAL Z 105 N GLU Z 92 SHEET 1 AA3 9 PHE X 16 ALA X 20 0 SHEET 2 AA3 9 ALA X 62 VAL X 65 1 O LEU X 64 N LEU X 19 SHEET 3 AA3 9 ALA X 85 ALA X 89 1 O ILE X 87 N ILE X 63 SHEET 4 AA3 9 ALA X 122 TRP X 129 1 O ALA X 122 N VAL X 88 SHEET 5 AA3 9 VAL X 155 VAL X 162 1 O VAL X 161 N VAL X 127 SHEET 6 AA3 9 LEU X 191 VAL X 194 1 O LYS X 193 N ILE X 158 SHEET 7 AA3 9 TRP X 222 LEU X 225 1 O LEU X 225 N VAL X 194 SHEET 8 AA3 9 GLY X 248 ALA X 251 1 O LEU X 250 N ILE X 224 SHEET 9 AA3 9 PHE X 16 ALA X 20 1 N MET X 18 O ALA X 251 SHEET 1 AA4 2 ASP X 91 GLY X 96 0 SHEET 2 AA4 2 ILE X 99 ILE X 106 -1 O VAL X 105 N GLU X 92 CISPEP 1 ALA Z 38 PRO Z 39 0 2.25 CISPEP 2 ALA X 38 PRO X 39 0 2.09 SITE 1 AC1 4 ASP Z 22 LYS Z 124 GLU Z 159 HOH Z 512 SITE 1 AC2 6 GLN Z 67 TYR Z 71 LYS Z 109 ILE Z 110 SITE 2 AC2 6 ASN Z 111 GLN Z 114 SITE 1 AC3 4 MET Z 242 MET Z 287 ARG Z 291 GLU Z 294 SITE 1 AC4 4 ASP X 22 LYS X 124 GLU X 159 HOH X 506 SITE 1 AC5 6 GLN X 67 TYR X 71 ILE X 110 ASN X 111 SITE 2 AC5 6 GLN X 114 HOH X 520 SITE 1 AC6 6 GLN X 68 PHE X 69 CYS X 70 GLN X 73 SITE 2 AC6 6 HOH X 534 HOH X 569 SITE 1 AC7 6 PRO X 275 GLN X 278 GLN X 279 ASP X 282 SITE 2 AC7 6 HOH X 535 PRO Z 275 SITE 1 AC8 4 LEU X 139 GLU X 183 LEU Z 139 GLU Z 183 SITE 1 AC9 5 VAL X 162 ARG X 163 PRO X 164 HOH X 511 SITE 2 AC9 5 HOH X 592 CRYST1 51.166 155.827 89.624 90.00 102.90 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019544 0.000000 0.004476 0.00000 SCALE2 0.000000 0.006417 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011447 0.00000