data_7AG5 # _entry.id 7AG5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.384 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7AG5 pdb_00007ag5 10.2210/pdb7ag5/pdb WWPDB D_1292111272 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2022-02-02 2 'Structure model' 1 1 2022-03-23 3 'Structure model' 1 2 2024-01-31 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' chem_comp_atom 4 3 'Structure model' chem_comp_bond 5 3 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.journal_volume' 6 2 'Structure model' '_citation.page_first' 7 2 'Structure model' '_citation.page_last' 8 2 'Structure model' '_citation.pdbx_database_id_DOI' 9 2 'Structure model' '_citation.title' 10 2 'Structure model' '_citation.year' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7AG5 _pdbx_database_status.recvd_initial_deposition_date 2020-09-21 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Zeronian, M.R.' 1 ? 'Pearce, N.M.' 2 ? 'Wood, T.M.' 3 ? 'Martin, N.I.' 4 ? 'Janssen, B.J.C.' 5 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Chem Sci' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-6539 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 13 _citation.language ? _citation.page_first 2985 _citation.page_last 2991 _citation.title ;Mechanistic insights into the C55-P targeting lipopeptide antibiotics revealed by structure-activity studies and high-resolution crystal structures ; _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1039/D1SC07190D _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wood, T.M.' 1 ? primary 'Zeronian, M.R.' 2 ? primary 'Buijs, N.' 3 ? primary 'Bertheussen, K.' 4 ? primary 'Abedian, H.K.' 5 ? primary 'Johnson, A.V.' 6 ? primary 'Pearce, N.M.' 7 ? primary 'Lutz, M.' 8 ? primary 'Kemmink, J.' 9 ? primary 'Seirsma, T.' 10 ? primary 'Hamoen, L.W.' 11 ? primary 'Janssen, B.J.C.' 12 ? primary 'Martin, N.I.' 13 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Laspartomycin C double mutant G4D D-allo-Thr9D-Dap' 1087.078 1 ? 'G4D D-allo-Thr9D-Dap' ? ? 2 non-polymer syn 'CALCIUM ION' 40.078 2 ? ? ? ? 3 non-polymer syn 'Geranyl phosphate' 234.229 1 ? ? ? ? 4 non-polymer syn '(~{E})-13-methyltetradec-2-enoic acid' 240.382 1 ? ? ? ? 5 water nat water 18.015 19 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'D(DNP)(CPI)DDGDG(2RA)IP' _entity_poly.pdbx_seq_one_letter_code_can DAXDDGDGXIP _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CALCIUM ION' CA 3 'Geranyl phosphate' RDZ 4 '(~{E})-13-methyltetradec-2-enoic acid' 9GE 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 DNP n 1 3 CPI n 1 4 ASP n 1 5 ASP n 1 6 GLY n 1 7 ASP n 1 8 GLY n 1 9 2RA n 1 10 ILE n 1 11 PRO n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 11 _pdbx_entity_src_syn.organism_scientific 'Streptomyces viridochromogenes' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 1938 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 2RA 'D-peptide linking' n 3-amino-D-alanine 'diaminopropanoic acid' 'C3 H8 N2 O2' 104.108 9GE non-polymer . '(~{E})-13-methyltetradec-2-enoic acid' ? 'C15 H28 O2' 240.382 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CPI 'D-peptide linking' . 6-CARBOXYPIPERIDINE ? 'C6 H11 N O2' 129.157 DNP 'L-peptide linking' n 3-AMINO-ALANINE ? 'C3 H9 N2 O2 1' 105.116 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 RDZ non-polymer . 'Geranyl phosphate' '[(2E)-3,7-dimethylocta-2,6-dienyl] dihydrogen phosphate; [(2~{E})-3,7-dimethylocta-2,6-dienyl] dihydrogen phosphate' 'C10 H19 O4 P' 234.229 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 1 1 ASP ASP A . n A 1 2 DNP 2 2 2 DNP DNP A . n A 1 3 CPI 3 3 3 CPI CPI A . n A 1 4 ASP 4 4 4 ASP ASP A . n A 1 5 ASP 5 5 5 ASP ASP A . n A 1 6 GLY 6 6 6 GLY GLY A . n A 1 7 ASP 7 7 7 ASP ASP A . n A 1 8 GLY 8 8 8 GLY GLY A . n A 1 9 2RA 9 9 9 2RA 2RA A . n A 1 10 ILE 10 10 10 ILE ILE A . n A 1 11 PRO 11 11 11 PRO PRO A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA 1 101 102 CA CA A . C 2 CA 1 102 103 CA CA A . D 3 RDZ 1 103 201 RDZ UNL A . E 4 9GE 1 104 0 9GE 9GE A . F 5 HOH 1 201 19 HOH HOH A . F 5 HOH 2 202 11 HOH HOH A . F 5 HOH 3 203 8 HOH HOH A . F 5 HOH 4 204 4 HOH HOH A . F 5 HOH 5 205 6 HOH HOH A . F 5 HOH 6 206 15 HOH HOH A . F 5 HOH 7 207 17 HOH HOH A . F 5 HOH 8 208 14 HOH HOH A . F 5 HOH 9 209 2 HOH HOH A . F 5 HOH 10 210 3 HOH HOH A . F 5 HOH 11 211 5 HOH HOH A . F 5 HOH 12 212 1 HOH HOH A . F 5 HOH 13 213 9 HOH HOH A . F 5 HOH 14 214 16 HOH HOH A . F 5 HOH 15 215 18 HOH HOH A . F 5 HOH 16 216 22 HOH HOH A . F 5 HOH 17 217 20 HOH HOH A . F 5 HOH 18 218 7 HOH HOH A . F 5 HOH 19 219 13 HOH HOH A . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0267 1 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? STARANISO ? ? ? . 4 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? DIALS ? ? ? . 5 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 7AG5 _cell.details ? _cell.formula_units_Z ? _cell.length_a 40.428 _cell.length_a_esd ? _cell.length_b 40.428 _cell.length_b_esd ? _cell.length_c 31.033 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 12 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7AG5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 177 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 6 2 2' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7AG5 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.40 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 48.82 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.2 M sodium formate, 40% MPD' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M-F' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2019-05-04 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9159 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'DIAMOND BEAMLINE I04-1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9159 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline I04-1 _diffrn_source.pdbx_synchrotron_site Diamond # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 7AG5 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.031 _reflns.d_resolution_low 35.012 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 6321 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 92.2 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 11.7 _reflns.pdbx_Rmerge_I_obs 0.185 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 8.0 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.193 _reflns.pdbx_Rpim_I_all 0.054 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.997 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.031 _reflns_shell.d_res_low 1.116 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.5 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 421 _reflns_shell.percent_possible_all 53.1 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 1.584 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 10.6 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 1.664 _reflns_shell.pdbx_Rpim_I_all 0.504 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.726 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] 0.6900 _refine.aniso_B[1][2] 0.3500 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][2] 0.6900 _refine.aniso_B[2][3] -0.0000 _refine.aniso_B[3][3] -2.2500 _refine.B_iso_max 61.640 _refine.B_iso_mean 16.7510 _refine.B_iso_min 7.040 _refine.correlation_coeff_Fo_to_Fc 0.9790 _refine.correlation_coeff_Fo_to_Fc_free 0.9730 _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7AG5 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.0400 _refine.ls_d_res_low 35.0100 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 6011 _refine.ls_number_reflns_R_free 299 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 82.6600 _refine.ls_percent_reflns_R_free 4.7385 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1215 _refine.ls_R_factor_R_free 0.1432 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1204 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details MASK _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 5O0Z _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.0252 _refine.pdbx_overall_ESU_R_Free 0.0262 _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 1.0350 _refine.overall_SU_ML 0.0210 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 1.0400 _refine_hist.d_res_low 35.0100 _refine_hist.number_atoms_solvent 19 _refine_hist.number_atoms_total 176 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 12 _refine_hist.pdbx_B_iso_mean_ligand 27.48 _refine_hist.pdbx_B_iso_mean_solvent 26.48 _refine_hist.pdbx_number_atoms_protein 91 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 66 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.019 0.015 137 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.002 0.016 152 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.721 1.794 179 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 0.662 1.607 356 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 67.910 6.111 9 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 24.766 16.818 11 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 12.913 15.000 6 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 0.109 0.200 11 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.012 0.020 163 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.002 0.020 21 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? 2.465 3.000 285 ? r_rigid_bond_restr ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.0400 _refine_ls_shell.d_res_low 1.0670 _refine_ls_shell.number_reflns_all 65 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 2 _refine_ls_shell.number_reflns_R_work 63 _refine_ls_shell.percent_reflns_obs 12.0400 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.1630 _refine_ls_shell.R_factor_R_free_error 0.0000 _refine_ls_shell.R_factor_R_work 0.2000 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_R_complete ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 7AG5 _struct.title 'Structure of the Laspartomycin C double mutant G4D D-allo-Thr9D-Dap in complex with Geranyl phosphate' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7AG5 _struct_keywords.text 'Antibiotic, Calcium-dependent antibiotic, Bacterial cell wall biosynthesis inhibitor, Lipopeptide antibiotic' _struct_keywords.pdbx_keywords ANTIBIOTIC # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 5 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 7AG5 _struct_ref.pdbx_db_accession 7AG5 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7AG5 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 11 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 7AG5 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 11 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 11 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 250 ? 1 MORE -9 ? 1 'SSA (A^2)' 1680 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ASP 1 C ? ? ? 1_555 A DNP 2 N ? ? A ASP 1 A DNP 2 1_555 ? ? ? ? ? ? ? 1.319 ? ? covale2 covale both ? A ASP 1 N ? ? ? 1_555 E 9GE . C ? ? A ASP 1 A 9GE 104 1_555 ? ? ? ? ? ? ? 1.343 ? ? covale3 covale both ? A DNP 2 C ? ? ? 1_555 A CPI 3 N ? ? A DNP 2 A CPI 3 1_555 ? ? ? ? ? ? ? 1.360 ? ? covale4 covale one ? A DNP 2 NG ? ? ? 1_555 A PRO 11 C ? ? A DNP 2 A PRO 11 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale5 covale both ? A CPI 3 C ? ? ? 1_555 A ASP 4 N ? ? A CPI 3 A ASP 4 1_555 ? ? ? ? ? ? ? 1.344 ? ? covale6 covale both ? A GLY 8 C ? ? ? 1_555 A 2RA 9 N ? ? A GLY 8 A 2RA 9 1_555 ? ? ? ? ? ? ? 1.318 ? ? covale7 covale both ? A 2RA 9 C ? ? ? 1_555 A ILE 10 N ? ? A 2RA 9 A ILE 10 1_555 ? ? ? ? ? ? ? 1.335 ? ? metalc1 metalc ? ? A ASP 1 OD1 ? ? ? 1_555 C CA . CA ? ? A ASP 1 A CA 102 1_555 ? ? ? ? ? ? ? 2.332 ? ? metalc2 metalc ? ? A DNP 2 O ? ? ? 1_555 B CA . CA ? ? A DNP 2 A CA 101 1_555 ? ? ? ? ? ? ? 2.335 ? ? metalc3 metalc ? ? A ASP 4 OD2 ? ? ? 1_555 C CA . CA ? ? A ASP 4 A CA 102 5_555 ? ? ? ? ? ? ? 2.295 ? ? metalc4 metalc ? ? A ASP 5 OD1 ? ? ? 1_555 B CA . CA ? ? A ASP 5 A CA 101 1_555 ? ? ? ? ? ? ? 2.322 ? ? metalc5 metalc ? ? A GLY 6 O ? ? ? 1_555 B CA . CA ? ? A GLY 6 A CA 101 1_555 ? ? ? ? ? ? ? 2.355 ? ? metalc6 metalc ? ? A ASP 7 OD1 ? ? ? 1_555 C CA . CA ? ? A ASP 7 A CA 102 1_555 ? ? ? ? ? ? ? 2.291 ? ? metalc7 metalc ? ? A GLY 8 O ? ? ? 1_555 B CA . CA ? ? A GLY 8 A CA 101 1_555 ? ? ? ? ? ? ? 2.300 ? ? metalc8 metalc ? ? A ILE 10 O ? ? ? 1_555 B CA . CA ? ? A ILE 10 A CA 101 1_555 ? ? ? ? ? ? ? 2.298 ? ? metalc9 metalc ? ? B CA . CA ? ? ? 1_555 D RDZ . O3 A ? A CA 101 A RDZ 103 1_555 ? ? ? ? ? ? ? 2.264 ? ? metalc10 metalc ? ? B CA . CA ? ? ? 1_555 D RDZ . O3 B ? A CA 101 A RDZ 103 1_555 ? ? ? ? ? ? ? 2.289 ? ? metalc11 metalc ? ? C CA . CA ? ? ? 1_555 D RDZ . O2 A ? A CA 102 A RDZ 103 1_555 ? ? ? ? ? ? ? 2.288 ? ? metalc12 metalc ? ? C CA . CA ? ? ? 1_555 D RDZ . O2 B ? A CA 102 A RDZ 103 1_555 ? ? ? ? ? ? ? 2.218 ? ? metalc13 metalc ? ? C CA . CA ? ? ? 1_555 E 9GE . O ? ? A CA 102 A 9GE 104 1_555 ? ? ? ? ? ? ? 2.333 ? ? metalc14 metalc ? ? C CA . CA ? ? ? 1_555 F HOH . O ? ? A CA 102 A HOH 212 1_555 ? ? ? ? ? ? ? 2.395 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD1 ? A ASP 1 ? A ASP 1 ? 1_555 CA ? C CA . ? A CA 102 ? 1_555 OD2 ? A ASP 4 ? A ASP 4 ? 1_555 35.8 ? 2 OD1 ? A ASP 1 ? A ASP 1 ? 1_555 CA ? C CA . ? A CA 102 ? 1_555 OD1 ? A ASP 7 ? A ASP 7 ? 1_555 90.0 ? 3 OD2 ? A ASP 4 ? A ASP 4 ? 1_555 CA ? C CA . ? A CA 102 ? 1_555 OD1 ? A ASP 7 ? A ASP 7 ? 1_555 96.9 ? 4 OD1 ? A ASP 1 ? A ASP 1 ? 1_555 CA ? C CA . ? A CA 102 ? 1_555 O2 A D RDZ . ? A RDZ 103 ? 1_555 92.2 ? 5 OD2 ? A ASP 4 ? A ASP 4 ? 1_555 CA ? C CA . ? A CA 102 ? 1_555 O2 A D RDZ . ? A RDZ 103 ? 1_555 57.6 ? 6 OD1 ? A ASP 7 ? A ASP 7 ? 1_555 CA ? C CA . ? A CA 102 ? 1_555 O2 A D RDZ . ? A RDZ 103 ? 1_555 87.9 ? 7 OD1 ? A ASP 1 ? A ASP 1 ? 1_555 CA ? C CA . ? A CA 102 ? 1_555 O2 B D RDZ . ? A RDZ 103 ? 1_555 95.4 ? 8 OD2 ? A ASP 4 ? A ASP 4 ? 1_555 CA ? C CA . ? A CA 102 ? 1_555 O2 B D RDZ . ? A RDZ 103 ? 1_555 59.8 ? 9 OD1 ? A ASP 7 ? A ASP 7 ? 1_555 CA ? C CA . ? A CA 102 ? 1_555 O2 B D RDZ . ? A RDZ 103 ? 1_555 95.8 ? 10 O2 A D RDZ . ? A RDZ 103 ? 1_555 CA ? C CA . ? A CA 102 ? 1_555 O2 B D RDZ . ? A RDZ 103 ? 1_555 8.5 ? 11 OD1 ? A ASP 1 ? A ASP 1 ? 1_555 CA ? C CA . ? A CA 102 ? 1_555 O ? E 9GE . ? A 9GE 104 ? 1_555 83.6 ? 12 OD2 ? A ASP 4 ? A ASP 4 ? 1_555 CA ? C CA . ? A CA 102 ? 1_555 O ? E 9GE . ? A 9GE 104 ? 1_555 79.5 ? 13 OD1 ? A ASP 7 ? A ASP 7 ? 1_555 CA ? C CA . ? A CA 102 ? 1_555 O ? E 9GE . ? A 9GE 104 ? 1_555 173.1 ? 14 O2 A D RDZ . ? A RDZ 103 ? 1_555 CA ? C CA . ? A CA 102 ? 1_555 O ? E 9GE . ? A 9GE 104 ? 1_555 95.0 ? 15 O2 B D RDZ . ? A RDZ 103 ? 1_555 CA ? C CA . ? A CA 102 ? 1_555 O ? E 9GE . ? A 9GE 104 ? 1_555 87.5 ? 16 OD1 ? A ASP 1 ? A ASP 1 ? 1_555 CA ? C CA . ? A CA 102 ? 1_555 O ? F HOH . ? A HOH 212 ? 1_555 176.0 ? 17 OD2 ? A ASP 4 ? A ASP 4 ? 1_555 CA ? C CA . ? A CA 102 ? 1_555 O ? F HOH . ? A HOH 212 ? 1_555 140.2 ? 18 OD1 ? A ASP 7 ? A ASP 7 ? 1_555 CA ? C CA . ? A CA 102 ? 1_555 O ? F HOH . ? A HOH 212 ? 1_555 90.7 ? 19 O2 A D RDZ . ? A RDZ 103 ? 1_555 CA ? C CA . ? A CA 102 ? 1_555 O ? F HOH . ? A HOH 212 ? 1_555 83.8 ? 20 O2 B D RDZ . ? A RDZ 103 ? 1_555 CA ? C CA . ? A CA 102 ? 1_555 O ? F HOH . ? A HOH 212 ? 1_555 80.6 ? 21 O ? E 9GE . ? A 9GE 104 ? 1_555 CA ? C CA . ? A CA 102 ? 1_555 O ? F HOH . ? A HOH 212 ? 1_555 95.8 ? 22 O ? A DNP 2 ? A DNP 2 ? 1_555 CA ? B CA . ? A CA 101 ? 1_555 OD1 ? A ASP 5 ? A ASP 5 ? 1_555 85.1 ? 23 O ? A DNP 2 ? A DNP 2 ? 1_555 CA ? B CA . ? A CA 101 ? 1_555 O ? A GLY 6 ? A GLY 6 ? 1_555 100.6 ? 24 OD1 ? A ASP 5 ? A ASP 5 ? 1_555 CA ? B CA . ? A CA 101 ? 1_555 O ? A GLY 6 ? A GLY 6 ? 1_555 89.3 ? 25 O ? A DNP 2 ? A DNP 2 ? 1_555 CA ? B CA . ? A CA 101 ? 1_555 O ? A GLY 8 ? A GLY 8 ? 1_555 167.7 ? 26 OD1 ? A ASP 5 ? A ASP 5 ? 1_555 CA ? B CA . ? A CA 101 ? 1_555 O ? A GLY 8 ? A GLY 8 ? 1_555 96.8 ? 27 O ? A GLY 6 ? A GLY 6 ? 1_555 CA ? B CA . ? A CA 101 ? 1_555 O ? A GLY 8 ? A GLY 8 ? 1_555 91.6 ? 28 O ? A DNP 2 ? A DNP 2 ? 1_555 CA ? B CA . ? A CA 101 ? 1_555 O ? A ILE 10 ? A ILE 10 ? 1_555 80.4 ? 29 OD1 ? A ASP 5 ? A ASP 5 ? 1_555 CA ? B CA . ? A CA 101 ? 1_555 O ? A ILE 10 ? A ILE 10 ? 1_555 90.4 ? 30 O ? A GLY 6 ? A GLY 6 ? 1_555 CA ? B CA . ? A CA 101 ? 1_555 O ? A ILE 10 ? A ILE 10 ? 1_555 178.9 ? 31 O ? A GLY 8 ? A GLY 8 ? 1_555 CA ? B CA . ? A CA 101 ? 1_555 O ? A ILE 10 ? A ILE 10 ? 1_555 87.4 ? 32 O ? A DNP 2 ? A DNP 2 ? 1_555 CA ? B CA . ? A CA 101 ? 1_555 O3 A D RDZ . ? A RDZ 103 ? 1_555 87.5 ? 33 OD1 ? A ASP 5 ? A ASP 5 ? 1_555 CA ? B CA . ? A CA 101 ? 1_555 O3 A D RDZ . ? A RDZ 103 ? 1_555 172.6 ? 34 O ? A GLY 6 ? A GLY 6 ? 1_555 CA ? B CA . ? A CA 101 ? 1_555 O3 A D RDZ . ? A RDZ 103 ? 1_555 91.9 ? 35 O ? A GLY 8 ? A GLY 8 ? 1_555 CA ? B CA . ? A CA 101 ? 1_555 O3 A D RDZ . ? A RDZ 103 ? 1_555 90.5 ? 36 O ? A ILE 10 ? A ILE 10 ? 1_555 CA ? B CA . ? A CA 101 ? 1_555 O3 A D RDZ . ? A RDZ 103 ? 1_555 88.5 ? 37 O ? A DNP 2 ? A DNP 2 ? 1_555 CA ? B CA . ? A CA 101 ? 1_555 O3 B D RDZ . ? A RDZ 103 ? 1_555 85.8 ? 38 OD1 ? A ASP 5 ? A ASP 5 ? 1_555 CA ? B CA . ? A CA 101 ? 1_555 O3 B D RDZ . ? A RDZ 103 ? 1_555 170.4 ? 39 O ? A GLY 6 ? A GLY 6 ? 1_555 CA ? B CA . ? A CA 101 ? 1_555 O3 B D RDZ . ? A RDZ 103 ? 1_555 89.3 ? 40 O ? A GLY 8 ? A GLY 8 ? 1_555 CA ? B CA . ? A CA 101 ? 1_555 O3 B D RDZ . ? A RDZ 103 ? 1_555 92.8 ? 41 O ? A ILE 10 ? A ILE 10 ? 1_555 CA ? B CA . ? A CA 101 ? 1_555 O3 B D RDZ . ? A RDZ 103 ? 1_555 91.2 ? 42 O3 A D RDZ . ? A RDZ 103 ? 1_555 CA ? B CA . ? A CA 101 ? 1_555 O3 B D RDZ . ? A RDZ 103 ? 1_555 3.4 ? # _pdbx_entry_details.entry_id 7AG5 _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 2RA C C N N 1 2RA N N N N 2 2RA O O N N 3 2RA CA C N R 4 2RA CB C N N 5 2RA NG N N N 6 2RA OXT O N N 7 2RA H H N N 8 2RA H2 H N N 9 2RA HA H N N 10 2RA HB1 H N N 11 2RA HB2 H N N 12 2RA HG1 H N N 13 2RA HG2 H N N 14 2RA HXT H N N 15 9GE C C N N 16 9GE O O N N 17 9GE CA C N N 18 9GE C04 C N N 19 9GE C05 C N N 20 9GE C06 C N N 21 9GE O1 O N N 22 9GE H1 H N N 23 9GE H2 H N N 24 9GE H3 H N N 25 9GE H4 H N N 26 9GE H5 H N N 27 9GE H6 H N N 28 9GE H8 H N N 29 9GE C1 C N N 30 9GE C2 C N N 31 9GE C3 C N N 32 9GE C4 C N N 33 9GE C5 C N N 34 9GE C6 C N N 35 9GE C7 C N N 36 9GE C8 C N N 37 9GE C9 C N N 38 9GE C10 C N N 39 9GE H7 H N N 40 9GE H9 H N N 41 9GE H10 H N N 42 9GE H11 H N N 43 9GE H12 H N N 44 9GE H13 H N N 45 9GE H14 H N N 46 9GE H15 H N N 47 9GE H16 H N N 48 9GE H17 H N N 49 9GE H18 H N N 50 9GE H19 H N N 51 9GE H20 H N N 52 9GE H21 H N N 53 9GE H22 H N N 54 9GE H23 H N N 55 9GE H24 H N N 56 9GE H25 H N N 57 9GE H26 H N N 58 9GE H27 H N N 59 9GE H28 H N N 60 ASP N N N N 61 ASP CA C N S 62 ASP C C N N 63 ASP O O N N 64 ASP CB C N N 65 ASP CG C N N 66 ASP OD1 O N N 67 ASP OD2 O N N 68 ASP OXT O N N 69 ASP H H N N 70 ASP H2 H N N 71 ASP HA H N N 72 ASP HB2 H N N 73 ASP HB3 H N N 74 ASP HD2 H N N 75 ASP HXT H N N 76 CA CA CA N N 77 CPI N N N N 78 CPI CE C N N 79 CPI CD C N N 80 CPI CG C N N 81 CPI CB C N N 82 CPI CA C N R 83 CPI C C N N 84 CPI O O N N 85 CPI H H N N 86 CPI HE2 H N N 87 CPI HE3 H N N 88 CPI HD2 H N N 89 CPI HD3 H N N 90 CPI HG2 H N N 91 CPI HG3 H N N 92 CPI HB2 H N N 93 CPI HB3 H N N 94 CPI HA H N N 95 CPI OXT O N N 96 CPI HXT H N N 97 DNP N N N N 98 DNP CA C N S 99 DNP CB C N N 100 DNP NG N N N 101 DNP C C N N 102 DNP O O N N 103 DNP OXT O N N 104 DNP H H N N 105 DNP H2 H N N 106 DNP HA H N N 107 DNP HB2 H N N 108 DNP HB3 H N N 109 DNP HG1 H N N 110 DNP HG2 H N N 111 DNP HG3 H N N 112 DNP HXT H N N 113 GLY N N N N 114 GLY CA C N N 115 GLY C C N N 116 GLY O O N N 117 GLY OXT O N N 118 GLY H H N N 119 GLY H2 H N N 120 GLY HA2 H N N 121 GLY HA3 H N N 122 GLY HXT H N N 123 HOH O O N N 124 HOH H1 H N N 125 HOH H2 H N N 126 ILE N N N N 127 ILE CA C N S 128 ILE C C N N 129 ILE O O N N 130 ILE CB C N S 131 ILE CG1 C N N 132 ILE CG2 C N N 133 ILE CD1 C N N 134 ILE OXT O N N 135 ILE H H N N 136 ILE H2 H N N 137 ILE HA H N N 138 ILE HB H N N 139 ILE HG12 H N N 140 ILE HG13 H N N 141 ILE HG21 H N N 142 ILE HG22 H N N 143 ILE HG23 H N N 144 ILE HD11 H N N 145 ILE HD12 H N N 146 ILE HD13 H N N 147 ILE HXT H N N 148 PRO N N N N 149 PRO CA C N S 150 PRO C C N N 151 PRO O O N N 152 PRO CB C N N 153 PRO CG C N N 154 PRO CD C N N 155 PRO OXT O N N 156 PRO H H N N 157 PRO HA H N N 158 PRO HB2 H N N 159 PRO HB3 H N N 160 PRO HG2 H N N 161 PRO HG3 H N N 162 PRO HD2 H N N 163 PRO HD3 H N N 164 PRO HXT H N N 165 RDZ C1 C N N 166 RDZ C2 C N N 167 RDZ C3 C N N 168 RDZ C4 C N N 169 RDZ C5 C N N 170 RDZ C6 C N N 171 RDZ C7 C N N 172 RDZ C8 C N N 173 RDZ O1 O N N 174 RDZ P1 P N N 175 RDZ O2 O N N 176 RDZ O3 O N N 177 RDZ O4 O N N 178 RDZ C9 C N N 179 RDZ C10 C N N 180 RDZ H2 H N N 181 RDZ H3 H N N 182 RDZ H1 H N N 183 RDZ H4 H N N 184 RDZ H5 H N N 185 RDZ H6 H N N 186 RDZ H7 H N N 187 RDZ H8 H N N 188 RDZ H9 H N N 189 RDZ H10 H N N 190 RDZ H11 H N N 191 RDZ H22 H N N 192 RDZ H23 H N N 193 RDZ H13 H N N 194 RDZ H14 H N N 195 RDZ H12 H N N 196 RDZ H16 H N N 197 RDZ H17 H N N 198 RDZ H15 H N N 199 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2RA C O doub N N 1 2RA C CA sing N N 2 2RA C OXT sing N N 3 2RA N CA sing N N 4 2RA CA CB sing N N 5 2RA CB NG sing N N 6 2RA N H sing N N 7 2RA N H2 sing N N 8 2RA CA HA sing N N 9 2RA CB HB1 sing N N 10 2RA CB HB2 sing N N 11 2RA NG HG1 sing N N 12 2RA NG HG2 sing N N 13 2RA OXT HXT sing N N 14 9GE C06 C05 sing N N 15 9GE C05 C04 sing N N 16 9GE C04 CA doub N E 17 9GE CA C sing N N 18 9GE C O doub N N 19 9GE C O1 sing N N 20 9GE CA H1 sing N N 21 9GE C04 H2 sing N N 22 9GE C05 H3 sing N N 23 9GE C05 H4 sing N N 24 9GE C06 H5 sing N N 25 9GE C06 H6 sing N N 26 9GE O1 H8 sing N N 27 9GE C06 C1 sing N N 28 9GE C1 C2 sing N N 29 9GE C2 C3 sing N N 30 9GE C3 C4 sing N N 31 9GE C4 C5 sing N N 32 9GE C5 C6 sing N N 33 9GE C6 C7 sing N N 34 9GE C7 C8 sing N N 35 9GE C8 C9 sing N N 36 9GE C8 C10 sing N N 37 9GE C1 H7 sing N N 38 9GE C1 H9 sing N N 39 9GE C2 H10 sing N N 40 9GE C2 H11 sing N N 41 9GE C3 H12 sing N N 42 9GE C3 H13 sing N N 43 9GE C4 H14 sing N N 44 9GE C4 H15 sing N N 45 9GE C5 H16 sing N N 46 9GE C5 H17 sing N N 47 9GE C6 H18 sing N N 48 9GE C6 H19 sing N N 49 9GE C7 H20 sing N N 50 9GE C7 H21 sing N N 51 9GE C8 H22 sing N N 52 9GE C9 H23 sing N N 53 9GE C9 H24 sing N N 54 9GE C9 H25 sing N N 55 9GE C10 H26 sing N N 56 9GE C10 H27 sing N N 57 9GE C10 H28 sing N N 58 ASP N CA sing N N 59 ASP N H sing N N 60 ASP N H2 sing N N 61 ASP CA C sing N N 62 ASP CA CB sing N N 63 ASP CA HA sing N N 64 ASP C O doub N N 65 ASP C OXT sing N N 66 ASP CB CG sing N N 67 ASP CB HB2 sing N N 68 ASP CB HB3 sing N N 69 ASP CG OD1 doub N N 70 ASP CG OD2 sing N N 71 ASP OD2 HD2 sing N N 72 ASP OXT HXT sing N N 73 CPI N CE sing N N 74 CPI N CA sing N N 75 CPI N H sing N N 76 CPI CE CD sing N N 77 CPI CE HE2 sing N N 78 CPI CE HE3 sing N N 79 CPI CD CG sing N N 80 CPI CD HD2 sing N N 81 CPI CD HD3 sing N N 82 CPI CG CB sing N N 83 CPI CG HG2 sing N N 84 CPI CG HG3 sing N N 85 CPI CB CA sing N N 86 CPI CB HB2 sing N N 87 CPI CB HB3 sing N N 88 CPI CA C sing N N 89 CPI CA HA sing N N 90 CPI C O doub N N 91 CPI C OXT sing N N 92 CPI OXT HXT sing N N 93 DNP N CA sing N N 94 DNP N H sing N N 95 DNP N H2 sing N N 96 DNP CA CB sing N N 97 DNP CA C sing N N 98 DNP CA HA sing N N 99 DNP CB NG sing N N 100 DNP CB HB2 sing N N 101 DNP CB HB3 sing N N 102 DNP NG HG1 sing N N 103 DNP NG HG2 sing N N 104 DNP NG HG3 sing N N 105 DNP C O doub N N 106 DNP C OXT sing N N 107 DNP OXT HXT sing N N 108 GLY N CA sing N N 109 GLY N H sing N N 110 GLY N H2 sing N N 111 GLY CA C sing N N 112 GLY CA HA2 sing N N 113 GLY CA HA3 sing N N 114 GLY C O doub N N 115 GLY C OXT sing N N 116 GLY OXT HXT sing N N 117 HOH O H1 sing N N 118 HOH O H2 sing N N 119 ILE N CA sing N N 120 ILE N H sing N N 121 ILE N H2 sing N N 122 ILE CA C sing N N 123 ILE CA CB sing N N 124 ILE CA HA sing N N 125 ILE C O doub N N 126 ILE C OXT sing N N 127 ILE CB CG1 sing N N 128 ILE CB CG2 sing N N 129 ILE CB HB sing N N 130 ILE CG1 CD1 sing N N 131 ILE CG1 HG12 sing N N 132 ILE CG1 HG13 sing N N 133 ILE CG2 HG21 sing N N 134 ILE CG2 HG22 sing N N 135 ILE CG2 HG23 sing N N 136 ILE CD1 HD11 sing N N 137 ILE CD1 HD12 sing N N 138 ILE CD1 HD13 sing N N 139 ILE OXT HXT sing N N 140 PRO N CA sing N N 141 PRO N CD sing N N 142 PRO N H sing N N 143 PRO CA C sing N N 144 PRO CA CB sing N N 145 PRO CA HA sing N N 146 PRO C O doub N N 147 PRO C OXT sing N N 148 PRO CB CG sing N N 149 PRO CB HB2 sing N N 150 PRO CB HB3 sing N N 151 PRO CG CD sing N N 152 PRO CG HG2 sing N N 153 PRO CG HG3 sing N N 154 PRO CD HD2 sing N N 155 PRO CD HD3 sing N N 156 PRO OXT HXT sing N N 157 RDZ C10 C2 sing N N 158 RDZ C1 C2 sing N N 159 RDZ C2 C3 doub N N 160 RDZ C3 C4 sing N N 161 RDZ C5 C4 sing N N 162 RDZ C5 C6 sing N N 163 RDZ C6 C9 sing N N 164 RDZ C6 C7 doub N E 165 RDZ C7 C8 sing N N 166 RDZ C8 O1 sing N N 167 RDZ O1 P1 sing N N 168 RDZ P1 O4 doub N N 169 RDZ P1 O3 sing N N 170 RDZ P1 O2 sing N N 171 RDZ C1 H2 sing N N 172 RDZ C1 H3 sing N N 173 RDZ C1 H1 sing N N 174 RDZ C3 H4 sing N N 175 RDZ C4 H5 sing N N 176 RDZ C4 H6 sing N N 177 RDZ C5 H7 sing N N 178 RDZ C5 H8 sing N N 179 RDZ C7 H9 sing N N 180 RDZ C8 H10 sing N N 181 RDZ C8 H11 sing N N 182 RDZ O2 H22 sing N N 183 RDZ O3 H23 sing N N 184 RDZ C9 H13 sing N N 185 RDZ C9 H14 sing N N 186 RDZ C9 H12 sing N N 187 RDZ C10 H16 sing N N 188 RDZ C10 H17 sing N N 189 RDZ C10 H15 sing N N 190 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 5O0Z _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 7AG5 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.024735 _atom_sites.fract_transf_matrix[1][2] 0.014281 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.028562 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.032224 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C CA H N O P # loop_