HEADER SUGAR BINDING PROTEIN 23-SEP-20 7AGO TITLE CRYSTAL STRUCTURE OF THE N-ACETYLMURAMYL-L-ALANINE AMIDASE, AMI1, FROM TITLE 2 MYCOBACTERIUM ABSCESSUS BOUND TO L-ALANINE-D-ISOGLUTAMINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-ACETYLMURAMOYL-L-ALANINE AMIDASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTEROIDES ABSCESSUS; SOURCE 3 ORGANISM_TAXID: 36809; SOURCE 4 GENE: D2E76_07740; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS AMIDASE, PEPTIDOGLYCAN, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.BLAISE REVDAT 3 31-JAN-24 7AGO 1 REMARK REVDAT 2 15-NOV-23 7AGO 1 ATOM REVDAT 1 18-NOV-20 7AGO 0 JRNL AUTH T.KUSSAU,N.VAN WYK,M.D.JOHANSEN,H.M.A.B.ALSARRAF,A.NEYRET, JRNL AUTH 2 C.HAMELA,K.K.SORENSEN,M.B.THYGESEN,C.BEAUVINEAU,L.KREMER, JRNL AUTH 3 M.BLAISE JRNL TITL FUNCTIONAL CHARACTERIZATION OF THE N JRNL TITL 2 -ACETYLMURAMYL-L-ALANINE AMIDASE, AMI1, FROM MYCOBACTERIUM JRNL TITL 3 ABSCESSUS . JRNL REF CELLS V. 9 2020 JRNL REFN ESSN 2073-4409 JRNL PMID 33158165 JRNL DOI 10.3390/CELLS9112410 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15RC3_3435 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.30 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 31538 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.340 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.3000 - 4.1000 1.00 2296 155 0.1540 0.1775 REMARK 3 2 4.1000 - 3.2500 1.00 2164 147 0.1496 0.1521 REMARK 3 3 3.2500 - 2.8400 1.00 2141 145 0.1669 0.1842 REMARK 3 4 2.8400 - 2.5800 1.00 2119 143 0.1540 0.1712 REMARK 3 5 2.5800 - 2.4000 1.00 2109 143 0.1507 0.1700 REMARK 3 6 2.4000 - 2.2500 0.99 2083 142 0.1574 0.1970 REMARK 3 7 2.2500 - 2.1400 0.99 2083 140 0.1568 0.1973 REMARK 3 8 2.1400 - 2.0500 1.00 2081 141 0.1461 0.1938 REMARK 3 9 2.0500 - 1.9700 1.00 2096 142 0.1503 0.1729 REMARK 3 10 1.9700 - 1.9000 1.00 2062 140 0.1965 0.2657 REMARK 3 11 1.9000 - 1.8400 1.00 2080 141 0.2020 0.2326 REMARK 3 12 1.8400 - 1.7900 1.00 2067 140 0.2020 0.2499 REMARK 3 13 1.7900 - 1.7400 1.00 2076 141 0.2303 0.2550 REMARK 3 14 1.7400 - 1.7000 1.00 2081 140 0.2679 0.3119 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.186 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.641 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.97 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1659 REMARK 3 ANGLE : 0.769 2257 REMARK 3 CHIRALITY : 0.048 250 REMARK 3 PLANARITY : 0.005 308 REMARK 3 DIHEDRAL : 10.773 998 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 14 THROUGH 38 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.4384 22.3862 -15.4363 REMARK 3 T TENSOR REMARK 3 T11: 0.1224 T22: 0.1661 REMARK 3 T33: 0.1320 T12: 0.0062 REMARK 3 T13: -0.0256 T23: -0.0126 REMARK 3 L TENSOR REMARK 3 L11: 0.6495 L22: 2.5959 REMARK 3 L33: 1.5415 L12: 0.5611 REMARK 3 L13: 0.4327 L23: -1.1399 REMARK 3 S TENSOR REMARK 3 S11: -0.0521 S12: -0.0064 S13: -0.1042 REMARK 3 S21: 0.0010 S22: -0.0318 S23: 0.0711 REMARK 3 S31: 0.0912 S32: 0.0797 S33: 0.2144 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 39 THROUGH 59 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.8209 19.7330 -6.3365 REMARK 3 T TENSOR REMARK 3 T11: 0.2120 T22: 0.2206 REMARK 3 T33: 0.1771 T12: -0.0023 REMARK 3 T13: -0.0129 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.3612 L22: 4.1945 REMARK 3 L33: 1.4816 L12: 1.1575 REMARK 3 L13: 0.6946 L23: 2.5058 REMARK 3 S TENSOR REMARK 3 S11: 0.0448 S12: -0.0495 S13: -0.0176 REMARK 3 S21: 0.1625 S22: -0.0398 S23: 0.0453 REMARK 3 S31: 0.1132 S32: -0.0227 S33: -0.1608 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 60 THROUGH 95 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.6550 31.5662 -18.4112 REMARK 3 T TENSOR REMARK 3 T11: 0.1450 T22: 0.1235 REMARK 3 T33: 0.1287 T12: 0.0055 REMARK 3 T13: -0.0180 T23: 0.0076 REMARK 3 L TENSOR REMARK 3 L11: 3.4170 L22: 1.2291 REMARK 3 L33: 2.9003 L12: 0.2792 REMARK 3 L13: -1.6249 L23: -0.0048 REMARK 3 S TENSOR REMARK 3 S11: -0.0005 S12: 0.1785 S13: 0.1486 REMARK 3 S21: -0.0759 S22: 0.0236 S23: -0.0397 REMARK 3 S31: -0.1441 S32: -0.0746 S33: -0.0575 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 96 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.1699 19.4236 -21.7956 REMARK 3 T TENSOR REMARK 3 T11: 0.1594 T22: 0.1774 REMARK 3 T33: 0.1546 T12: -0.0021 REMARK 3 T13: -0.0436 T23: -0.0202 REMARK 3 L TENSOR REMARK 3 L11: 2.8036 L22: 6.4480 REMARK 3 L33: 8.2279 L12: 3.0931 REMARK 3 L13: -4.6813 L23: -5.9000 REMARK 3 S TENSOR REMARK 3 S11: -0.0518 S12: 0.2197 S13: -0.0428 REMARK 3 S21: -0.0986 S22: 0.1256 S23: 0.1376 REMARK 3 S31: 0.2580 S32: -0.3131 S33: -0.0099 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 107 THROUGH 205 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.2896 18.3615 -14.3489 REMARK 3 T TENSOR REMARK 3 T11: 0.1557 T22: 0.1832 REMARK 3 T33: 0.1695 T12: 0.0086 REMARK 3 T13: 0.0002 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 1.0294 L22: 1.1451 REMARK 3 L33: 1.2351 L12: 0.1719 REMARK 3 L13: 0.5617 L23: 0.5848 REMARK 3 S TENSOR REMARK 3 S11: 0.0195 S12: 0.1212 S13: -0.1153 REMARK 3 S21: -0.0056 S22: 0.0391 S23: -0.0731 REMARK 3 S31: 0.0266 S32: 0.0960 S33: -0.0709 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 206 THROUGH 227 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.6404 29.1454 -20.4169 REMARK 3 T TENSOR REMARK 3 T11: 0.1455 T22: 0.2142 REMARK 3 T33: 0.1657 T12: -0.0285 REMARK 3 T13: 0.0109 T23: 0.0218 REMARK 3 L TENSOR REMARK 3 L11: 1.4457 L22: 4.8861 REMARK 3 L33: 7.8714 L12: 1.2970 REMARK 3 L13: 1.6657 L23: 4.2344 REMARK 3 S TENSOR REMARK 3 S11: -0.0079 S12: 0.2393 S13: 0.0017 REMARK 3 S21: -0.2009 S22: 0.2210 S23: -0.4120 REMARK 3 S31: -0.2319 S32: 0.4036 S33: -0.2955 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7AGO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-SEP-20. REMARK 100 THE DEPOSITION ID IS D_1292111398. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-FEB-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31543 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 26.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7AGL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PH 5.5, 1.6 M AMMONIUM REMARK 280 SULFATE, 1% (W/V) PEG 3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.81500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 42.87000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 42.87000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 18.90750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 42.87000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 42.87000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 56.72250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 42.87000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 42.87000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 18.90750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 42.87000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 42.87000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 56.72250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 37.81500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 477 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 511 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 616 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 10 REMARK 465 ALA A 11 REMARK 465 PRO A 12 REMARK 465 GLY A 13 REMARK 465 ALA A 228 REMARK 465 PRO A 229 REMARK 465 ALA A 230 REMARK 465 ALA A 231 REMARK 465 ALA A 232 REMARK 465 PRO A 233 REMARK 465 ALA A 234 REMARK 465 PRO A 235 REMARK 465 GLU A 236 REMARK 465 ALA A 237 REMARK 465 ALA A 238 REMARK 465 PRO A 239 REMARK 465 ALA A 240 REMARK 465 GLY A 241 REMARK 465 GLY A 242 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 25 177.62 70.39 REMARK 500 ARG A 41 49.68 -143.14 REMARK 500 THR A 52 -161.18 -100.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 642 DISTANCE = 5.88 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 25 NE2 REMARK 620 2 GLU A 60 OE1 93.3 REMARK 620 3 HIS A 115 ND1 99.3 101.2 REMARK 620 4 HOH A 433 O 149.0 89.8 110.3 REMARK 620 N 1 2 3 DBREF1 7AGO A 11 242 UNP A0A418LHZ8_9MYCO DBREF2 7AGO A A0A418LHZ8 41 272 SEQADV 7AGO GLY A 10 UNP A0A418LHZ EXPRESSION TAG SEQRES 1 A 233 GLY ALA PRO GLY ILE ALA GLY ARG ILE VAL VAL LEU ASP SEQRES 2 A 233 PRO GLY HIS ASN GLY ALA ASN ASP SER SER ILE ASN ASN SEQRES 3 A 233 GLN VAL PRO ASP GLY ARG GLY GLY THR LYS SER CYS GLN SEQRES 4 A 233 THR SER GLY THR ALA THR ASP GLY GLY TYR PRO GLU HIS SEQRES 5 A 233 THR PHE THR TRP ASN THR VAL LEU LEU ILE ARG GLN GLN SEQRES 6 A 233 LEU THR GLN LEU GLY VAL ARG THR ALA MET THR ARG GLY SEQRES 7 A 233 ASP ASP ASN LYS LEU GLY PRO CYS ILE ASP LYS ARG ALA SEQRES 8 A 233 GLU ILE GLU ASN SER TYR ASN PRO ASP ALA VAL VAL SER SEQRES 9 A 233 ILE HIS ALA ASP GLY GLY PRO ALA GLY GLY HIS GLY PHE SEQRES 10 A 233 HIS VAL ASN TYR SER ASN PRO PRO VAL ASN ALA VAL GLN SEQRES 11 A 233 GLY GLU PRO THR LEU ARG PHE ALA LYS THR MET ARG ASP SEQRES 12 A 233 SER LEU GLN ALA ALA GLY LEU THR PRO ALA THR TYR ILE SEQRES 13 A 233 GLY THR GLY GLY LEU TYR GLY ARG SER ASP LEU ALA GLY SEQRES 14 A 233 LEU ASN LEU ALA GLN HIS PRO LYS VAL LEU VAL GLU LEU SEQRES 15 A 233 GLY ASN MET LYS ASN ALA GLN ASP SER ALA MET MET THR SEQRES 16 A 233 SER PRO GLU GLY ARG SER LYS TYR ALA GLN ALA VAL VAL SEQRES 17 A 233 GLN GLY ILE VAL ALA TYR LEU SER GLY THR ALA PRO ALA SEQRES 18 A 233 ALA ALA PRO ALA PRO GLU ALA ALA PRO ALA GLY GLY HET ZGL A 301 10 HET ALA A 302 5 HET ZN A 303 1 HETNAM ZGL D-ALPHA-GLUTAMINE HETNAM ALA ALANINE HETNAM ZN ZINC ION HETSYN ZGL ISO-D-GLUTAMINE FORMUL 2 ZGL C5 H10 N2 O3 FORMUL 3 ALA C3 H7 N O2 FORMUL 4 ZN ZN 2+ FORMUL 5 HOH *242(H2 O) HELIX 1 AA1 ASP A 30 ASN A 34 5 5 HELIX 2 AA2 PRO A 59 LEU A 78 1 20 HELIX 3 AA3 CYS A 95 TYR A 106 1 12 HELIX 4 AA4 GLY A 140 ALA A 157 1 18 HELIX 5 AA5 LEU A 176 LEU A 181 1 6 HELIX 6 AA6 ASN A 196 SER A 205 1 10 HELIX 7 AA7 SER A 205 GLY A 226 1 22 SHEET 1 AA1 6 ARG A 81 MET A 84 0 SHEET 2 AA1 6 ILE A 18 PRO A 23 1 N VAL A 19 O ARG A 81 SHEET 3 AA1 6 ALA A 110 ASP A 117 1 O ILE A 114 N ASP A 22 SHEET 4 AA1 6 LYS A 186 ASN A 193 1 O GLY A 192 N ASP A 117 SHEET 5 AA1 6 HIS A 127 SER A 131 -1 N ASN A 129 O LEU A 188 SHEET 6 AA1 6 LEU A 170 ARG A 173 1 O ARG A 173 N TYR A 130 SHEET 1 AA2 2 GLN A 36 PRO A 38 0 SHEET 2 AA2 2 THR A 44 SER A 46 -1 O LYS A 45 N VAL A 37 SSBOND 1 CYS A 47 CYS A 95 1555 1555 2.05 LINK N ZGL A 301 C ALA A 302 1555 1555 1.33 LINK NE2 HIS A 25 ZN ZN A 303 1555 1555 2.07 LINK OE1 GLU A 60 ZN ZN A 303 1555 1555 2.02 LINK ND1 HIS A 115 ZN ZN A 303 1555 1555 2.11 LINK ZN ZN A 303 O HOH A 433 1555 1555 2.11 CISPEP 1 ASN A 132 PRO A 133 0 -3.95 CRYST1 85.740 85.740 75.630 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011663 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011663 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013222 0.00000