HEADER TRANSFERASE 01-OCT-20 7AKH TITLE STRUCTURE OF DYRK2 IN COMPLEX WITH COMPOUND 58 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DUAL SPECIFICITY TYROSINE-PHOSPHORYLATION-REGULATED KINASE COMPND 3 2; COMPND 4 CHAIN: A; COMPND 5 EC: 2.7.12.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DYRK2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: PLYSS KEYWDS SERINE/THREONINE-PROTEIN KINASE, PHOSPHOPROTEIN, KINASE SELECTIVITY, KEYWDS 2 TRANSFERASE, SBDD, SMALL MOLECULE INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR P.DOKURNO,A.E.SURGENOR,A.KOTSCHY REVDAT 3 31-JAN-24 7AKH 1 REMARK REVDAT 2 09-JUN-21 7AKH 1 JRNL REVDAT 1 26-MAY-21 7AKH 0 JRNL AUTH C.WEBER,M.SIPOS,A.PACZAL,B.BALINT,V.KUN,N.FOLOPPE,P.DOKURNO, JRNL AUTH 2 A.J.MASSEY,D.L.WALMSLEY,R.E.HUBBARD,J.MURRAY,K.BENWELL, JRNL AUTH 3 T.EDMONDS,D.DEMARLES,A.BRUNO,M.BURBRIDGE,F.CRUZALEGUI, JRNL AUTH 4 A.KOTSCHY JRNL TITL STRUCTURE-GUIDED DISCOVERY OF POTENT AND SELECTIVE DYRK1A JRNL TITL 2 INHIBITORS. JRNL REF J.MED.CHEM. V. 64 6745 2021 JRNL REFN ISSN 0022-2623 JRNL PMID 33975430 JRNL DOI 10.1021/ACS.JMEDCHEM.1C00023 REMARK 2 REMARK 2 RESOLUTION. 2.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 12548 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 655 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1771 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.2790 REMARK 3 BIN FREE R VALUE SET COUNT : 93 REMARK 3 BIN FREE R VALUE : 0.3290 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3185 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 22 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 69.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.26000 REMARK 3 B22 (A**2) : 2.26000 REMARK 3 B33 (A**2) : -4.53000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.361 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.289 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.401 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3293 ; 0.009 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2976 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4460 ; 1.591 ; 1.642 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6893 ; 1.274 ; 1.574 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 401 ; 5.632 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 175 ;33.481 ;21.943 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 550 ;21.301 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;25.309 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 404 ; 0.064 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3690 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 708 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7AKH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-OCT-20. REMARK 100 THE DEPOSITION ID IS D_1292111531. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JAN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13805 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.810 REMARK 200 RESOLUTION RANGE LOW (A) : 84.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.81 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.87400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3K2L REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 4K, 0.1M TRIS BUFFER PH 8.5, REMARK 280 0.1M LI SULPHATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 42.12000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 42.12000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 75.03000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 42.12000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 42.12000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 75.03000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 42.12000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 42.12000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 75.03000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 42.12000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 42.12000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 75.03000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 124 REMARK 465 HIS A 125 REMARK 465 HIS A 126 REMARK 465 HIS A 127 REMARK 465 HIS A 128 REMARK 465 HIS A 129 REMARK 465 HIS A 130 REMARK 465 SER A 131 REMARK 465 SER A 132 REMARK 465 GLY A 133 REMARK 465 ARG A 536 REMARK 465 ARG A 537 REMARK 465 ARG A 538 REMARK 465 LEU A 539 REMARK 465 PRO A 540 REMARK 465 LYS A 541 REMARK 465 PRO A 542 REMARK 465 PRO A 543 REMARK 465 THR A 544 REMARK 465 GLY A 545 REMARK 465 GLU A 546 REMARK 465 LYS A 547 REMARK 465 THR A 548 REMARK 465 SER A 549 REMARK 465 VAL A 550 REMARK 465 LYS A 551 REMARK 465 ARG A 552 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 144 CG CD OE1 NE2 REMARK 470 MET A 146 CG SD CE REMARK 470 LYS A 150 CG CD CE NZ REMARK 470 LYS A 161 CG CD CE NZ REMARK 470 LYS A 189 CG CD CE NZ REMARK 470 GLN A 207 CG CD OE1 NE2 REMARK 470 LYS A 257 CG CD CE NZ REMARK 470 ARG A 258 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 261 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 278 CG CD CE NZ REMARK 470 LYS A 316 CG CD CE NZ REMARK 470 LYS A 453 CG CD CE NZ REMARK 470 LYS A 459 CG CD CE NZ REMARK 470 TYR A 461 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 501 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 139 NH1 ARG A 361 6555 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 221 -32.32 -139.52 REMARK 500 LEU A 225 -70.92 -114.26 REMARK 500 LEU A 304 -160.53 -117.12 REMARK 500 SER A 305 -150.10 -112.97 REMARK 500 CYS A 347 -0.93 81.07 REMARK 500 ASP A 348 43.50 -147.70 REMARK 500 ASP A 368 81.66 52.21 REMARK 500 GLN A 384 150.47 72.60 REMARK 500 ARG A 398 99.73 -61.88 REMARK 500 PRO A 402 -16.93 -49.34 REMARK 500 GLU A 492 13.14 57.49 REMARK 500 LEU A 500 30.99 -98.45 REMARK 500 ASP A 505 113.77 -167.55 REMARK 500 LEU A 516 35.98 -97.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7AJ2 RELATED DB: PDB REMARK 900 RELATED ID: 7AJ4 RELATED DB: PDB REMARK 900 RELATED ID: 7AJ5 RELATED DB: PDB REMARK 900 RELATED ID: 7AJ7 RELATED DB: PDB REMARK 900 RELATED ID: 7AJ8 RELATED DB: PDB REMARK 900 RELATED ID: 7AJA RELATED DB: PDB REMARK 900 RELATED ID: 7AJM RELATED DB: PDB REMARK 900 RELATED ID: 7AJS RELATED DB: PDB REMARK 900 RELATED ID: 7AJV RELATED DB: PDB REMARK 900 RELATED ID: 7AJW RELATED DB: PDB REMARK 900 RELATED ID: 7AJY RELATED DB: PDB REMARK 900 RELATED ID: 7AK2 RELATED DB: PDB REMARK 900 RELATED ID: 7AKA RELATED DB: PDB REMARK 900 RELATED ID: 7AKB RELATED DB: PDB REMARK 900 RELATED ID: 7AKE RELATED DB: PDB REMARK 900 RELATED ID: 7AKF RELATED DB: PDB DBREF 7AKH A 146 552 UNP Q92630 DYRK2_HUMAN 146 552 SEQADV 7AKH MET A 124 UNP Q92630 INITIATING METHIONINE SEQADV 7AKH HIS A 125 UNP Q92630 EXPRESSION TAG SEQADV 7AKH HIS A 126 UNP Q92630 EXPRESSION TAG SEQADV 7AKH HIS A 127 UNP Q92630 EXPRESSION TAG SEQADV 7AKH HIS A 128 UNP Q92630 EXPRESSION TAG SEQADV 7AKH HIS A 129 UNP Q92630 EXPRESSION TAG SEQADV 7AKH HIS A 130 UNP Q92630 EXPRESSION TAG SEQADV 7AKH SER A 131 UNP Q92630 EXPRESSION TAG SEQADV 7AKH SER A 132 UNP Q92630 EXPRESSION TAG SEQADV 7AKH GLY A 133 UNP Q92630 EXPRESSION TAG SEQADV 7AKH VAL A 134 UNP Q92630 EXPRESSION TAG SEQADV 7AKH ASP A 135 UNP Q92630 EXPRESSION TAG SEQADV 7AKH LEU A 136 UNP Q92630 EXPRESSION TAG SEQADV 7AKH GLY A 137 UNP Q92630 EXPRESSION TAG SEQADV 7AKH THR A 138 UNP Q92630 EXPRESSION TAG SEQADV 7AKH GLU A 139 UNP Q92630 EXPRESSION TAG SEQADV 7AKH ASN A 140 UNP Q92630 EXPRESSION TAG SEQADV 7AKH LEU A 141 UNP Q92630 EXPRESSION TAG SEQADV 7AKH TYR A 142 UNP Q92630 EXPRESSION TAG SEQADV 7AKH PHE A 143 UNP Q92630 EXPRESSION TAG SEQADV 7AKH GLN A 144 UNP Q92630 EXPRESSION TAG SEQADV 7AKH SER A 145 UNP Q92630 EXPRESSION TAG SEQRES 1 A 429 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 429 GLY THR GLU ASN LEU TYR PHE GLN SER MET GLY LYS VAL SEQRES 3 A 429 LYS ALA THR PRO MET THR PRO GLU GLN ALA MET LYS GLN SEQRES 4 A 429 TYR MET GLN LYS LEU THR ALA PHE GLU HIS HIS GLU ILE SEQRES 5 A 429 PHE SER TYR PRO GLU ILE TYR PHE LEU GLY LEU ASN ALA SEQRES 6 A 429 LYS LYS ARG GLN GLY MET THR GLY GLY PRO ASN ASN GLY SEQRES 7 A 429 GLY TYR ASP ASP ASP GLN GLY SER TYR VAL GLN VAL PRO SEQRES 8 A 429 HIS ASP HIS VAL ALA TYR ARG TYR GLU VAL LEU LYS VAL SEQRES 9 A 429 ILE GLY LYS GLY SEP PHE GLY GLN VAL VAL LYS ALA TYR SEQRES 10 A 429 ASP HIS LYS VAL HIS GLN HIS VAL ALA LEU LYS MET VAL SEQRES 11 A 429 ARG ASN GLU LYS ARG PHE HIS ARG GLN ALA ALA GLU GLU SEQRES 12 A 429 ILE ARG ILE LEU GLU HIS LEU ARG LYS GLN ASP LYS ASP SEQRES 13 A 429 ASN THR MET ASN VAL ILE HIS MET LEU GLU ASN PHE THR SEQRES 14 A 429 PHE ARG ASN HIS ILE CYS MET THR PHE GLU LEU LEU SER SEQRES 15 A 429 MET ASN LEU TYR GLU LEU ILE LYS LYS ASN LYS PHE GLN SEQRES 16 A 429 GLY PHE SER LEU PRO LEU VAL ARG LYS PHE ALA HIS SER SEQRES 17 A 429 ILE LEU GLN CYS LEU ASP ALA LEU HIS LYS ASN ARG ILE SEQRES 18 A 429 ILE HIS CYS ASP LEU LYS PRO GLU ASN ILE LEU LEU LYS SEQRES 19 A 429 GLN GLN GLY ARG SER GLY ILE LYS VAL ILE ASP PHE GLY SEQRES 20 A 429 SER SER CYS TYR GLU HIS GLN ARG VAL TYR THR PTR ILE SEQRES 21 A 429 GLN SER ARG PHE TYR ARG ALA PRO GLU VAL ILE LEU GLY SEQRES 22 A 429 ALA ARG TYR GLY MET PRO ILE ASP MET TRP SER LEU GLY SEQRES 23 A 429 CYS ILE LEU ALA GLU LEU LEU THR GLY TYR PRO LEU LEU SEQRES 24 A 429 PRO GLY GLU ASP GLU GLY ASP GLN LEU ALA CYS MET ILE SEQRES 25 A 429 GLU LEU LEU GLY MET PRO SER GLN LYS LEU LEU ASP ALA SEQRES 26 A 429 SER LYS ARG ALA LYS ASN PHE VAL SER SEP LYS GLY TYR SEQRES 27 A 429 PRO ARG TYR CYS THR VAL THR THR LEU SER ASP GLY SER SEQRES 28 A 429 VAL VAL LEU ASN GLY GLY ARG SER ARG ARG GLY LYS LEU SEQRES 29 A 429 ARG GLY PRO PRO GLU SER ARG GLU TRP GLY ASN ALA LEU SEQRES 30 A 429 LYS GLY CYS ASP ASP PRO LEU PHE LEU ASP PHE LEU LYS SEQRES 31 A 429 GLN CYS LEU GLU TRP ASP PRO ALA VAL ARG MET THR PRO SEQRES 32 A 429 GLY GLN ALA LEU ARG HIS PRO TRP LEU ARG ARG ARG LEU SEQRES 33 A 429 PRO LYS PRO PRO THR GLY GLU LYS THR SER VAL LYS ARG MODRES 7AKH SEP A 232 SER MODIFIED RESIDUE MODRES 7AKH PTR A 382 TYR MODIFIED RESIDUE MODRES 7AKH SEP A 458 SER MODIFIED RESIDUE HET SEP A 232 10 HET PTR A 382 16 HET SEP A 458 10 HET RK8 A 601 29 HET CL A 602 1 HETNAM SEP PHOSPHOSERINE HETNAM PTR O-PHOSPHOTYROSINE HETNAM RK8 4-[3-[(2~{S})-2-(6-BROMANYLPYRIDIN-2-YL)OXYPROPYL]-2- HETNAM 2 RK8 METHYL-IMIDAZO[4,5-B]PYRIDIN-5-YL]PYRIDINE-2,6-DIAMINE HETNAM CL CHLORIDE ION HETSYN SEP PHOSPHONOSERINE HETSYN PTR PHOSPHONOTYROSINE FORMUL 1 SEP 2(C3 H8 N O6 P) FORMUL 1 PTR C9 H12 N O6 P FORMUL 2 RK8 C20 H20 BR N7 O FORMUL 3 CL CL 1- FORMUL 4 HOH *22(H2 O) HELIX 1 AA1 ASP A 135 GLU A 139 5 5 HELIX 2 AA2 THR A 155 MET A 164 1 10 HELIX 3 AA3 GLN A 165 LEU A 167 5 3 HELIX 4 AA4 THR A 168 ILE A 175 1 8 HELIX 5 AA5 PHE A 176 TYR A 178 5 3 HELIX 6 AA6 GLY A 197 GLY A 202 1 6 HELIX 7 AA7 GLU A 256 LYS A 275 1 20 HELIX 8 AA8 ASN A 307 ASN A 315 1 9 HELIX 9 AA9 SER A 321 ASN A 342 1 22 HELIX 10 AB1 LYS A 350 GLU A 352 5 3 HELIX 11 AB2 HIS A 376 ARG A 378 5 3 HELIX 12 AB3 SER A 385 ARG A 389 5 5 HELIX 13 AB4 ALA A 390 GLY A 396 1 7 HELIX 14 AB5 MET A 401 GLY A 418 1 18 HELIX 15 AB6 ASP A 426 GLY A 439 1 14 HELIX 16 AB7 SER A 442 ALA A 448 1 7 HELIX 17 AB8 ARG A 451 PHE A 455 5 5 HELIX 18 AB9 GLU A 495 LEU A 500 1 6 HELIX 19 AC1 ASP A 505 LEU A 516 1 12 HELIX 20 AC2 THR A 525 ARG A 531 1 7 SHEET 1 AA1 2 TYR A 142 PHE A 143 0 SHEET 2 AA1 2 VAL A 149 LYS A 150 -1 O LYS A 150 N TYR A 142 SHEET 1 AA2 6 HIS A 217 VAL A 218 0 SHEET 2 AA2 6 TYR A 222 LYS A 230 -1 O TYR A 222 N VAL A 218 SHEET 3 AA2 6 GLY A 234 ASP A 241 -1 O LYS A 238 N LYS A 226 SHEET 4 AA2 6 GLN A 246 VAL A 253 -1 O LEU A 250 N VAL A 237 SHEET 5 AA2 6 HIS A 296 GLU A 302 -1 O MET A 299 N LYS A 251 SHEET 6 AA2 6 MET A 287 PHE A 293 -1 N GLU A 289 O THR A 300 SHEET 1 AA3 2 ILE A 344 ILE A 345 0 SHEET 2 AA3 2 CYS A 373 TYR A 374 -1 O CYS A 373 N ILE A 345 SHEET 1 AA4 2 ILE A 354 LEU A 356 0 SHEET 2 AA4 2 ILE A 364 VAL A 366 -1 O LYS A 365 N LEU A 355 SHEET 1 AA5 3 THR A 466 THR A 469 0 SHEET 2 AA5 3 VAL A 475 ARG A 481 -1 O VAL A 476 N THR A 468 SHEET 3 AA5 3 LEU A 487 ARG A 488 -1 O ARG A 488 N GLY A 480 LINK C GLY A 231 N SEP A 232 1555 1555 1.33 LINK C SEP A 232 N PHE A 233 1555 1555 1.35 LINK C THR A 381 N PTR A 382 1555 1555 1.34 LINK C PTR A 382 N ILE A 383 1555 1555 1.34 LINK C SER A 457 N SEP A 458 1555 1555 1.34 LINK C SEP A 458 N LYS A 459 1555 1555 1.34 CRYST1 84.240 84.240 150.060 90.00 90.00 90.00 P 42 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011871 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011871 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006664 0.00000