HEADER TRANSFERASE 01-OCT-20 7AKL TITLE STRUCTURE OF DYRK1A IN COMPLEX WITH COMPOUND 50 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DUAL SPECIFICITY TYROSINE-PHOSPHORYLATION-REGULATED KINASE COMPND 3 1A; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: DUAL SPECIFICITY YAK1-RELATED KINASE,HP86,PROTEIN KINASE COMPND 6 MINIBRAIN HOMOLOG,HMNB; COMPND 7 EC: 2.7.12.1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DYRK1A, DYRK, MNB, MNBH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: PLYSS KEYWDS SERINE/THREONINE-PROTEIN KINASE, PHOSPHOPROTEIN, KINASE SELECTIVITY, KEYWDS 2 TRANSFERASE, SBDD, SMALL MOLECULE INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR P.DOKURNO,A.E.SURGENOR,A.KOTSCHY REVDAT 3 31-JAN-24 7AKL 1 REMARK REVDAT 2 09-JUN-21 7AKL 1 JRNL REVDAT 1 26-MAY-21 7AKL 0 JRNL AUTH C.WEBER,M.SIPOS,A.PACZAL,B.BALINT,V.KUN,N.FOLOPPE,P.DOKURNO, JRNL AUTH 2 A.J.MASSEY,D.L.WALMSLEY,R.E.HUBBARD,J.MURRAY,K.BENWELL, JRNL AUTH 3 T.EDMONDS,D.DEMARLES,A.BRUNO,M.BURBRIDGE,F.CRUZALEGUI, JRNL AUTH 4 A.KOTSCHY JRNL TITL STRUCTURE-GUIDED DISCOVERY OF POTENT AND SELECTIVE DYRK1A JRNL TITL 2 INHIBITORS. JRNL REF J.MED.CHEM. V. 64 6745 2021 JRNL REFN ISSN 0022-2623 JRNL PMID 33975430 JRNL DOI 10.1021/ACS.JMEDCHEM.1C00023 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 27351 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1464 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.11 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3878 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.01 REMARK 3 BIN R VALUE (WORKING SET) : 0.2160 REMARK 3 BIN FREE R VALUE SET COUNT : 203 REMARK 3 BIN FREE R VALUE : 0.2680 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2673 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 242 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.85000 REMARK 3 B22 (A**2) : 0.85000 REMARK 3 B33 (A**2) : -1.69000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.149 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.141 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.102 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.742 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2755 ; 0.010 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2594 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3721 ; 1.599 ; 1.642 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6005 ; 1.383 ; 1.577 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 327 ; 6.807 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 144 ;33.591 ;21.944 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 494 ;13.632 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;21.849 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 344 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3023 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 593 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7AKL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-OCT-20. REMARK 100 THE DEPOSITION ID IS D_1292111551. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31494 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 29.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.15200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.4 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.71400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2VX3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG3350, 0.1M MES BUFFER PH6.5, REMARK 280 0.2M MGCL2, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.04200 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 40.94400 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 40.94400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 93.06300 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 40.94400 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 40.94400 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 31.02100 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 40.94400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 40.94400 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 93.06300 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 40.94400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.94400 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 31.02100 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 62.04200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 127 REMARK 465 GLY A 128 REMARK 465 SER A 129 REMARK 465 SER A 130 REMARK 465 HIS A 131 REMARK 465 HIS A 132 REMARK 465 HIS A 133 REMARK 465 HIS A 134 REMARK 465 HIS A 135 REMARK 465 HIS A 136 REMARK 465 SER A 137 REMARK 465 SER A 138 REMARK 465 GLY A 139 REMARK 465 LEU A 140 REMARK 465 VAL A 141 REMARK 465 PRO A 142 REMARK 465 ARG A 143 REMARK 465 GLY A 144 REMARK 465 SEP A 145 REMARK 465 HIS A 146 REMARK 465 MET A 147 REMARK 465 GLY A 411 REMARK 465 LYS A 412 REMARK 465 ARG A 413 REMARK 465 GLU A 414 REMARK 465 THR A 482 REMARK 465 ALA A 483 REMARK 465 ASP A 484 REMARK 465 GLU A 485 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 150 CG CD CE NZ REMARK 470 MET A 217 CG SD CE REMARK 470 LYS A 407 CG CD CE NZ REMARK 470 LYS A 465 CG CD CE NZ REMARK 470 LYS A 480 CD CE NZ REMARK 470 LYS A 481 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 733 O HOH A 824 1.73 REMARK 500 O HOH A 647 O HOH A 714 1.85 REMARK 500 OD2 ASP A 247 O HOH A 601 2.03 REMARK 500 O ASN A 151 O HOH A 602 2.07 REMARK 500 O HOH A 792 O HOH A 817 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 181 OH TYR A 472 6555 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 215 44.64 -77.28 REMARK 500 GLU A 216 167.78 76.01 REMARK 500 MET A 217 -1.64 75.85 REMARK 500 SER A 242 -150.38 -103.66 REMARK 500 LEU A 281 -64.62 -94.82 REMARK 500 CYS A 286 -4.59 78.11 REMARK 500 ASP A 287 49.42 -146.83 REMARK 500 ASP A 307 83.92 72.11 REMARK 500 GLN A 323 150.01 72.30 REMARK 500 SER A 362 64.72 -100.40 REMARK 500 ASP A 400 31.82 -92.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7AJ2 RELATED DB: PDB REMARK 900 RELATED ID: 7AJ4 RELATED DB: PDB REMARK 900 RELATED ID: 7AJ5 RELATED DB: PDB REMARK 900 RELATED ID: 7AJ7 RELATED DB: PDB REMARK 900 RELATED ID: 7AJ8 RELATED DB: PDB REMARK 900 RELATED ID: 7AJA RELATED DB: PDB REMARK 900 RELATED ID: 7AJM RELATED DB: PDB REMARK 900 RELATED ID: 7AJS RELATED DB: PDB REMARK 900 RELATED ID: 7AJV RELATED DB: PDB REMARK 900 RELATED ID: 7AJW RELATED DB: PDB REMARK 900 RELATED ID: 7AJY RELATED DB: PDB REMARK 900 RELATED ID: 7AK2 RELATED DB: PDB REMARK 900 RELATED ID: 7AKA RELATED DB: PDB REMARK 900 RELATED ID: 7AKB RELATED DB: PDB REMARK 900 RELATED ID: 7AKE RELATED DB: PDB REMARK 900 RELATED ID: 7AKF RELATED DB: PDB REMARK 900 RELATED ID: 7AKH RELATED DB: PDB DBREF 7AKL A 148 485 UNP Q13627 DYR1A_HUMAN 148 485 SEQADV 7AKL MET A 127 UNP Q13627 INITIATING METHIONINE SEQADV 7AKL GLY A 128 UNP Q13627 EXPRESSION TAG SEQADV 7AKL SER A 129 UNP Q13627 EXPRESSION TAG SEQADV 7AKL SER A 130 UNP Q13627 EXPRESSION TAG SEQADV 7AKL HIS A 131 UNP Q13627 EXPRESSION TAG SEQADV 7AKL HIS A 132 UNP Q13627 EXPRESSION TAG SEQADV 7AKL HIS A 133 UNP Q13627 EXPRESSION TAG SEQADV 7AKL HIS A 134 UNP Q13627 EXPRESSION TAG SEQADV 7AKL HIS A 135 UNP Q13627 EXPRESSION TAG SEQADV 7AKL HIS A 136 UNP Q13627 EXPRESSION TAG SEQADV 7AKL SER A 137 UNP Q13627 EXPRESSION TAG SEQADV 7AKL SER A 138 UNP Q13627 EXPRESSION TAG SEQADV 7AKL GLY A 139 UNP Q13627 EXPRESSION TAG SEQADV 7AKL LEU A 140 UNP Q13627 EXPRESSION TAG SEQADV 7AKL VAL A 141 UNP Q13627 EXPRESSION TAG SEQADV 7AKL PRO A 142 UNP Q13627 EXPRESSION TAG SEQADV 7AKL ARG A 143 UNP Q13627 EXPRESSION TAG SEQADV 7AKL GLY A 144 UNP Q13627 EXPRESSION TAG SEQADV 7AKL SEP A 145 UNP Q13627 EXPRESSION TAG SEQADV 7AKL HIS A 146 UNP Q13627 EXPRESSION TAG SEQADV 7AKL MET A 147 UNP Q13627 EXPRESSION TAG SEQRES 1 A 359 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 359 LEU VAL PRO ARG GLY SEP HIS MET ILE VAL LYS ASN GLY SEQRES 3 A 359 GLU LYS TRP MET ASP ARG TYR GLU ILE ASP SER LEU ILE SEQRES 4 A 359 GLY LYS GLY SER PHE GLY GLN VAL VAL LYS ALA TYR ASP SEQRES 5 A 359 ARG VAL GLU GLN GLU TRP VAL ALA ILE LYS ILE ILE LYS SEQRES 6 A 359 ASN LYS LYS ALA PHE LEU ASN GLN ALA GLN ILE GLU VAL SEQRES 7 A 359 ARG LEU LEU GLU LEU MET ASN LYS HIS ASP THR GLU MET SEQRES 8 A 359 LYS TYR TYR ILE VAL HIS LEU LYS ARG HIS PHE MET PHE SEQRES 9 A 359 ARG ASN HIS LEU CYS LEU VAL PHE GLU MET LEU SER TYR SEQRES 10 A 359 ASN LEU TYR ASP LEU LEU ARG ASN THR ASN PHE ARG GLY SEQRES 11 A 359 VAL SER LEU ASN LEU THR ARG LYS PHE ALA GLN GLN MET SEQRES 12 A 359 CYS THR ALA LEU LEU PHE LEU ALA THR PRO GLU LEU SER SEQRES 13 A 359 ILE ILE HIS CYS ASP LEU LYS PRO GLU ASN ILE LEU LEU SEQRES 14 A 359 CYS ASN PRO LYS ARG SER ALA ILE LYS ILE VAL ASP PHE SEQRES 15 A 359 GLY SER SER CYS GLN LEU GLY GLN ARG ILE TYR GLN PTR SEQRES 16 A 359 ILE GLN SER ARG PHE TYR ARG SER PRO GLU VAL LEU LEU SEQRES 17 A 359 GLY MET PRO TYR ASP LEU ALA ILE ASP MET TRP SER LEU SEQRES 18 A 359 GLY CYS ILE LEU VAL GLU MET HIS THR GLY GLU PRO LEU SEQRES 19 A 359 PHE SER GLY ALA ASN GLU VAL ASP GLN MET ASN LYS ILE SEQRES 20 A 359 VAL GLU VAL LEU GLY ILE PRO PRO ALA HIS ILE LEU ASP SEQRES 21 A 359 GLN ALA PRO LYS ALA ARG LYS PHE PHE GLU LYS LEU PRO SEQRES 22 A 359 ASP GLY THR TRP ASN LEU LYS LYS THR LYS ASP GLY LYS SEQRES 23 A 359 ARG GLU TYR LYS PRO PRO GLY THR ARG LYS LEU HIS ASN SEQRES 24 A 359 ILE LEU GLY VAL GLU THR GLY GLY PRO GLY GLY ARG ARG SEQRES 25 A 359 ALA GLY GLU SER GLY HIS THR VAL ALA ASP TYR LEU LYS SEQRES 26 A 359 PHE LYS ASP LEU ILE LEU ARG MET LEU ASP TYR ASP PRO SEQRES 27 A 359 LYS THR ARG ILE GLN PRO TYR TYR ALA LEU GLN HIS SER SEQRES 28 A 359 PHE PHE LYS LYS THR ALA ASP GLU MODRES 7AKL PTR A 321 TYR MODIFIED RESIDUE HET PTR A 321 16 HET RK5 A 501 19 HET CL A 502 1 HETNAM PTR O-PHOSPHOTYROSINE HETNAM RK5 4-(2,3-DIMETHYL-1-BENZOFURAN-5-YL)PYRIDINE-2,6-DIAMINE HETNAM CL CHLORIDE ION HETSYN PTR PHOSPHONOTYROSINE FORMUL 1 PTR C9 H12 N O6 P FORMUL 2 RK5 C15 H15 N3 O FORMUL 3 CL CL 1- FORMUL 4 HOH *242(H2 O) HELIX 1 AA1 LYS A 193 LYS A 212 1 20 HELIX 2 AA2 MET A 217 ILE A 221 5 5 HELIX 3 AA3 ASN A 244 THR A 252 1 9 HELIX 4 AA4 SER A 258 ALA A 277 1 20 HELIX 5 AA5 LYS A 289 GLU A 291 5 3 HELIX 6 AA6 SER A 324 ARG A 328 5 5 HELIX 7 AA7 SER A 329 LEU A 334 1 6 HELIX 8 AA8 LEU A 340 GLY A 357 1 18 HELIX 9 AA9 ASN A 365 GLY A 378 1 14 HELIX 10 AB1 PRO A 381 ASP A 386 1 6 HELIX 11 AB2 LYS A 390 PHE A 394 1 5 HELIX 12 AB3 LYS A 422 GLY A 428 1 7 HELIX 13 AB4 GLY A 433 ARG A 437 5 5 HELIX 14 AB5 THR A 445 LEU A 460 1 16 HELIX 15 AB6 GLN A 469 GLN A 475 1 7 HELIX 16 AB7 HIS A 476 LYS A 480 5 5 SHEET 1 AA1 6 LYS A 154 TRP A 155 0 SHEET 2 AA1 6 TYR A 159 GLY A 168 -1 O TYR A 159 N TRP A 155 SHEET 3 AA1 6 GLY A 171 ASP A 178 -1 O VAL A 173 N ILE A 165 SHEET 4 AA1 6 GLU A 183 ILE A 190 -1 O ILE A 189 N GLN A 172 SHEET 5 AA1 6 HIS A 233 GLU A 239 -1 O LEU A 236 N LYS A 188 SHEET 6 AA1 6 LEU A 224 PHE A 230 -1 N LYS A 225 O VAL A 237 SHEET 1 AA2 2 ILE A 283 ILE A 284 0 SHEET 2 AA2 2 CYS A 312 GLN A 313 -1 O CYS A 312 N ILE A 284 SHEET 1 AA3 2 ILE A 293 LEU A 295 0 SHEET 2 AA3 2 ILE A 303 ILE A 305 -1 O LYS A 304 N LEU A 294 SHEET 1 AA4 2 PHE A 395 LEU A 398 0 SHEET 2 AA4 2 THR A 402 LEU A 405 -1 O THR A 402 N LEU A 398 LINK C GLN A 320 N PTR A 321 1555 1555 1.35 LINK C PTR A 321 N ILE A 322 1555 1555 1.33 CRYST1 81.888 81.888 124.084 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012212 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012212 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008059 0.00000