HEADER TRANSLOCASE 02-OCT-20 7AKZ TITLE DECIPHERING THE ROLE OF THE CHANNEL CONSTRICTIONS IN THE OPENING TITLE 2 MECHANISM OF MEXAB-OPRM EFFLUX PUMP FROM PSEUDOMONAS AERUGINOSA COMPND MOL_ID: 1; COMPND 2 MOLECULE: OUTER MEMBRANE PROTEIN OPRM; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA (STRAIN ATCC 15692 / DSM SOURCE 3 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1); SOURCE 4 ORGANISM_TAXID: 208964; SOURCE 5 STRAIN: ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 SOURCE 6 / 1C / PRS 101 / PAO1; SOURCE 7 GENE: OPRM, OPRK, PA0427; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS EFFLUX PUMP, ANTIBIOTIC RESISTANCE, TOLC-LIKE, CHANNEL., TRANSLOCASE EXPDTA X-RAY DIFFRACTION AUTHOR V.Y.NTSOGO ENGUENE,L.MONLEZUN,M.MA,C.GARNIER,M.B.LASCOMBE,M.SALEM, AUTHOR 2 S.GUENARD,P.PLESIAT,C.LLANES,G.PHAN,I.BROUTIN REVDAT 2 31-JAN-24 7AKZ 1 REMARK REVDAT 1 13-APR-22 7AKZ 0 JRNL AUTH V.Y.NTSOGO ENGUENE,L.MONLEZUN,M.MA,C.GARNIER,M.B.LASCOMBE, JRNL AUTH 2 M.SALEM,S.GUENARD,P.PLESIAT,C.LLANES,G.PHAN,I.BROUTIN JRNL TITL DECIPHERING THE ROLE OF THE CHANNEL CONSTRICTIONS IN THE JRNL TITL 2 OPENING MECHANISM OF MEXAB-OPRM EFFLUX PUMP FROM PSEUDOMONAS JRNL TITL 3 AERUGINOSA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 25563 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.273 REMARK 3 R VALUE (WORKING SET) : 0.271 REMARK 3 FREE R VALUE : 0.318 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1275 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.9900 - 6.6500 0.95 2807 154 0.2715 0.3078 REMARK 3 2 6.6500 - 5.2800 0.98 2696 171 0.2767 0.3072 REMARK 3 3 5.2800 - 4.6100 0.99 2716 143 0.2240 0.2950 REMARK 3 4 4.6100 - 4.1900 0.99 2687 139 0.2406 0.2909 REMARK 3 5 4.1900 - 3.8900 0.99 2680 127 0.2612 0.3012 REMARK 3 6 3.8900 - 3.6600 1.00 2714 136 0.2698 0.3399 REMARK 3 7 3.6600 - 3.4800 1.00 2655 145 0.2931 0.3867 REMARK 3 8 3.4800 - 3.3300 1.00 2664 129 0.3303 0.3693 REMARK 3 9 3.3300 - 3.2000 1.00 2669 131 0.3720 0.4041 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.500 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 36.150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 96.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7AKZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-OCT-20. REMARK 100 THE DEPOSITION ID IS D_1292110044. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.967700 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 195912 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 6.970 REMARK 200 R MERGE (I) : 0.19800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.5900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.30 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.71000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3D5K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 400, SODIUM CITRATE, SODIUM REMARK 280 CHLORIDE, MAGNESIUM CHLORIDE., PH 6.0, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 43.02950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 24.84309 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 349.94333 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 43.02950 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 24.84309 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 349.94333 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 43.02950 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 24.84309 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 349.94333 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 43.02950 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 24.84309 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 349.94333 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 43.02950 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 24.84309 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 349.94333 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 43.02950 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 24.84309 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 349.94333 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 49.68619 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 699.88667 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 49.68619 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 699.88667 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 49.68619 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 699.88667 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 49.68619 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 699.88667 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 49.68619 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 699.88667 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 49.68619 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 699.88667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 61240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -66.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 60190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -92.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -43.02950 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -74.52928 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 43.02950 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 -74.52928 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 456 REMARK 465 GLN A 457 REMARK 465 GLN A 458 REMARK 465 GLN A 459 REMARK 465 THR A 460 REMARK 465 ALA A 461 REMARK 465 LYS A 462 REMARK 465 LYS A 463 REMARK 465 GLU A 464 REMARK 465 ASP A 465 REMARK 465 PRO A 466 REMARK 465 GLN A 467 REMARK 465 ALA A 468 REMARK 465 HIS A 469 REMARK 465 HIS A 470 REMARK 465 HIS A 471 REMARK 465 HIS A 472 REMARK 465 HIS A 473 REMARK 465 HIS A 474 REMARK 465 THR B 456 REMARK 465 GLN B 457 REMARK 465 GLN B 458 REMARK 465 GLN B 459 REMARK 465 THR B 460 REMARK 465 ALA B 461 REMARK 465 LYS B 462 REMARK 465 LYS B 463 REMARK 465 GLU B 464 REMARK 465 ASP B 465 REMARK 465 PRO B 466 REMARK 465 GLN B 467 REMARK 465 ALA B 468 REMARK 465 HIS B 469 REMARK 465 HIS B 470 REMARK 465 HIS B 471 REMARK 465 HIS B 472 REMARK 465 HIS B 473 REMARK 465 HIS B 474 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 CYS A 1 N CA C O REMARK 480 CYS B 1 N CA C O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA B 337 N SER B 339 1.97 REMARK 500 O LYS B 402 OG1 THR B 406 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALA A 337 CB - CA - C ANGL. DEV. = 11.5 DEGREES REMARK 500 ALA A 337 N - CA - C ANGL. DEV. = -24.6 DEGREES REMARK 500 ALA B 337 CB - CA - C ANGL. DEV. = 16.1 DEGREES REMARK 500 ALA B 337 N - CA - C ANGL. DEV. = -21.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 13 42.56 -80.95 REMARK 500 PRO A 100 -176.84 -67.20 REMARK 500 ALA A 201 96.09 60.49 REMARK 500 ASN A 245 49.64 -101.56 REMARK 500 VAL A 408 -72.03 -38.88 REMARK 500 PRO B 13 40.21 -84.36 REMARK 500 PRO B 100 -176.55 -68.20 REMARK 500 GLN B 114 113.91 -165.21 REMARK 500 ASN B 245 48.47 -104.86 REMARK 500 PHE B 317 41.19 -95.78 REMARK 500 VAL B 408 -66.61 -129.16 REMARK 500 TYR B 411 -63.64 60.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PLM A 501 REMARK 610 BOG A 503 DBREF 7AKZ A 1 468 UNP Q51487 OPRM_PSEAE 18 485 DBREF 7AKZ B 1 468 UNP Q51487 OPRM_PSEAE 18 485 SEQADV 7AKZ LEU A 403 UNP Q51487 ARG 420 ENGINEERED MUTATION SEQADV 7AKZ PHE A 404 UNP Q51487 TYR 421 ENGINEERED MUTATION SEQADV 7AKZ GLY A 412 UNP Q51487 LEU 429 ENGINEERED MUTATION SEQADV 7AKZ ALA A 416 UNP Q51487 ASP 433 ENGINEERED MUTATION SEQADV 7AKZ ALA A 419 UNP Q51487 ARG 436 ENGINEERED MUTATION SEQADV 7AKZ HIS A 469 UNP Q51487 EXPRESSION TAG SEQADV 7AKZ HIS A 470 UNP Q51487 EXPRESSION TAG SEQADV 7AKZ HIS A 471 UNP Q51487 EXPRESSION TAG SEQADV 7AKZ HIS A 472 UNP Q51487 EXPRESSION TAG SEQADV 7AKZ HIS A 473 UNP Q51487 EXPRESSION TAG SEQADV 7AKZ HIS A 474 UNP Q51487 EXPRESSION TAG SEQADV 7AKZ LEU B 403 UNP Q51487 ARG 420 ENGINEERED MUTATION SEQADV 7AKZ PHE B 404 UNP Q51487 TYR 421 ENGINEERED MUTATION SEQADV 7AKZ GLY B 412 UNP Q51487 LEU 429 ENGINEERED MUTATION SEQADV 7AKZ ALA B 416 UNP Q51487 ASP 433 ENGINEERED MUTATION SEQADV 7AKZ ALA B 419 UNP Q51487 ARG 436 ENGINEERED MUTATION SEQADV 7AKZ HIS B 469 UNP Q51487 EXPRESSION TAG SEQADV 7AKZ HIS B 470 UNP Q51487 EXPRESSION TAG SEQADV 7AKZ HIS B 471 UNP Q51487 EXPRESSION TAG SEQADV 7AKZ HIS B 472 UNP Q51487 EXPRESSION TAG SEQADV 7AKZ HIS B 473 UNP Q51487 EXPRESSION TAG SEQADV 7AKZ HIS B 474 UNP Q51487 EXPRESSION TAG SEQRES 1 A 474 CYS SER LEU ILE PRO ASP TYR GLN ARG PRO GLU ALA PRO SEQRES 2 A 474 VAL ALA ALA ALA TYR PRO GLN GLY GLN ALA TYR GLY GLN SEQRES 3 A 474 ASN THR GLY ALA ALA ALA VAL PRO ALA ALA ASP ILE GLY SEQRES 4 A 474 TRP ARG GLU PHE PHE ARG ASP PRO GLN LEU GLN GLN LEU SEQRES 5 A 474 ILE GLY VAL ALA LEU GLU ASN ASN ARG ASP LEU ARG VAL SEQRES 6 A 474 ALA ALA LEU ASN VAL GLU ALA PHE ARG ALA GLN TYR ARG SEQRES 7 A 474 ILE GLN ARG ALA ASP LEU PHE PRO ARG ILE GLY VAL ASP SEQRES 8 A 474 GLY SER GLY THR ARG GLN ARG LEU PRO GLY ASP LEU SER SEQRES 9 A 474 THR THR GLY SER PRO ALA ILE SER SER GLN TYR GLY VAL SEQRES 10 A 474 THR LEU GLY THR THR ALA TRP GLU LEU ASP LEU PHE GLY SEQRES 11 A 474 ARG LEU ARG SER LEU ARG ASP GLN ALA LEU GLU GLN TYR SEQRES 12 A 474 LEU ALA THR GLU GLN ALA GLN ARG SER ALA GLN THR THR SEQRES 13 A 474 LEU VAL ALA SER VAL ALA THR ALA TYR LEU THR LEU LYS SEQRES 14 A 474 ALA ASP GLN ALA GLN LEU GLN LEU THR LYS ASP THR LEU SEQRES 15 A 474 GLY THR TYR GLN LYS SER PHE ASP LEU THR GLN ARG SER SEQRES 16 A 474 TYR ASP VAL GLY VAL ALA SER ALA LEU ASP LEU ARG GLN SEQRES 17 A 474 ALA GLN THR ALA VAL GLU GLY ALA ARG ALA THR LEU ALA SEQRES 18 A 474 GLN TYR THR ARG LEU VAL ALA GLN ASP GLN ASN ALA LEU SEQRES 19 A 474 VAL LEU LEU LEU GLY SER GLY ILE PRO ALA ASN LEU PRO SEQRES 20 A 474 GLN GLY LEU GLY LEU ASP GLN THR LEU LEU THR GLU VAL SEQRES 21 A 474 PRO ALA GLY LEU PRO SER ASP LEU LEU GLN ARG ARG PRO SEQRES 22 A 474 ASP ILE LEU GLU ALA GLU HIS GLN LEU MET ALA ALA ASN SEQRES 23 A 474 ALA SER ILE GLY ALA ALA ARG ALA ALA PHE PHE PRO SER SEQRES 24 A 474 ILE SER LEU THR ALA ASN ALA GLY THR MET SER ARG GLN SEQRES 25 A 474 LEU SER GLY LEU PHE ASP ALA GLY SER GLY SER TRP LEU SEQRES 26 A 474 PHE GLN PRO SER ILE ASN LEU PRO ILE PHE THR ALA GLY SEQRES 27 A 474 SER LEU ARG ALA SER LEU ASP TYR ALA LYS ILE GLN LYS SEQRES 28 A 474 ASP ILE ASN VAL ALA GLN TYR GLU LYS ALA ILE GLN THR SEQRES 29 A 474 ALA PHE GLN GLU VAL ALA ASP GLY LEU ALA ALA ARG GLY SEQRES 30 A 474 THR PHE THR GLU GLN LEU GLN ALA GLN ARG ASP LEU VAL SEQRES 31 A 474 LYS ALA SER ASP GLU TYR TYR GLN LEU ALA ASP LYS LEU SEQRES 32 A 474 PHE ARG THR GLY VAL ASP ASN TYR GLY THR LEU LEU ALA SEQRES 33 A 474 ALA GLN ALA SER LEU PHE THR ALA GLN GLN GLN LEU ILE SEQRES 34 A 474 THR ASP ARG LEU ASN GLN LEU THR SER GLU VAL ASN LEU SEQRES 35 A 474 TYR LYS ALA LEU GLY GLY GLY TRP ASN GLN GLN THR VAL SEQRES 36 A 474 THR GLN GLN GLN THR ALA LYS LYS GLU ASP PRO GLN ALA SEQRES 37 A 474 HIS HIS HIS HIS HIS HIS SEQRES 1 B 474 CYS SER LEU ILE PRO ASP TYR GLN ARG PRO GLU ALA PRO SEQRES 2 B 474 VAL ALA ALA ALA TYR PRO GLN GLY GLN ALA TYR GLY GLN SEQRES 3 B 474 ASN THR GLY ALA ALA ALA VAL PRO ALA ALA ASP ILE GLY SEQRES 4 B 474 TRP ARG GLU PHE PHE ARG ASP PRO GLN LEU GLN GLN LEU SEQRES 5 B 474 ILE GLY VAL ALA LEU GLU ASN ASN ARG ASP LEU ARG VAL SEQRES 6 B 474 ALA ALA LEU ASN VAL GLU ALA PHE ARG ALA GLN TYR ARG SEQRES 7 B 474 ILE GLN ARG ALA ASP LEU PHE PRO ARG ILE GLY VAL ASP SEQRES 8 B 474 GLY SER GLY THR ARG GLN ARG LEU PRO GLY ASP LEU SER SEQRES 9 B 474 THR THR GLY SER PRO ALA ILE SER SER GLN TYR GLY VAL SEQRES 10 B 474 THR LEU GLY THR THR ALA TRP GLU LEU ASP LEU PHE GLY SEQRES 11 B 474 ARG LEU ARG SER LEU ARG ASP GLN ALA LEU GLU GLN TYR SEQRES 12 B 474 LEU ALA THR GLU GLN ALA GLN ARG SER ALA GLN THR THR SEQRES 13 B 474 LEU VAL ALA SER VAL ALA THR ALA TYR LEU THR LEU LYS SEQRES 14 B 474 ALA ASP GLN ALA GLN LEU GLN LEU THR LYS ASP THR LEU SEQRES 15 B 474 GLY THR TYR GLN LYS SER PHE ASP LEU THR GLN ARG SER SEQRES 16 B 474 TYR ASP VAL GLY VAL ALA SER ALA LEU ASP LEU ARG GLN SEQRES 17 B 474 ALA GLN THR ALA VAL GLU GLY ALA ARG ALA THR LEU ALA SEQRES 18 B 474 GLN TYR THR ARG LEU VAL ALA GLN ASP GLN ASN ALA LEU SEQRES 19 B 474 VAL LEU LEU LEU GLY SER GLY ILE PRO ALA ASN LEU PRO SEQRES 20 B 474 GLN GLY LEU GLY LEU ASP GLN THR LEU LEU THR GLU VAL SEQRES 21 B 474 PRO ALA GLY LEU PRO SER ASP LEU LEU GLN ARG ARG PRO SEQRES 22 B 474 ASP ILE LEU GLU ALA GLU HIS GLN LEU MET ALA ALA ASN SEQRES 23 B 474 ALA SER ILE GLY ALA ALA ARG ALA ALA PHE PHE PRO SER SEQRES 24 B 474 ILE SER LEU THR ALA ASN ALA GLY THR MET SER ARG GLN SEQRES 25 B 474 LEU SER GLY LEU PHE ASP ALA GLY SER GLY SER TRP LEU SEQRES 26 B 474 PHE GLN PRO SER ILE ASN LEU PRO ILE PHE THR ALA GLY SEQRES 27 B 474 SER LEU ARG ALA SER LEU ASP TYR ALA LYS ILE GLN LYS SEQRES 28 B 474 ASP ILE ASN VAL ALA GLN TYR GLU LYS ALA ILE GLN THR SEQRES 29 B 474 ALA PHE GLN GLU VAL ALA ASP GLY LEU ALA ALA ARG GLY SEQRES 30 B 474 THR PHE THR GLU GLN LEU GLN ALA GLN ARG ASP LEU VAL SEQRES 31 B 474 LYS ALA SER ASP GLU TYR TYR GLN LEU ALA ASP LYS LEU SEQRES 32 B 474 PHE ARG THR GLY VAL ASP ASN TYR GLY THR LEU LEU ALA SEQRES 33 B 474 ALA GLN ALA SER LEU PHE THR ALA GLN GLN GLN LEU ILE SEQRES 34 B 474 THR ASP ARG LEU ASN GLN LEU THR SER GLU VAL ASN LEU SEQRES 35 B 474 TYR LYS ALA LEU GLY GLY GLY TRP ASN GLN GLN THR VAL SEQRES 36 B 474 THR GLN GLN GLN THR ALA LYS LYS GLU ASP PRO GLN ALA SEQRES 37 B 474 HIS HIS HIS HIS HIS HIS HET PLM A 501 9 HET BOG A 502 20 HET BOG A 503 16 HET BOG A 504 20 HETNAM PLM PALMITIC ACID HETNAM BOG OCTYL BETA-D-GLUCOPYRANOSIDE HETSYN BOG BETA-OCTYLGLUCOSIDE; OCTYL BETA-D-GLUCOSIDE; OCTYL D- HETSYN 2 BOG GLUCOSIDE; OCTYL GLUCOSIDE FORMUL 3 PLM C16 H32 O2 FORMUL 4 BOG 3(C14 H28 O6) HELIX 1 AA1 PRO A 34 ILE A 38 5 5 HELIX 2 AA2 GLY A 39 PHE A 44 1 6 HELIX 3 AA3 ASP A 46 ASN A 60 1 15 HELIX 4 AA4 ASN A 60 ASP A 83 1 24 HELIX 5 AA5 GLY A 130 ASP A 197 1 68 HELIX 6 AA6 SER A 202 GLY A 239 1 38 HELIX 7 AA7 LEU A 264 SER A 266 5 3 HELIX 8 AA8 ASP A 267 ARG A 272 1 6 HELIX 9 AA9 ARG A 272 ALA A 294 1 23 HELIX 10 AB1 GLY A 338 THR A 406 1 69 HELIX 11 AB2 ASN A 410 GLY A 447 1 38 HELIX 12 AB3 GLY B 39 PHE B 44 1 6 HELIX 13 AB4 ASP B 46 ASN B 60 1 15 HELIX 14 AB5 ASN B 60 ASP B 83 1 24 HELIX 15 AB6 GLY B 130 VAL B 198 1 69 HELIX 16 AB7 SER B 202 GLY B 239 1 38 HELIX 17 AB8 LEU B 264 SER B 266 5 3 HELIX 18 AB9 ASP B 267 ARG B 272 1 6 HELIX 19 AC1 ARG B 272 ALA B 294 1 23 HELIX 20 AC2 GLN B 312 LEU B 316 5 5 HELIX 21 AC3 GLY B 338 THR B 406 1 69 HELIX 22 AC4 TYR B 411 GLY B 447 1 37 SHEET 1 AA1 4 ILE A 88 LEU A 99 0 SHEET 2 AA1 4 ALA A 110 LEU A 126 -1 O ALA A 110 N LEU A 99 SHEET 3 AA1 4 SER A 299 SER A 310 -1 O SER A 310 N TYR A 115 SHEET 4 AA1 4 GLY A 322 ASN A 331 -1 O SER A 323 N GLY A 307 SHEET 1 AA2 4 ILE B 88 LEU B 99 0 SHEET 2 AA2 4 ALA B 110 LEU B 126 -1 O GLY B 116 N SER B 93 SHEET 3 AA2 4 SER B 299 SER B 310 -1 O LEU B 302 N TRP B 124 SHEET 4 AA2 4 GLY B 322 ASN B 331 -1 O SER B 323 N GLY B 307 LINK SG CYS A 1 C1 PLM A 501 1555 1555 1.77 CRYST1 86.059 86.059 1049.830 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011620 0.006709 0.000000 0.00000 SCALE2 0.000000 0.013418 0.000000 0.00000 SCALE3 0.000000 0.000000 0.000953 0.00000