HEADER IMMUNE SYSTEM 07-OCT-20 7ALV TITLE CRYSTAL STRUCTURE OF NLRP3 NACHT DOMAIN IN COMPLEX WITH A POTENT TITLE 2 INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: NACHT DOMAIN; COMPND 5 SYNONYM: ANGIOTENSIN/VASOPRESSIN RECEPTOR AII/AVP-LIKE,CATERPILLER COMPND 6 PROTEIN 1.1,CLR1.1,COLD-INDUCED AUTOINFLAMMATORY SYNDROME 1 PROTEIN, COMPND 7 CRYOPYRIN,PYRIN-CONTAINING APAF1-LIKE PROTEIN 1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NLRP3, C1ORF7, CIAS1, NALP3, PYPAF1; SOURCE 6 EXPRESSION_SYSTEM: UNIDENTIFIED BACULOVIRUS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10469; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: SF9 KEYWDS INFLAMMASOME, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR C.DEKKER,A.HINNIGER REVDAT 4 31-JAN-24 7ALV 1 REMARK REVDAT 3 17-NOV-21 7ALV 1 JRNL REVDAT 2 03-NOV-21 7ALV 1 JRNL REVDAT 1 20-OCT-21 7ALV 0 JRNL AUTH C.DEKKER,H.MATTES,M.WRIGHT,A.BOETTCHER,A.HINNIGER,N.HUGHES, JRNL AUTH 2 S.KAPPS-FOUTHIER,J.EDER,P.ERBEL,N.STIEFL,A.MACKAY,C.J.FARADY JRNL TITL CRYSTAL STRUCTURE OF NLRP3 NACHT DOMAIN WITH AN INHIBITOR JRNL TITL 2 DEFINES MECHANISM OF INFLAMMASOME INHIBITION. JRNL REF J.MOL.BIOL. V. 433 67309 2021 JRNL REFN ESSN 1089-8638 JRNL PMID 34687713 JRNL DOI 10.1016/J.JMB.2021.167309 REMARK 2 REMARK 2 RESOLUTION. 2.84 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.7 (20-MAY-2020) REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.84 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 79.39 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 68.2 REMARK 3 NUMBER OF REFLECTIONS : 12189 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.190 REMARK 3 FREE R VALUE TEST SET COUNT : 633 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.84 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.09 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 9.81 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 376 REMARK 3 BIN R VALUE (WORKING SET) : 0.2651 REMARK 3 BIN FREE R VALUE : 0.3899 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.57 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 18 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3718 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 8 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 88.23 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 83.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.45640 REMARK 3 B22 (A**2) : 1.45640 REMARK 3 B33 (A**2) : -2.91290 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.430 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.474 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.922 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.853 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3864 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5232 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1315 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 650 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3864 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 503 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2997 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.00 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.74 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 20.01 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 14.3407 34.7814 133.9010 REMARK 3 T TENSOR REMARK 3 T11: -0.2151 T22: -0.1823 REMARK 3 T33: -0.2008 T12: -0.0799 REMARK 3 T13: 0.0806 T23: -0.0272 REMARK 3 L TENSOR REMARK 3 L11: 3.6413 L22: 1.9311 REMARK 3 L33: 5.8919 L12: -1.1572 REMARK 3 L13: -2.1833 L23: 2.3965 REMARK 3 S TENSOR REMARK 3 S11: -0.2009 S12: -0.0349 S13: -0.3912 REMARK 3 S21: 0.1740 S22: -0.0394 S23: 0.0488 REMARK 3 S31: 0.6819 S32: 0.0951 S33: 0.2403 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7ALV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-OCT-20. REMARK 100 THE DEPOSITION ID IS D_1292111519. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-FEB-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : STARANISO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12189 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.830 REMARK 200 RESOLUTION RANGE LOW (A) : 79.394 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 18.70 REMARK 200 R MERGE (I) : 0.25500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.84 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 13.1 REMARK 200 DATA REDUNDANCY IN SHELL : 18.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDBID 5IRN, 4KXF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.5, 1.4M REMARK 280 SODIUMCITRATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 87.51333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 175.02667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 131.27000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 218.78333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 43.75667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 87.51333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 175.02667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 218.78333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 131.27000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 43.75667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 130 REMARK 465 LYS A 131 REMARK 465 MET A 132 REMARK 465 LYS A 133 REMARK 465 ASP A 153 REMARK 465 ARG A 154 REMARK 465 ASN A 155 REMARK 465 ALA A 156 REMARK 465 ARG A 157 REMARK 465 LEU A 158 REMARK 465 GLY A 159 REMARK 465 GLU A 160 REMARK 465 SER A 161 REMARK 465 VAL A 162 REMARK 465 SER A 163 REMARK 465 ARG A 178 REMARK 465 SER A 179 REMARK 465 GLN A 180 REMARK 465 GLN A 181 REMARK 465 GLU A 182 REMARK 465 ARG A 183 REMARK 465 GLU A 184 REMARK 465 GLN A 185 REMARK 465 GLU A 186 REMARK 465 LEU A 187 REMARK 465 LEU A 188 REMARK 465 ALA A 189 REMARK 465 ILE A 190 REMARK 465 GLY A 191 REMARK 465 LYS A 192 REMARK 465 THR A 193 REMARK 465 LYS A 194 REMARK 465 THR A 195 REMARK 465 CYS A 196 REMARK 465 GLU A 197 REMARK 465 SER A 198 REMARK 465 PRO A 199 REMARK 465 VAL A 200 REMARK 465 ASP A 213 REMARK 465 GLU A 214 REMARK 465 HIS A 215 REMARK 465 SER A 216 REMARK 465 GLN A 452 REMARK 465 PRO A 453 REMARK 465 ARG A 454 REMARK 465 GLY A 455 REMARK 465 GLY A 456 REMARK 465 SER A 457 REMARK 465 GLN A 458 REMARK 465 GLU A 459 REMARK 465 HIS A 460 REMARK 465 GLY A 461 REMARK 465 LEU A 462 REMARK 465 LYS A 496 REMARK 465 ALA A 497 REMARK 465 ASP A 513 REMARK 465 CYS A 514 REMARK 465 GLU A 515 REMARK 465 GLU A 539 REMARK 465 LYS A 540 REMARK 465 GLU A 541 REMARK 465 GLY A 542 REMARK 465 ARG A 543 REMARK 465 THR A 544 REMARK 465 ASN A 545 REMARK 465 VAL A 546 REMARK 465 PRO A 547 REMARK 465 GLY A 548 REMARK 465 SER A 549 REMARK 465 ARG A 550 REMARK 465 LEU A 551 REMARK 465 LYS A 552 REMARK 465 LEU A 553 REMARK 465 PRO A 554 REMARK 465 THR A 589 REMARK 465 GLU A 677 REMARK 465 SER A 678 REMARK 465 LEU A 679 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 134 CG CD CE NZ REMARK 470 LYS A 139 CG CD CE NZ REMARK 470 LYS A 142 CG CD CE NZ REMARK 470 ARG A 147 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 151 CG1 CG2 CD1 REMARK 470 GLU A 152 CG CD OE1 OE2 REMARK 470 LEU A 164 CG CD1 CD2 REMARK 470 ASN A 165 CG OD1 ND2 REMARK 470 ARG A 172 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 176 CG CD OE1 OE2 REMARK 470 HIS A 177 CG ND1 CD2 CE1 NE2 REMARK 470 SER A 201 OG REMARK 470 GLU A 217 CG CD OE1 OE2 REMARK 470 GLU A 313 CG CD OE1 OE2 REMARK 470 LYS A 430 CG CD CE NZ REMARK 470 THR A 435 OG1 CG2 REMARK 470 HIS A 465 CG ND1 CD2 CE1 NE2 REMARK 470 LEU A 466 CG CD1 CD2 REMARK 470 GLU A 486 CG CD OE1 OE2 REMARK 470 SER A 487 OG REMARK 470 ARG A 490 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 491 CG OD1 ND2 REMARK 470 GLN A 495 CG CD OE1 NE2 REMARK 470 ASP A 498 CG OD1 OD2 REMARK 470 VAL A 499 CG1 CG2 REMARK 470 PHE A 502 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 504 CG CD NE CZ NH1 NH2 REMARK 470 MET A 505 CG SD CE REMARK 470 ASN A 506 CG OD1 ND2 REMARK 470 GLN A 509 CG CD OE1 NE2 REMARK 470 LYS A 510 CG CD CE NZ REMARK 470 GLU A 511 CG CD OE1 OE2 REMARK 470 VAL A 512 CG1 CG2 REMARK 470 LYS A 516 CG CD CE NZ REMARK 470 GLU A 537 CG CD OE1 OE2 REMARK 470 GLU A 538 CG CD OE1 OE2 REMARK 470 GLU A 563 CG CD OE1 OE2 REMARK 470 LYS A 567 CG CD CE NZ REMARK 470 LYS A 570 CG CD CE NZ REMARK 470 TYR A 591 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU A 592 CG CD1 CD2 REMARK 470 LYS A 594 CG CD CE NZ REMARK 470 LYS A 595 CG CD CE NZ REMARK 470 LYS A 619 CG CD CE NZ REMARK 470 LYS A 620 CG CD CE NZ REMARK 470 LEU A 621 CG CD1 CD2 REMARK 470 LYS A 652 CG CD CE NZ REMARK 470 ILE A 653 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 337 2.22 -67.10 REMARK 500 LEU A 341 71.72 50.49 REMARK 500 ALA A 433 130.09 -171.87 REMARK 500 LEU A 450 47.31 -90.57 REMARK 500 ASN A 564 54.55 -116.83 REMARK 500 TYR A 572 -42.94 76.27 REMARK 500 GLU A 639 109.02 -48.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue RM5 A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 702 DBREF 7ALV A 131 679 UNP Q96P20 NLRP3_HUMAN 131 679 SEQADV 7ALV GLY A 130 UNP Q96P20 EXPRESSION TAG SEQRES 1 A 550 GLY LYS MET LYS LYS ASP TYR ARG LYS LYS TYR ARG LYS SEQRES 2 A 550 TYR VAL ARG SER ARG PHE GLN CYS ILE GLU ASP ARG ASN SEQRES 3 A 550 ALA ARG LEU GLY GLU SER VAL SER LEU ASN LYS ARG TYR SEQRES 4 A 550 THR ARG LEU ARG LEU ILE LYS GLU HIS ARG SER GLN GLN SEQRES 5 A 550 GLU ARG GLU GLN GLU LEU LEU ALA ILE GLY LYS THR LYS SEQRES 6 A 550 THR CYS GLU SER PRO VAL SER PRO ILE LYS MET GLU LEU SEQRES 7 A 550 LEU PHE ASP PRO ASP ASP GLU HIS SER GLU PRO VAL HIS SEQRES 8 A 550 THR VAL VAL PHE GLN GLY ALA ALA GLY ILE GLY LYS THR SEQRES 9 A 550 ILE LEU ALA ARG LYS MET MET LEU ASP TRP ALA SER GLY SEQRES 10 A 550 THR LEU TYR GLN ASP ARG PHE ASP TYR LEU PHE TYR ILE SEQRES 11 A 550 HIS CYS ARG GLU VAL SER LEU VAL THR GLN ARG SER LEU SEQRES 12 A 550 GLY ASP LEU ILE MET SER CYS CYS PRO ASP PRO ASN PRO SEQRES 13 A 550 PRO ILE HIS LYS ILE VAL ARG LYS PRO SER ARG ILE LEU SEQRES 14 A 550 PHE LEU MET ASP GLY PHE ASP GLU LEU GLN GLY ALA PHE SEQRES 15 A 550 ASP GLU HIS ILE GLY PRO LEU CYS THR ASP TRP GLN LYS SEQRES 16 A 550 ALA GLU ARG GLY ASP ILE LEU LEU SER SER LEU ILE ARG SEQRES 17 A 550 LYS LYS LEU LEU PRO GLU ALA SER LEU LEU ILE THR THR SEQRES 18 A 550 ARG PRO VAL ALA LEU GLU LYS LEU GLN HIS LEU LEU ASP SEQRES 19 A 550 HIS PRO ARG HIS VAL GLU ILE LEU GLY PHE SER GLU ALA SEQRES 20 A 550 LYS ARG LYS GLU TYR PHE PHE LYS TYR PHE SER ASP GLU SEQRES 21 A 550 ALA GLN ALA ARG ALA ALA PHE SER LEU ILE GLN GLU ASN SEQRES 22 A 550 GLU VAL LEU PHE THR MET CYS PHE ILE PRO LEU VAL CYS SEQRES 23 A 550 TRP ILE VAL CYS THR GLY LEU LYS GLN GLN MET GLU SER SEQRES 24 A 550 GLY LYS SER LEU ALA GLN THR SER LYS THR THR THR ALA SEQRES 25 A 550 VAL TYR VAL PHE PHE LEU SER SER LEU LEU GLN PRO ARG SEQRES 26 A 550 GLY GLY SER GLN GLU HIS GLY LEU CYS ALA HIS LEU TRP SEQRES 27 A 550 GLY LEU CYS SER LEU ALA ALA ASP GLY ILE TRP ASN GLN SEQRES 28 A 550 LYS ILE LEU PHE GLU GLU SER ASP LEU ARG ASN HIS GLY SEQRES 29 A 550 LEU GLN LYS ALA ASP VAL SER ALA PHE LEU ARG MET ASN SEQRES 30 A 550 LEU PHE GLN LYS GLU VAL ASP CYS GLU LYS PHE TYR SER SEQRES 31 A 550 PHE ILE HIS MET THR PHE GLN GLU PHE PHE ALA ALA MET SEQRES 32 A 550 TYR TYR LEU LEU GLU GLU GLU LYS GLU GLY ARG THR ASN SEQRES 33 A 550 VAL PRO GLY SER ARG LEU LYS LEU PRO SER ARG ASP VAL SEQRES 34 A 550 THR VAL LEU LEU GLU ASN TYR GLY LYS PHE GLU LYS GLY SEQRES 35 A 550 TYR LEU ILE PHE VAL VAL ARG PHE LEU PHE GLY LEU VAL SEQRES 36 A 550 ASN GLN GLU ARG THR SER TYR LEU GLU LYS LYS LEU SER SEQRES 37 A 550 CYS LYS ILE SER GLN GLN ILE ARG LEU GLU LEU LEU LYS SEQRES 38 A 550 TRP ILE GLU VAL LYS ALA LYS ALA LYS LYS LEU GLN ILE SEQRES 39 A 550 GLN PRO SER GLN LEU GLU LEU PHE TYR CYS LEU TYR GLU SEQRES 40 A 550 MET GLN GLU GLU ASP PHE VAL GLN ARG ALA MET ASP TYR SEQRES 41 A 550 PHE PRO LYS ILE GLU ILE ASN LEU SER THR ARG MET ASP SEQRES 42 A 550 HIS MET VAL SER SER PHE CYS ILE GLU ASN CYS HIS ARG SEQRES 43 A 550 VAL GLU SER LEU HET RM5 A 701 29 HET ADP A 702 27 HETNAM RM5 1-[4-CHLORANYL-2,6-DI(PROPAN-2-YL)PHENYL]-3-[4-(2- HETNAM 2 RM5 OXIDANYLPROPAN-2-YL)FURAN-2-YL]SULFONYL-UREA HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 2 RM5 C20 H27 CL N2 O5 S FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 HOH *8(H2 O) HELIX 1 AA1 LYS A 134 PHE A 148 1 15 HELIX 2 AA2 LEU A 164 TYR A 168 5 5 HELIX 3 AA3 LYS A 204 LEU A 208 5 5 HELIX 4 AA4 GLY A 231 SER A 245 1 15 HELIX 5 AA5 ARG A 262 VAL A 264 5 3 HELIX 6 AA6 SER A 271 CYS A 279 1 9 HELIX 7 AA7 PRO A 286 VAL A 291 1 6 HELIX 8 AA8 LYS A 293 SER A 295 5 3 HELIX 9 AA9 PHE A 304 LEU A 307 5 4 HELIX 10 AB1 GLY A 328 ARG A 337 1 10 HELIX 11 AB2 ARG A 351 VAL A 353 5 3 HELIX 12 AB3 ALA A 354 HIS A 360 1 7 HELIX 13 AB4 SER A 374 PHE A 386 1 13 HELIX 14 AB5 ASP A 388 ASN A 402 1 15 HELIX 15 AB6 ASN A 402 CYS A 409 1 8 HELIX 16 AB7 ILE A 411 SER A 428 1 18 HELIX 17 AB8 THR A 438 LEU A 450 1 13 HELIX 18 AB9 HIS A 465 ASN A 479 1 15 HELIX 19 AC1 GLU A 486 HIS A 492 1 7 HELIX 20 AC2 ALA A 501 LEU A 507 1 7 HELIX 21 AC3 HIS A 522 LEU A 535 1 14 HELIX 22 AC4 ASP A 557 ASN A 564 1 8 HELIX 23 AC5 LEU A 573 ASN A 585 1 13 HELIX 24 AC6 SER A 590 LYS A 594 5 5 HELIX 25 AC7 SER A 597 LYS A 617 1 21 HELIX 26 AC8 SER A 626 MET A 637 1 12 HELIX 27 AC9 GLU A 639 ASP A 648 1 10 HELIX 28 AD1 THR A 659 ASN A 672 1 14 SHEET 1 AA1 6 ARG A 172 LYS A 175 0 SHEET 2 AA1 6 PRO A 365 GLY A 372 -1 O LEU A 371 N ARG A 172 SHEET 3 AA1 6 THR A 221 GLN A 225 1 N GLN A 225 O ILE A 370 SHEET 4 AA1 6 SER A 345 THR A 350 1 O ILE A 348 N PHE A 224 SHEET 5 AA1 6 ILE A 297 ASP A 302 1 N PHE A 299 O SER A 345 SHEET 6 AA1 6 TYR A 255 HIS A 260 1 N PHE A 257 O LEU A 300 SHEET 1 AA2 2 GLN A 269 ARG A 270 0 SHEET 2 AA2 2 GLU A 326 ARG A 327 -1 O GLU A 326 N ARG A 270 SHEET 1 AA3 3 PHE A 484 GLU A 485 0 SHEET 2 AA3 3 PHE A 517 PHE A 520 -1 O TYR A 518 N PHE A 484 SHEET 3 AA3 3 PHE A 508 LYS A 510 -1 N GLN A 509 O SER A 519 CISPEP 1 GLY A 316 PRO A 317 0 -3.70 CISPEP 2 GLN A 624 PRO A 625 0 0.06 SITE 1 AC1 14 ALA A 227 ALA A 228 ARG A 351 PRO A 352 SITE 2 AC1 14 MET A 408 PHE A 410 ILE A 411 THR A 439 SITE 3 AC1 14 ILE A 574 PHE A 575 ARG A 578 LEU A 628 SITE 4 AC1 14 TYR A 632 MET A 661 SITE 1 AC2 13 ARG A 167 TYR A 168 THR A 169 LEU A 171 SITE 2 AC2 13 GLY A 229 GLY A 231 LYS A 232 THR A 233 SITE 3 AC2 13 ILE A 234 TYR A 381 PRO A 412 TRP A 416 SITE 4 AC2 13 HIS A 522 CRYST1 96.180 96.180 262.540 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010397 0.006003 0.000000 0.00000 SCALE2 0.000000 0.012006 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003809 0.00000