HEADER TRANSFERASE 08-OCT-20 7AMD TITLE IN SITU ASSEMBLY OF CHOLINE ACETYLTRANSFERASE LIGANDS BY A TITLE 2 HYDROTHIOLATION REACTION REVEALS KEY DETERMINANTS FOR INHIBITOR TITLE 3 DESIGN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHOLINE O-ACETYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CHOLINE ACETYLASE; COMPND 5 EC: 2.3.1.6; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CHAT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PJ301 KEYWDS CHAT, INHIBITOR, AVP, HYDROTHIOLATION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.ALLGARDSSON,F.J.EKSTROM,D.WIKTELIUS,T.BERGSTROM,N.HOSTER,C.AKFUR, AUTHOR 2 N.FORSGREN,C.LEJON,M.HEDENSTROM,A.LINUSSON REVDAT 3 31-JAN-24 7AMD 1 REMARK REVDAT 2 03-MAR-21 7AMD 1 JRNL REVDAT 1 28-OCT-20 7AMD 0 JRNL AUTH D.WIKTELIUS,A.ALLGARDSSON,T.BERGSTROM,N.HOSTER,C.AKFUR, JRNL AUTH 2 N.FORSGREN,C.LEJON,M.HEDENSTROM,A.LINUSSON,F.EKSTROM JRNL TITL IN SITU ASSEMBLY OF CHOLINE ACETYLTRANSFERASE LIGANDS BY A JRNL TITL 2 HYDROTHIOLATION REACTION REVEALS KEY DETERMINANTS FOR JRNL TITL 3 INHIBITOR DESIGN. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 60 813 2021 JRNL REFN ESSN 1521-3773 JRNL PMID 33079431 JRNL DOI 10.1002/ANIE.202011989 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 31986 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.840 REMARK 3 FREE R VALUE TEST SET COUNT : 1549 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 5.0000 - 3.9700 0.97 2773 152 0.1559 0.1635 REMARK 3 2 3.9700 - 3.4700 0.97 2723 154 0.1607 0.1981 REMARK 3 3 3.4700 - 3.1500 0.98 2774 139 0.1730 0.2063 REMARK 3 4 3.1500 - 2.9300 0.99 2768 132 0.1863 0.2526 REMARK 3 5 2.9300 - 2.7500 0.99 2752 148 0.1925 0.2199 REMARK 3 6 2.7500 - 2.6200 0.99 2748 147 0.1902 0.2399 REMARK 3 7 2.6200 - 2.5000 0.99 2754 152 0.1865 0.2581 REMARK 3 8 2.5000 - 2.4100 1.00 2760 129 0.1943 0.2400 REMARK 3 9 2.4100 - 2.3200 1.00 2773 117 0.1997 0.2576 REMARK 3 10 2.3200 - 2.2500 1.00 2735 151 0.2018 0.2571 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.207 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.905 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.89 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 4593 REMARK 3 ANGLE : 0.932 6246 REMARK 3 CHIRALITY : 0.389 707 REMARK 3 PLANARITY : 0.006 800 REMARK 3 DIHEDRAL : 20.440 1663 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 12 THROUGH 51 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.5173 -7.3873 86.8966 REMARK 3 T TENSOR REMARK 3 T11: 0.2022 T22: 0.1930 REMARK 3 T33: 0.2105 T12: -0.0227 REMARK 3 T13: -0.0085 T23: 0.0518 REMARK 3 L TENSOR REMARK 3 L11: 2.3551 L22: 2.7552 REMARK 3 L33: 3.6103 L12: -0.0664 REMARK 3 L13: -1.0863 L23: 1.2887 REMARK 3 S TENSOR REMARK 3 S11: 0.0948 S12: -0.3796 S13: -0.1032 REMARK 3 S21: 0.2974 S22: -0.0333 S23: 0.1116 REMARK 3 S31: 0.0761 S32: -0.0620 S33: -0.0426 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 52 THROUGH 109 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.0228 -3.9677 66.8511 REMARK 3 T TENSOR REMARK 3 T11: 0.1853 T22: 0.2527 REMARK 3 T33: 0.2409 T12: -0.0257 REMARK 3 T13: -0.0266 T23: -0.0293 REMARK 3 L TENSOR REMARK 3 L11: 1.2407 L22: 1.5163 REMARK 3 L33: 2.2014 L12: 0.5554 REMARK 3 L13: -0.7393 L23: -1.1899 REMARK 3 S TENSOR REMARK 3 S11: -0.0371 S12: 0.1403 S13: -0.2087 REMARK 3 S21: -0.0321 S22: 0.0033 S23: -0.0755 REMARK 3 S31: 0.1753 S32: -0.1226 S33: 0.0436 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 110 THROUGH 157 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.1969 -4.0437 50.7942 REMARK 3 T TENSOR REMARK 3 T11: 0.2771 T22: 0.3240 REMARK 3 T33: 0.2482 T12: 0.0058 REMARK 3 T13: -0.0177 T23: -0.0725 REMARK 3 L TENSOR REMARK 3 L11: 0.6345 L22: 1.5674 REMARK 3 L33: 3.6660 L12: -0.2722 REMARK 3 L13: -0.2671 L23: -1.6489 REMARK 3 S TENSOR REMARK 3 S11: 0.1170 S12: 0.2018 S13: -0.0761 REMARK 3 S21: -0.0620 S22: -0.0948 S23: -0.0071 REMARK 3 S31: 0.3246 S32: 0.3185 S33: 0.0158 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 158 THROUGH 264 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.8929 8.5205 43.8381 REMARK 3 T TENSOR REMARK 3 T11: 0.2914 T22: 0.3472 REMARK 3 T33: 0.2283 T12: 0.0041 REMARK 3 T13: -0.0594 T23: 0.0086 REMARK 3 L TENSOR REMARK 3 L11: 2.0893 L22: 1.3913 REMARK 3 L33: 1.5931 L12: 0.3550 REMARK 3 L13: -0.8519 L23: -0.3005 REMARK 3 S TENSOR REMARK 3 S11: -0.0469 S12: 0.3779 S13: -0.0733 REMARK 3 S21: -0.3477 S22: 0.0745 S23: 0.1276 REMARK 3 S31: 0.0957 S32: -0.1494 S33: -0.0192 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 265 THROUGH 301 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.8151 17.1893 52.1429 REMARK 3 T TENSOR REMARK 3 T11: 0.2743 T22: 0.3205 REMARK 3 T33: 0.2701 T12: 0.0009 REMARK 3 T13: 0.0220 T23: 0.1008 REMARK 3 L TENSOR REMARK 3 L11: 1.9601 L22: 2.4507 REMARK 3 L33: 3.9638 L12: -0.6435 REMARK 3 L13: 0.7269 L23: 0.2308 REMARK 3 S TENSOR REMARK 3 S11: -0.0345 S12: 0.3733 S13: 0.3309 REMARK 3 S21: -0.3289 S22: -0.0310 S23: -0.1029 REMARK 3 S31: -0.5738 S32: 0.2286 S33: 0.0831 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 302 THROUGH 370 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.7533 7.1688 48.6168 REMARK 3 T TENSOR REMARK 3 T11: 0.2239 T22: 0.2594 REMARK 3 T33: 0.1888 T12: -0.0151 REMARK 3 T13: -0.0183 T23: -0.0139 REMARK 3 L TENSOR REMARK 3 L11: 1.7278 L22: 1.7255 REMARK 3 L33: 2.3015 L12: -0.0474 REMARK 3 L13: -0.3154 L23: -0.1875 REMARK 3 S TENSOR REMARK 3 S11: 0.0635 S12: 0.1936 S13: -0.0428 REMARK 3 S21: -0.2066 S22: -0.0003 S23: 0.0350 REMARK 3 S31: -0.0406 S32: 0.0284 S33: -0.0552 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 371 THROUGH 398 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.1144 20.2821 60.8531 REMARK 3 T TENSOR REMARK 3 T11: 0.2650 T22: 0.1980 REMARK 3 T33: 0.2360 T12: 0.0349 REMARK 3 T13: 0.0217 T23: 0.0307 REMARK 3 L TENSOR REMARK 3 L11: 9.0587 L22: 1.3554 REMARK 3 L33: 4.0620 L12: -1.2026 REMARK 3 L13: 4.9354 L23: -0.6485 REMARK 3 S TENSOR REMARK 3 S11: -0.2970 S12: 0.0819 S13: 0.4253 REMARK 3 S21: -0.0082 S22: 0.0710 S23: 0.1250 REMARK 3 S31: -0.4420 S32: -0.2029 S33: 0.1387 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 399 THROUGH 429 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.1840 6.0957 78.9927 REMARK 3 T TENSOR REMARK 3 T11: 0.1269 T22: 0.1366 REMARK 3 T33: 0.1483 T12: -0.0054 REMARK 3 T13: -0.0251 T23: -0.0205 REMARK 3 L TENSOR REMARK 3 L11: 3.7660 L22: 1.5607 REMARK 3 L33: 2.1604 L12: -0.8781 REMARK 3 L13: -1.0016 L23: 0.6534 REMARK 3 S TENSOR REMARK 3 S11: 0.0105 S12: 0.0350 S13: -0.0603 REMARK 3 S21: 0.0247 S22: 0.0395 S23: -0.1049 REMARK 3 S31: -0.0040 S32: 0.0854 S33: -0.0707 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 430 THROUGH 456 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.6759 -1.7260 75.0522 REMARK 3 T TENSOR REMARK 3 T11: 0.1839 T22: 0.1908 REMARK 3 T33: 0.2044 T12: 0.0167 REMARK 3 T13: -0.0056 T23: 0.0049 REMARK 3 L TENSOR REMARK 3 L11: 1.7287 L22: 1.8958 REMARK 3 L33: 3.4930 L12: -0.4989 REMARK 3 L13: -0.2946 L23: 1.6855 REMARK 3 S TENSOR REMARK 3 S11: 0.1237 S12: -0.0630 S13: -0.0174 REMARK 3 S21: 0.0526 S22: -0.0894 S23: 0.0505 REMARK 3 S31: 0.1764 S32: -0.1586 S33: -0.1132 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 457 THROUGH 516 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.9671 -1.2129 84.9923 REMARK 3 T TENSOR REMARK 3 T11: 0.1839 T22: 0.1651 REMARK 3 T33: 0.1577 T12: -0.0164 REMARK 3 T13: -0.0043 T23: 0.0555 REMARK 3 L TENSOR REMARK 3 L11: 3.0865 L22: 1.4217 REMARK 3 L33: 1.3801 L12: 0.9449 REMARK 3 L13: 1.3184 L23: 0.7475 REMARK 3 S TENSOR REMARK 3 S11: 0.0732 S12: -0.1870 S13: -0.2139 REMARK 3 S21: 0.0679 S22: 0.0091 S23: -0.0813 REMARK 3 S31: -0.0110 S32: -0.0178 S33: -0.0654 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 517 THROUGH 559 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.0777 4.0597 74.6473 REMARK 3 T TENSOR REMARK 3 T11: 0.2052 T22: 0.1907 REMARK 3 T33: 0.2229 T12: 0.0190 REMARK 3 T13: -0.0501 T23: 0.0112 REMARK 3 L TENSOR REMARK 3 L11: 1.4741 L22: 1.1807 REMARK 3 L33: 0.9804 L12: 0.5929 REMARK 3 L13: -0.1970 L23: 0.1412 REMARK 3 S TENSOR REMARK 3 S11: 0.1372 S12: -0.1262 S13: 0.0235 REMARK 3 S21: 0.0608 S22: -0.0712 S23: 0.0739 REMARK 3 S31: -0.0705 S32: 0.0425 S33: -0.0547 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 560 THROUGH 606 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.4691 13.1039 75.6312 REMARK 3 T TENSOR REMARK 3 T11: 0.2233 T22: 0.1731 REMARK 3 T33: 0.2158 T12: -0.0298 REMARK 3 T13: -0.0032 T23: -0.0104 REMARK 3 L TENSOR REMARK 3 L11: 3.2222 L22: 1.1485 REMARK 3 L33: 1.4500 L12: -0.7918 REMARK 3 L13: 1.1447 L23: -0.6611 REMARK 3 S TENSOR REMARK 3 S11: -0.1172 S12: 0.0754 S13: 0.2199 REMARK 3 S21: 0.0338 S22: -0.0070 S23: -0.1407 REMARK 3 S31: -0.1310 S32: 0.1496 S33: 0.1216 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 607 THROUGH 607 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.5174 2.2235 89.1373 REMARK 3 T TENSOR REMARK 3 T11: 0.8233 T22: 0.7339 REMARK 3 T33: 1.0461 T12: -0.2742 REMARK 3 T13: -0.2188 T23: 0.0203 REMARK 3 L TENSOR REMARK 3 L11: 0.0027 L22: 9.2139 REMARK 3 L33: 2.2252 L12: -0.1588 REMARK 3 L13: 0.0780 L23: -4.5280 REMARK 3 S TENSOR REMARK 3 S11: 0.2351 S12: 2.8796 S13: -1.8398 REMARK 3 S21: 1.6783 S22: 1.0421 S23: -8.4068 REMARK 3 S31: -8.2664 S32: 11.2067 S33: -1.2605 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: TLS REFINEMENT WAS EMPLOYED REMARK 4 REMARK 4 7AMD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-OCT-20. REMARK 100 THE DEPOSITION ID IS D_1292105906. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87313 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : KB MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 X 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS JAN 26, 2018 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.1 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32030 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 45.920 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.43800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX 1.14_3260 REMARK 200 STARTING MODEL: 2FY2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% (W/V) PEG 3350, 0.1M TRIS-HCL PH REMARK 280 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.30700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 84.79850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.91800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 84.79850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.30700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.91800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 LYS A 4 REMARK 465 THR A 5 REMARK 465 PRO A 6 REMARK 465 SER A 7 REMARK 465 SER A 8 REMARK 465 GLU A 9 REMARK 465 GLU A 10 REMARK 465 SER A 11 REMARK 465 ALA A 174 REMARK 465 GLN A 175 REMARK 465 ASN A 176 REMARK 465 SER A 177 REMARK 465 SER A 178 REMARK 465 ILE A 179 REMARK 465 MET A 180 REMARK 465 PRO A 181 REMARK 465 PRO A 349 REMARK 465 GLU A 350 REMARK 465 LEU A 351 REMARK 465 VAL A 352 REMARK 465 ARG A 353 REMARK 465 SER A 354 REMARK 465 PRO A 355 REMARK 465 MET A 356 REMARK 465 VAL A 357 REMARK 465 PRO A 358 REMARK 465 PRO A 608 REMARK 465 PRO A 609 REMARK 465 THR A 610 REMARK 465 GLU A 611 REMARK 465 SER A 612 REMARK 465 LYS A 613 REMARK 465 PRO A 614 REMARK 465 LEU A 615 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 38 CG CD OE1 OE2 REMARK 470 GLU A 39 CG CD OE1 OE2 REMARK 470 LYS A 43 CG CD CE NZ REMARK 470 ARG A 104 CG CD NE CZ NH1 NH2 REMARK 470 SER A 135 OG REMARK 470 ILE A 136 CG1 CG2 CD1 REMARK 470 LYS A 153 CG CD CE NZ REMARK 470 GLU A 182 CG CD OE1 OE2 REMARK 470 VAL A 200 CG1 CG2 REMARK 470 ILE A 201 CG1 CG2 CD1 REMARK 470 ASN A 202 CG OD1 ND2 REMARK 470 ARG A 204 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 228 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 279 CG CD OE1 OE2 REMARK 470 LYS A 297 CG CD CE NZ REMARK 470 LYS A 341 CG CD CE NZ REMARK 470 THR A 344 OG1 CG2 REMARK 470 GLN A 345 CG CD OE1 NE2 REMARK 470 LYS A 368 CG CD CE NZ REMARK 470 GLU A 382 CG CD OE1 OE2 REMARK 470 LYS A 383 CG CD CE NZ REMARK 470 GLU A 547 CG CD OE1 OE2 REMARK 470 LEU A 607 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 85 -67.33 -124.95 REMARK 500 VAL A 94 -57.29 66.96 REMARK 500 SER A 96 -55.93 -133.60 REMARK 500 ASN A 202 58.00 121.70 REMARK 500 LYS A 297 -104.42 -121.40 REMARK 500 ASN A 301 47.90 -82.02 REMARK 500 GLU A 446 15.93 56.14 REMARK 500 ARG A 448 -98.07 -112.01 REMARK 500 ALA A 501 -168.29 -77.47 REMARK 500 THR A 546 -161.07 -122.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 205 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 702 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 450 OD1 REMARK 620 2 ASN A 504 OD1 75.0 REMARK 620 3 HOH A 872 O 138.3 114.9 REMARK 620 4 HOH A 959 O 118.6 65.8 101.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 703 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 578 O REMARK 620 2 CYS A 581 O 88.5 REMARK 620 3 THR A 584 O 167.1 93.6 REMARK 620 4 THR A 584 OG1 80.9 81.1 86.8 REMARK 620 5 HOH A 954 O 104.6 73.0 88.2 153.2 REMARK 620 N 1 2 3 4 DBREF 7AMD A 2 615 UNP P28329 CLAT_HUMAN 120 733 SEQADV 7AMD ALA A 1 UNP P28329 EXPRESSION TAG SEQADV 7AMD ALA A 225 UNP P28329 GLU 343 ENGINEERED MUTATION SEQADV 7AMD ALA A 226 UNP P28329 ASP 344 ENGINEERED MUTATION SEQADV 7AMD ALA A 227 UNP P28329 GLU 345 ENGINEERED MUTATION SEQADV 7AMD MET A 343 UNP P28329 VAL 461 CONFLICT SEQADV 7AMD PRO A 349 UNP P28329 SER 464 CONFLICT SEQADV 7AMD A UNP P28329 SER 465 DELETION SEQADV 7AMD A UNP P28329 ARG 466 DELETION SEQADV 7AMD GLU A 350 UNP P28329 LYS 467 CONFLICT SEQADV 7AMD VAL A 352 UNP P28329 ILE 469 CONFLICT SEQADV 7AMD SER A 354 UNP P28329 ALA 471 CONFLICT SEQADV 7AMD PRO A 355 UNP P28329 ASP 472 CONFLICT SEQADV 7AMD MET A 356 UNP P28329 SER 473 CONFLICT SEQADV 7AMD PRO A 358 UNP P28329 SER 475 CONFLICT SEQADV 7AMD A UNP P28329 GLU 476 DELETION SEQADV 7AMD ALA A 518 UNP P28329 LYS 636 ENGINEERED MUTATION SEQADV 7AMD ALA A 519 UNP P28329 GLU 637 ENGINEERED MUTATION SEQADV 7AMD ALA A 582 UNP P28329 LYS 700 ENGINEERED MUTATION SEQADV 7AMD ALA A 583 UNP P28329 GLU 701 ENGINEERED MUTATION SEQRES 1 A 612 ALA ALA ALA LYS THR PRO SER SER GLU GLU SER GLY LEU SEQRES 2 A 612 PRO LYS LEU PRO VAL PRO PRO LEU GLN GLN THR LEU ALA SEQRES 3 A 612 THR TYR LEU GLN CYS MET ARG HIS LEU VAL SER GLU GLU SEQRES 4 A 612 GLN PHE ARG LYS SER GLN ALA ILE VAL GLN GLN PHE GLY SEQRES 5 A 612 ALA PRO GLY GLY LEU GLY GLU THR LEU GLN GLN LYS LEU SEQRES 6 A 612 LEU GLU ARG GLN GLU LYS THR ALA ASN TRP VAL SER GLU SEQRES 7 A 612 TYR TRP LEU ASN ASP MET TYR LEU ASN ASN ARG LEU ALA SEQRES 8 A 612 LEU PRO VAL ASN SER SER PRO ALA VAL ILE PHE ALA ARG SEQRES 9 A 612 GLN HIS PHE PRO GLY THR ASP ASP GLN LEU ARG PHE ALA SEQRES 10 A 612 ALA SER LEU ILE SER GLY VAL LEU SER TYR LYS ALA LEU SEQRES 11 A 612 LEU ASP SER HIS SER ILE PRO THR ASP CYS ALA LYS GLY SEQRES 12 A 612 GLN LEU SER GLY GLN PRO LEU CYS MET LYS GLN TYR TYR SEQRES 13 A 612 GLY LEU PHE SER SER TYR ARG LEU PRO GLY HIS THR GLN SEQRES 14 A 612 ASP THR LEU VAL ALA GLN ASN SER SER ILE MET PRO GLU SEQRES 15 A 612 PRO GLU HIS VAL ILE VAL ALA CYS CYS ASN GLN PHE PHE SEQRES 16 A 612 VAL LEU ASP VAL VAL ILE ASN PHE ARG ARG LEU SER GLU SEQRES 17 A 612 GLY ASP LEU PHE THR GLN LEU ARG LYS ILE VAL LYS MET SEQRES 18 A 612 ALA SER ASN ALA ALA ALA ARG LEU PRO PRO ILE GLY LEU SEQRES 19 A 612 LEU THR SER ASP GLY ARG SER GLU TRP ALA GLU ALA ARG SEQRES 20 A 612 THR VAL LEU VAL LYS ASP SER THR ASN ARG ASP SER LEU SEQRES 21 A 612 ASP MET ILE GLU ARG CYS ILE CYS LEU VAL CYS LEU ASP SEQRES 22 A 612 ALA PRO GLY GLY VAL GLU LEU SER ASP THR HIS ARG ALA SEQRES 23 A 612 LEU GLN LEU LEU HIS GLY GLY GLY TYR SER LYS ASN GLY SEQRES 24 A 612 ALA ASN ARG TRP TYR ASP LYS SER LEU GLN PHE VAL VAL SEQRES 25 A 612 GLY ARG ASP GLY THR CYS GLY VAL VAL CYS GLU HIS SER SEQRES 26 A 612 PRO PHE ASP GLY ILE VAL LEU VAL GLN CYS THR GLU HIS SEQRES 27 A 612 LEU LEU LYS HIS MET THR GLN PRO GLU LEU VAL ARG SER SEQRES 28 A 612 PRO MET VAL PRO LEU PRO ALA PRO ARG ARG LEU ARG TRP SEQRES 29 A 612 LYS CYS SER PRO GLU ILE GLN GLY HIS LEU ALA SER SER SEQRES 30 A 612 ALA GLU LYS LEU GLN ARG ILE VAL LYS ASN LEU ASP PHE SEQRES 31 A 612 ILE VAL TYR LYS PHE ASP ASN TYR GLY LYS THR PHE ILE SEQRES 32 A 612 LYS LYS GLN LYS CYS SER PRO ASP ALA PHE ILE GLN VAL SEQRES 33 A 612 ALA LEU GLN LEU ALA PHE TYR ARG LEU HIS ARG ARG LEU SEQRES 34 A 612 VAL PRO THR TYR GLU SER ALA SER ILE ARG ARG PHE GLN SEQRES 35 A 612 GLU GLY ARG VAL ASP ASN ILE ARG SER ALA THR PRO GLU SEQRES 36 A 612 ALA LEU ALA PHE VAL ARG ALA VAL THR ASP HIS LYS ALA SEQRES 37 A 612 ALA VAL PRO ALA SER GLU LYS LEU LEU LEU LEU LYS ASP SEQRES 38 A 612 ALA ILE ARG ALA GLN THR ALA TYR THR VAL MET ALA ILE SEQRES 39 A 612 THR GLY MET ALA ILE ASP ASN HIS LEU LEU ALA LEU ARG SEQRES 40 A 612 GLU LEU ALA ARG ALA MET CYS ALA ALA LEU PRO GLU MET SEQRES 41 A 612 PHE MET ASP GLU THR TYR LEU MET SER ASN ARG PHE VAL SEQRES 42 A 612 LEU SER THR SER GLN VAL PRO THR THR THR GLU MET PHE SEQRES 43 A 612 CYS CYS TYR GLY PRO VAL VAL PRO ASN GLY TYR GLY ALA SEQRES 44 A 612 CYS TYR ASN PRO GLN PRO GLU THR ILE LEU PHE CYS ILE SEQRES 45 A 612 SER SER PHE HIS SER CYS ALA ALA THR SER SER SER LYS SEQRES 46 A 612 PHE ALA LYS ALA VAL GLU GLU SER LEU ILE ASP MET ARG SEQRES 47 A 612 ASP LEU CYS SER LEU LEU PRO PRO THR GLU SER LYS PRO SEQRES 48 A 612 LEU HET RMW A 701 67 HET NA A 702 1 HET NA A 703 1 HETNAM RMW [[(2~{R},3~{S},4~{R},5~{R})-5-(6-AMINOPURIN-9-YL)-4- HETNAM 2 RMW OXIDANYL-3-PHOSPHONOOXY-OXOLAN-2-YL]METHOXY-OXIDANYL- HETNAM 3 RMW PHOSPHORYL] [(3~{R})-2,2-DIMETHYL-4-[[3-[2-[(1~{R})-2- HETNAM 4 RMW (1-METHYLPYRIDIN-4-YL)-1-NAPHTHALEN-1-YL- HETNAM 5 RMW ETHYL]SULFANYLETHYLAMINO]-3-OXIDANYLIDENE- HETNAM 6 RMW PROPYL]AMINO]-3-OXIDANYL-4-OXIDANYLIDENE-BUTYL] HETNAM 7 RMW HYDROGEN PHOSPHATE HETNAM NA SODIUM ION FORMUL 2 RMW C39 H52 N8 O16 P3 S 1+ FORMUL 3 NA 2(NA 1+) FORMUL 5 HOH *210(H2 O) HELIX 1 AA1 PRO A 20 ARG A 33 1 14 HELIX 2 AA2 HIS A 34 VAL A 36 5 3 HELIX 3 AA3 SER A 37 GLY A 52 1 16 HELIX 4 AA4 GLY A 56 THR A 72 1 17 HELIX 5 AA5 VAL A 76 TYR A 85 1 10 HELIX 6 AA6 GLY A 109 HIS A 134 1 26 HELIX 7 AA7 MET A 152 LEU A 158 5 7 HELIX 8 AA8 SER A 207 SER A 223 1 17 HELIX 9 AA9 ASN A 224 ARG A 228 5 5 HELIX 10 AB1 PRO A 231 ASP A 238 5 8 HELIX 11 AB2 GLY A 239 VAL A 251 1 13 HELIX 12 AB3 ASP A 253 ARG A 265 1 13 HELIX 13 AB4 SER A 281 GLY A 292 1 12 HELIX 14 AB5 ASP A 328 MET A 343 1 16 HELIX 15 AB6 SER A 370 ASN A 390 1 21 HELIX 16 AB7 GLY A 402 LYS A 408 1 7 HELIX 17 AB8 SER A 412 ARG A 430 1 19 HELIX 18 AB9 THR A 456 ASP A 468 1 13 HELIX 19 AC1 PRO A 474 THR A 498 1 25 HELIX 20 AC2 ILE A 502 CYS A 517 1 16 HELIX 21 AC3 PRO A 521 ASP A 526 1 6 HELIX 22 AC4 ASP A 526 ASN A 533 1 8 HELIX 23 AC5 SER A 585 SER A 605 1 21 SHEET 1 AA1 8 ARG A 363 ARG A 364 0 SHEET 2 AA1 8 GLN A 193 VAL A 200 -1 N VAL A 196 O ARG A 363 SHEET 3 AA1 8 GLU A 184 CYS A 190 -1 N VAL A 186 O LEU A 197 SHEET 4 AA1 8 LEU A 269 LEU A 272 1 O LEU A 272 N ALA A 189 SHEET 5 AA1 8 LEU A 308 VAL A 312 1 O PHE A 310 N CYS A 271 SHEET 6 AA1 8 CYS A 318 CYS A 322 -1 O VAL A 321 N GLN A 309 SHEET 7 AA1 8 ALA A 99 ILE A 101 -1 N VAL A 100 O VAL A 320 SHEET 8 AA1 8 PHE A 549 CYS A 551 -1 O PHE A 549 N ILE A 101 SHEET 1 AA2 2 TYR A 162 LEU A 164 0 SHEET 2 AA2 2 THR A 171 VAL A 173 -1 O VAL A 173 N TYR A 162 SHEET 1 AA3 6 LEU A 391 PHE A 398 0 SHEET 2 AA3 6 ILE A 571 PHE A 578 -1 O PHE A 573 N TYR A 396 SHEET 3 AA3 6 TYR A 560 PRO A 566 -1 N GLY A 561 O SER A 576 SHEET 4 AA3 6 LEU A 537 GLN A 541 1 N SER A 538 O ALA A 562 SHEET 5 AA3 6 THR A 435 SER A 440 1 N TYR A 436 O THR A 539 SHEET 6 AA3 6 VAL A 449 ASN A 451 -1 O ASP A 450 N ALA A 439 LINK OD1 ASP A 450 NA NA A 702 1555 1555 2.91 LINK OD1 ASN A 504 NA NA A 702 1555 1555 3.04 LINK O PHE A 578 NA NA A 703 1555 1555 2.52 LINK O CYS A 581 NA NA A 703 1555 1555 2.42 LINK O THR A 584 NA NA A 703 1555 1555 2.26 LINK OG1 THR A 584 NA NA A 703 1555 1555 2.16 LINK NA NA A 702 O HOH A 872 1555 1555 2.66 LINK NA NA A 702 O HOH A 959 1555 1555 2.40 LINK NA NA A 703 O HOH A 954 1555 1555 2.80 CRYST1 54.614 71.836 169.597 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018310 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013921 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005896 0.00000