HEADER PROTEIN BINDING 08-OCT-20 7AMH TITLE SMBRD3(2), SECOND BROMODOMAIN OF BROMODOMAIN 3 FROM SCHISTOSOMA TITLE 2 MANSONI IN COMPLEX WITH DM-A-33, AN IBET726 ANALOGUE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE BROMODOMAIN-CONTAINING PROTEIN 3, BRD3; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHISTOSOMA MANSONI; SOURCE 3 ORGANISM_COMMON: BLOOD FLUKE; SOURCE 4 ORGANISM_TAXID: 6183; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BROMO DOMAIN, METHYLLYSINE BINDING, EPIGENETIC READER DOMAIN, KEYWDS 2 INHIBITOR, COMPLEX, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR D.MCARDLE,M.SCHIEDEL,M.A.MCDONOUGH,S.J.CONWAY REVDAT 2 31-JAN-24 7AMH 1 REMARK REVDAT 1 20-OCT-21 7AMH 0 JRNL AUTH D.J.B.MCARDLE,M.SCHIEDEL,M.A.MCDONOUGH,S.J.CONWAY JRNL TITL SBM3_2, SECOND BROMODOMAIN OF BROMODOMAIN 3 FROM SCHISTOSOMA JRNL TITL 2 MANSONI IN COMPLEX WITH DM1, AN IBET726 ANALOGUE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 63.37 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 3 NUMBER OF REFLECTIONS : 42925 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 2157 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 63.3680 - 4.5940 1.00 2845 159 0.2109 0.2205 REMARK 3 2 4.5940 - 3.6465 1.00 2850 165 0.1655 0.2286 REMARK 3 3 3.6465 - 3.1856 1.00 2872 123 0.1881 0.2305 REMARK 3 4 3.1856 - 2.8943 1.00 2818 167 0.1998 0.2359 REMARK 3 5 2.8943 - 2.6869 1.00 2857 157 0.2087 0.2596 REMARK 3 6 2.6869 - 2.5285 1.00 2864 142 0.2054 0.2328 REMARK 3 7 2.5285 - 2.4018 1.00 2839 158 0.2183 0.2268 REMARK 3 8 2.4018 - 2.2973 1.00 2858 163 0.2315 0.2554 REMARK 3 9 2.2973 - 2.2088 0.99 2812 161 0.2485 0.3033 REMARK 3 10 2.2088 - 2.1326 1.00 2835 156 0.2615 0.2794 REMARK 3 11 2.1326 - 2.0659 1.00 2792 165 0.2901 0.3097 REMARK 3 12 2.0659 - 2.0069 0.99 2858 120 0.3202 0.3570 REMARK 3 13 2.0069 - 1.9540 0.89 2608 114 0.3399 0.3363 REMARK 3 14 1.9540 - 1.9063 0.82 2313 115 0.3514 0.3881 REMARK 3 15 1.9063 - 1.8630 0.61 1747 92 0.3752 0.4317 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.910 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 15 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.3074 73.9984 38.4040 REMARK 3 T TENSOR REMARK 3 T11: 0.3060 T22: 0.6099 REMARK 3 T33: 0.4864 T12: -0.1342 REMARK 3 T13: -0.0100 T23: -0.0379 REMARK 3 L TENSOR REMARK 3 L11: 6.3506 L22: 8.7530 REMARK 3 L33: 4.3526 L12: -1.1316 REMARK 3 L13: -3.4823 L23: 2.8893 REMARK 3 S TENSOR REMARK 3 S11: 0.0262 S12: -0.2652 S13: 0.7369 REMARK 3 S21: 0.2316 S22: 0.5400 S23: -1.2617 REMARK 3 S31: -0.0160 S32: 1.8117 S33: -0.4739 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 40 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.0927 80.4843 50.6346 REMARK 3 T TENSOR REMARK 3 T11: 0.4763 T22: 0.5758 REMARK 3 T33: 0.4870 T12: -0.2401 REMARK 3 T13: -0.0161 T23: -0.0994 REMARK 3 L TENSOR REMARK 3 L11: 8.0487 L22: 7.3650 REMARK 3 L33: 3.1999 L12: -3.1301 REMARK 3 L13: 0.5686 L23: 4.1822 REMARK 3 S TENSOR REMARK 3 S11: 0.0187 S12: -0.9352 S13: 1.2676 REMARK 3 S21: 0.5141 S22: 0.0984 S23: -0.8668 REMARK 3 S31: -0.2599 S32: 0.6744 S33: -0.0399 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 41 THROUGH 66 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.4241 65.3407 48.5836 REMARK 3 T TENSOR REMARK 3 T11: 0.1505 T22: 0.1879 REMARK 3 T33: 0.1890 T12: 0.0329 REMARK 3 T13: 0.0033 T23: -0.0150 REMARK 3 L TENSOR REMARK 3 L11: 3.1448 L22: 4.2985 REMARK 3 L33: 8.7108 L12: 1.0145 REMARK 3 L13: -3.1555 L23: -2.3539 REMARK 3 S TENSOR REMARK 3 S11: -0.0476 S12: -0.1088 S13: -0.2111 REMARK 3 S21: 0.1093 S22: 0.0475 S23: -0.1196 REMARK 3 S31: 0.2117 S32: 0.2442 S33: -0.0341 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 67 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.5063 68.8271 38.7866 REMARK 3 T TENSOR REMARK 3 T11: 0.2407 T22: 0.2878 REMARK 3 T33: 0.1802 T12: -0.0457 REMARK 3 T13: -0.0194 T23: -0.0309 REMARK 3 L TENSOR REMARK 3 L11: 7.8601 L22: 1.6944 REMARK 3 L33: 5.2808 L12: -1.3751 REMARK 3 L13: -4.6410 L23: 0.5003 REMARK 3 S TENSOR REMARK 3 S11: 0.0251 S12: 0.2331 S13: -0.0979 REMARK 3 S21: -0.1474 S22: -0.0494 S23: -0.1794 REMARK 3 S31: -0.2037 S32: 0.4015 S33: 0.0301 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 101 THROUGH 127 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.3823 79.9866 39.2250 REMARK 3 T TENSOR REMARK 3 T11: 0.4976 T22: 0.1816 REMARK 3 T33: 0.2924 T12: -0.0390 REMARK 3 T13: 0.0114 T23: 0.0395 REMARK 3 L TENSOR REMARK 3 L11: 7.5443 L22: 2.6212 REMARK 3 L33: 8.4450 L12: 2.0615 REMARK 3 L13: -6.0158 L23: -1.8947 REMARK 3 S TENSOR REMARK 3 S11: 0.2864 S12: 0.3344 S13: 0.3912 REMARK 3 S21: -0.2616 S22: -0.1007 S23: -0.2345 REMARK 3 S31: -0.8745 S32: -0.1496 S33: -0.2807 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 16 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.7868 46.1176 45.1033 REMARK 3 T TENSOR REMARK 3 T11: 0.3975 T22: 0.3119 REMARK 3 T33: 0.3393 T12: -0.0319 REMARK 3 T13: -0.0235 T23: -0.0802 REMARK 3 L TENSOR REMARK 3 L11: 7.4377 L22: 7.8360 REMARK 3 L33: 2.3457 L12: 1.8470 REMARK 3 L13: 3.0288 L23: -0.3516 REMARK 3 S TENSOR REMARK 3 S11: 0.0818 S12: 0.6594 S13: -0.8499 REMARK 3 S21: -0.7724 S22: -0.1306 S23: 0.6322 REMARK 3 S31: 0.4602 S32: 0.0600 S33: 0.0779 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 32 THROUGH 40 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.5633 47.3789 54.3218 REMARK 3 T TENSOR REMARK 3 T11: 0.3843 T22: 0.3035 REMARK 3 T33: 0.3727 T12: -0.0036 REMARK 3 T13: 0.0095 T23: -0.0158 REMARK 3 L TENSOR REMARK 3 L11: 6.7892 L22: 7.6330 REMARK 3 L33: 2.9037 L12: 0.8329 REMARK 3 L13: 1.7237 L23: 4.4854 REMARK 3 S TENSOR REMARK 3 S11: 0.0296 S12: 0.0274 S13: -0.2067 REMARK 3 S21: -0.5469 S22: 0.6240 S23: -0.7316 REMARK 3 S31: 0.5709 S32: 0.6855 S33: -0.5531 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 41 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.8461 51.0673 65.4528 REMARK 3 T TENSOR REMARK 3 T11: 0.1858 T22: 0.3685 REMARK 3 T33: 0.2480 T12: -0.0775 REMARK 3 T13: -0.0085 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 2.5118 L22: 2.1798 REMARK 3 L33: 8.8879 L12: 0.7879 REMARK 3 L13: 2.2821 L23: 2.8924 REMARK 3 S TENSOR REMARK 3 S11: 0.1572 S12: -0.0508 S13: -0.1127 REMARK 3 S21: 0.1583 S22: -0.2540 S23: 0.2059 REMARK 3 S31: 0.4441 S32: -0.7398 S33: 0.1105 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 76 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.1222 55.6641 55.1331 REMARK 3 T TENSOR REMARK 3 T11: 0.2104 T22: 0.4178 REMARK 3 T33: 0.2616 T12: 0.0567 REMARK 3 T13: -0.0216 T23: -0.0263 REMARK 3 L TENSOR REMARK 3 L11: 4.2123 L22: 0.9874 REMARK 3 L33: 8.3599 L12: 1.2763 REMARK 3 L13: 4.0984 L23: 1.6112 REMARK 3 S TENSOR REMARK 3 S11: 0.0856 S12: -0.2272 S13: 0.0200 REMARK 3 S21: -0.0080 S22: -0.2343 S23: 0.2908 REMARK 3 S31: -0.0172 S32: -0.9278 S33: 0.2272 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 101 THROUGH 128 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.2123 57.6224 51.0755 REMARK 3 T TENSOR REMARK 3 T11: 0.2553 T22: 0.2770 REMARK 3 T33: 0.2388 T12: 0.0422 REMARK 3 T13: 0.0382 T23: 0.0045 REMARK 3 L TENSOR REMARK 3 L11: 9.2453 L22: 5.0021 REMARK 3 L33: 3.5614 L12: 1.8661 REMARK 3 L13: 4.7315 L23: 0.9445 REMARK 3 S TENSOR REMARK 3 S11: 0.2044 S12: 0.2756 S13: -0.0472 REMARK 3 S21: -0.2019 S22: -0.2380 S23: 0.0950 REMARK 3 S31: -0.1362 S32: 0.1425 S33: 0.0665 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7AMH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-OCT-20. REMARK 100 THE DEPOSITION ID IS D_1292111692. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9119 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42925 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.863 REMARK 200 RESOLUTION RANGE LOW (A) : 63.368 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 11.70 REMARK 200 R MERGE (I) : 0.22700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 4.36900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7AMC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM DIHYDROGEN PHOSPHATE REMARK 280 MONOHYDRATE, 20% W/V PEG 3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.36800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.36800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 26.10050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 42.05550 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 26.10050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 42.05550 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 63.36800 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 26.10050 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 42.05550 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 63.36800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 26.10050 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 42.05550 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 387 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 PRO A 2 REMARK 465 LYS A 3 REMARK 465 ARG A 4 REMARK 465 GLU A 5 REMARK 465 TYR A 6 REMARK 465 GLU A 7 REMARK 465 GLU A 8 REMARK 465 ARG A 9 REMARK 465 ASN A 10 REMARK 465 VAL A 11 REMARK 465 GLY A 12 REMARK 465 LYS A 13 REMARK 465 ARG A 14 REMARK 465 GLU A 128 REMARK 465 SER A 129 REMARK 465 SER B 1 REMARK 465 PRO B 2 REMARK 465 LYS B 3 REMARK 465 ARG B 4 REMARK 465 GLU B 5 REMARK 465 TYR B 6 REMARK 465 GLU B 7 REMARK 465 GLU B 8 REMARK 465 ARG B 9 REMARK 465 ASN B 10 REMARK 465 VAL B 11 REMARK 465 GLY B 12 REMARK 465 LYS B 13 REMARK 465 ARG B 14 REMARK 465 LEU B 15 REMARK 465 SER B 129 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 15 CG CD1 CD2 REMARK 470 ARG A 16 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 38 CG OD1 OD2 REMARK 470 ARG B 16 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 354 O HOH B 373 2.04 REMARK 500 O HOH B 323 O HOH B 376 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 57 CD1 TYR A 57 CE1 -0.090 REMARK 500 CYS B 24 CB CYS B 24 SG -0.096 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue RN5 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue RN5 B 201 DBREF1 7AMH A 2 129 UNP A0A5K4EQL3_SCHMA DBREF2 7AMH A A0A5K4EQL3 235 362 DBREF1 7AMH B 2 129 UNP A0A5K4EQL3_SCHMA DBREF2 7AMH B A0A5K4EQL3 235 362 SEQADV 7AMH SER A 1 UNP A0A5K4EQL EXPRESSION TAG SEQADV 7AMH SER B 1 UNP A0A5K4EQL EXPRESSION TAG SEQRES 1 A 129 SER PRO LYS ARG GLU TYR GLU GLU ARG ASN VAL GLY LYS SEQRES 2 A 129 ARG LEU ARG LEU SER GLU ALA LEU LYS ALA CYS SER ASN SEQRES 3 A 129 ILE LEU LYS ASP ILE SER SER GLN ARG TYR ARG ASP LEU SEQRES 4 A 129 ASN HIS PHE PHE LEU LYS PRO VAL ASP VAL VAL ALA LEU SEQRES 5 A 129 GLY LEU HIS ASP TYR TYR ASP VAL VAL LYS LYS ALA MET SEQRES 6 A 129 ASP LEU SER THR ILE LYS THR LYS LEU GLU SER GLY GLN SEQRES 7 A 129 TYR HIS THR LYS TYR ASP PHE ALA ASP ASP VAL ARG LEU SEQRES 8 A 129 MET PHE ASN ASN CYS TYR LYS TYR ASN GLY GLU ASP SER SEQRES 9 A 129 GLU VAL ALA ARG VAL GLY LYS GLN LEU GLN ALA ILE PHE SEQRES 10 A 129 ASP GLU ASN PHE ALA LYS VAL PRO ASP ASP GLU SER SEQRES 1 B 129 SER PRO LYS ARG GLU TYR GLU GLU ARG ASN VAL GLY LYS SEQRES 2 B 129 ARG LEU ARG LEU SER GLU ALA LEU LYS ALA CYS SER ASN SEQRES 3 B 129 ILE LEU LYS ASP ILE SER SER GLN ARG TYR ARG ASP LEU SEQRES 4 B 129 ASN HIS PHE PHE LEU LYS PRO VAL ASP VAL VAL ALA LEU SEQRES 5 B 129 GLY LEU HIS ASP TYR TYR ASP VAL VAL LYS LYS ALA MET SEQRES 6 B 129 ASP LEU SER THR ILE LYS THR LYS LEU GLU SER GLY GLN SEQRES 7 B 129 TYR HIS THR LYS TYR ASP PHE ALA ASP ASP VAL ARG LEU SEQRES 8 B 129 MET PHE ASN ASN CYS TYR LYS TYR ASN GLY GLU ASP SER SEQRES 9 B 129 GLU VAL ALA ARG VAL GLY LYS GLN LEU GLN ALA ILE PHE SEQRES 10 B 129 ASP GLU ASN PHE ALA LYS VAL PRO ASP ASP GLU SER HET RN5 A 201 56 HET RN5 B 201 56 HETNAM RN5 4-{(2S, 4R)-1-ACETYL-4-[(1-BENZOTHIOPHEN-6-YL)AMINO]-2- HETNAM 2 RN5 METHYL-1,2,3,4-TETRAHYDROQUINOLIN-6-YL}BENZOIC ACID HETSYN RN5 4-[(2~{S},4~{R})-4-(1-BENZOTHIOPHEN-6-YLAMINO)-1- HETSYN 2 RN5 ETHANOYL-2-METHYL-3,4-DIHYDRO-2~{H}-QUINOLIN-6- HETSYN 3 RN5 YL]BENZOIC ACID FORMUL 3 RN5 2(C27 H24 N2 O3 S) FORMUL 5 HOH *207(H2 O) HELIX 1 AA1 SER A 18 SER A 32 1 15 HELIX 2 AA2 SER A 33 ARG A 35 5 3 HELIX 3 AA3 TYR A 36 HIS A 41 1 6 HELIX 4 AA4 ASP A 48 GLY A 53 1 6 HELIX 5 AA5 ASP A 56 VAL A 61 1 6 HELIX 6 AA6 ASP A 66 SER A 76 1 11 HELIX 7 AA7 THR A 81 GLY A 101 1 21 HELIX 8 AA8 SER A 104 ALA A 122 1 19 HELIX 9 AA9 SER B 18 SER B 32 1 15 HELIX 10 AB1 SER B 33 ARG B 35 5 3 HELIX 11 AB2 TYR B 36 HIS B 41 1 6 HELIX 12 AB3 PHE B 42 LEU B 44 5 3 HELIX 13 AB4 ASP B 48 GLY B 53 1 6 HELIX 14 AB5 ASP B 56 VAL B 61 1 6 HELIX 15 AB6 ASP B 66 SER B 76 1 11 HELIX 16 AB7 THR B 81 GLY B 101 1 21 HELIX 17 AB8 SER B 104 ALA B 122 1 19 SITE 1 AC1 8 PHE A 42 LEU A 54 ASN A 100 GLU A 105 SITE 2 AC1 8 HOH A 329 GLN B 34 LEU B 52 RN5 B 201 SITE 1 AC2 11 LEU A 52 RN5 A 201 GLN B 34 PHE B 42 SITE 2 AC2 11 LEU B 52 LEU B 54 ASN B 100 GLU B 105 SITE 3 AC2 11 HOH B 333 HOH B 343 HOH B 373 CRYST1 52.201 84.111 126.736 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019157 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011889 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007890 0.00000