HEADER SIGNALING PROTEIN 09-OCT-20 7AMK TITLE ZEBRAFISH RET CADHERIN LIKE DOMAINS 1 TO 4. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTO-ONCOGENE TYROSINE-PROTEIN KINASE RECEPTOR RET; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.10.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DANIO RERIO; SOURCE 3 ORGANISM_COMMON: ZEBRAFISH; SOURCE 4 ORGANISM_TAXID: 7955; SOURCE 5 GENE: RET, RET1; SOURCE 6 EXPRESSION_SYSTEM: UNIDENTIFIED BACULOVIRUS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10469 KEYWDS LIGAND RECOGNITION, RECEPTOR TYROSINE KINASE, GLYCOSYLATION, KEYWDS 2 SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.G.PURKISS,N.Q.MCDONALD,K.M.GOODMAN,A.NAROWTEK,P.P.KNOWLES REVDAT 3 31-JAN-24 7AMK 1 REMARK REVDAT 2 14-JUL-21 7AMK 1 JRNL REVDAT 1 03-FEB-21 7AMK 0 JRNL AUTH S.E.ADAMS,A.G.PURKISS,P.P.KNOWLES,A.NANS,D.C.BRIGGS,A.BORG, JRNL AUTH 2 C.P.EARL,K.M.GOODMAN,A.NAWROTEK,A.J.BORG,P.B.MCINTOSH, JRNL AUTH 3 F.M.HOUGHTON,S.KJAER,N.Q.MCDONALD JRNL TITL A TWO-SITE FLEXIBLE CLAMP MECHANISM FOR RET-GDNF-GFR ALPHA 1 JRNL TITL 2 ASSEMBLY REVEALS BOTH CONFORMATIONAL ADAPTATION AND STRICT JRNL TITL 3 GEOMETRIC SPACING. JRNL REF STRUCTURE V. 29 694 2021 JRNL REFN ISSN 0969-2126 JRNL PMID 33484636 JRNL DOI 10.1016/J.STR.2020.12.012 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_3965 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 65.96 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.3 REMARK 3 NUMBER OF REFLECTIONS : 62671 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 3097 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 65.9600 - 6.1600 0.99 2944 151 0.2089 0.2110 REMARK 3 2 6.1600 - 4.8900 0.99 2961 138 0.1956 0.2181 REMARK 3 3 4.8900 - 4.2700 0.99 2931 136 0.1749 0.1977 REMARK 3 4 4.2700 - 3.8800 0.99 2972 121 0.1949 0.1977 REMARK 3 5 3.8800 - 3.6100 0.98 2940 138 0.2045 0.2794 REMARK 3 6 3.6000 - 3.3900 0.98 2903 152 0.2114 0.2620 REMARK 3 7 3.3900 - 3.2200 0.99 2927 147 0.2114 0.2681 REMARK 3 8 3.2200 - 3.0800 0.98 2929 134 0.2296 0.3208 REMARK 3 9 3.0800 - 2.9600 0.98 2923 166 0.2405 0.2854 REMARK 3 10 2.9600 - 2.8600 0.98 2890 170 0.2452 0.3123 REMARK 3 11 2.8600 - 2.7700 0.98 2910 162 0.2429 0.2826 REMARK 3 12 2.7700 - 2.6900 0.98 2865 147 0.2429 0.3248 REMARK 3 13 2.6900 - 2.6200 0.98 2963 153 0.2651 0.3183 REMARK 3 14 2.6200 - 2.5600 0.97 2812 168 0.2734 0.3414 REMARK 3 15 2.5600 - 2.5000 0.93 2823 144 0.2748 0.3177 REMARK 3 16 2.5000 - 2.4500 0.90 2658 141 0.2829 0.2907 REMARK 3 17 2.4500 - 2.4000 0.85 2532 135 0.2818 0.3414 REMARK 3 18 2.4000 - 2.3500 0.82 2419 121 0.2818 0.3118 REMARK 3 19 2.3500 - 2.3100 0.78 2336 125 0.2837 0.3519 REMARK 3 20 2.3100 - 2.2700 0.71 2075 118 0.3013 0.3449 REMARK 3 21 2.2700 - 2.2300 0.70 2040 136 0.3032 0.3894 REMARK 3 22 2.2300 - 2.2000 0.63 1821 94 0.3028 0.3631 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.352 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.578 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.87 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 8107 REMARK 3 ANGLE : 0.888 11020 REMARK 3 CHIRALITY : 0.051 1392 REMARK 3 PLANARITY : 0.006 1348 REMARK 3 DIHEDRAL : 14.380 3021 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND ((RESID 23 THROUGH 250 ) OR RESID 801 REMARK 3 OR RESID 806 OR ( RESID 811 THROUGH 818) OR RESID REMARK 3 861) REMARK 3 ORIGIN FOR THE GROUP (A): -12.5154 20.7124 105.6514 REMARK 3 T TENSOR REMARK 3 T11: 0.1978 T22: 0.1360 REMARK 3 T33: 0.2779 T12: -0.0167 REMARK 3 T13: 0.0055 T23: 0.0022 REMARK 3 L TENSOR REMARK 3 L11: 1.6758 L22: 1.8031 REMARK 3 L33: 1.9366 L12: -0.7106 REMARK 3 L13: 0.6174 L23: -0.6216 REMARK 3 S TENSOR REMARK 3 S11: -0.1079 S12: -0.0813 S13: -0.1242 REMARK 3 S21: 0.4045 S22: 0.0167 S23: -0.2343 REMARK 3 S31: 0.1557 S32: -0.0455 S33: 0.0633 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND ((RESID 251 THROUGH 383 ) OR (RESID REMARK 3 821 THROUGH 822) OR (RESID 831 THROUGH 832) OR REMARK 3 (RESID 841 THROUGH 842) OR RESID 891) REMARK 3 ORIGIN FOR THE GROUP (A): -29.5689 12.2716 59.8678 REMARK 3 T TENSOR REMARK 3 T11: 0.3085 T22: 0.2563 REMARK 3 T33: 0.2559 T12: -0.0953 REMARK 3 T13: -0.0015 T23: -0.0123 REMARK 3 L TENSOR REMARK 3 L11: 0.7815 L22: 2.1227 REMARK 3 L33: 6.5605 L12: -0.1226 REMARK 3 L13: 0.5998 L23: 1.8660 REMARK 3 S TENSOR REMARK 3 S11: 0.0414 S12: 0.0614 S13: -0.0364 REMARK 3 S21: -0.3846 S22: 0.0332 S23: 0.0187 REMARK 3 S31: 0.3718 S32: -0.3359 S33: -0.0640 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND ((RESID 384 THROUGH 498 ) OR (RESID REMARK 3 851 THROUGH 852) OR RESID 892) REMARK 3 ORIGIN FOR THE GROUP (A): -11.5290 9.1576 18.9451 REMARK 3 T TENSOR REMARK 3 T11: 0.3850 T22: 0.3223 REMARK 3 T33: 0.5190 T12: 0.0131 REMARK 3 T13: -0.0339 T23: -0.1642 REMARK 3 L TENSOR REMARK 3 L11: 5.4997 L22: 1.2473 REMARK 3 L33: 6.4316 L12: 1.4813 REMARK 3 L13: -3.2644 L23: -1.2166 REMARK 3 S TENSOR REMARK 3 S11: 0.0693 S12: -0.0523 S13: 0.1824 REMARK 3 S21: 0.1095 S22: 0.2362 S23: -0.3952 REMARK 3 S31: 0.0062 S32: 0.8717 S33: -0.2892 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND ((RESID 23 THROUGH 250 ) OR RESID 806 REMARK 3 OR ( RESID 811 THROUGH 814) OR RESID 861) REMARK 3 ORIGIN FOR THE GROUP (A): -21.1150 13.6998 -5.7953 REMARK 3 T TENSOR REMARK 3 T11: 0.2185 T22: 0.1361 REMARK 3 T33: 0.2313 T12: -0.0388 REMARK 3 T13: -0.0162 T23: 0.0465 REMARK 3 L TENSOR REMARK 3 L11: 1.4819 L22: 2.4706 REMARK 3 L33: 1.8999 L12: 0.0979 REMARK 3 L13: 0.1012 L23: 1.0026 REMARK 3 S TENSOR REMARK 3 S11: -0.1375 S12: 0.2355 S13: 0.1305 REMARK 3 S21: -0.0994 S22: 0.1422 S23: -0.2294 REMARK 3 S31: -0.1876 S32: 0.1531 S33: -0.0203 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND ((RESID 251 THROUGH 383 ) OR (RESID REMARK 3 831 THROUGH 832) OR (RESID 841 THROUGH 843) OR RESID REMARK 3 891) REMARK 3 ORIGIN FOR THE GROUP (A): -16.3933 34.5528 39.2359 REMARK 3 T TENSOR REMARK 3 T11: 0.4646 T22: 0.2423 REMARK 3 T33: 0.2759 T12: 0.0220 REMARK 3 T13: -0.0374 T23: 0.0583 REMARK 3 L TENSOR REMARK 3 L11: 1.2015 L22: 0.2357 REMARK 3 L33: 7.4491 L12: 0.0401 REMARK 3 L13: 1.5251 L23: -0.4016 REMARK 3 S TENSOR REMARK 3 S11: -0.1302 S12: -0.1210 S13: -0.1102 REMARK 3 S21: 0.0078 S22: -0.1011 S23: 0.0137 REMARK 3 S31: -0.2621 S32: 0.3541 S33: 0.2158 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND ((RESID 384 THROUGH 498 ) OR (RESID REMARK 3 851 THROUGH 852)) REMARK 3 ORIGIN FOR THE GROUP (A): -5.1047 17.8739 79.6056 REMARK 3 T TENSOR REMARK 3 T11: 0.1274 T22: 0.2009 REMARK 3 T33: 0.2228 T12: 0.0264 REMARK 3 T13: 0.0552 T23: -0.0325 REMARK 3 L TENSOR REMARK 3 L11: 2.1457 L22: 3.5615 REMARK 3 L33: 4.6838 L12: -1.3099 REMARK 3 L13: 1.8395 L23: -2.1155 REMARK 3 S TENSOR REMARK 3 S11: 0.0332 S12: 0.1269 S13: -0.2256 REMARK 3 S21: -0.0805 S22: -0.0870 S23: -0.0940 REMARK 3 S31: 0.2646 S32: 0.2264 S33: 0.0591 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7AMK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-OCT-20. REMARK 100 THE DEPOSITION ID IS D_1292110974. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9787 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : STARANISO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79868 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.080 REMARK 200 RESOLUTION RANGE LOW (A) : 65.960 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.08 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.19 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 1.18600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2X2U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM MES (PH 6.2), 31.5 % PEG MME 350 REMARK 280 (V/V), VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 17760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 47420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 142.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H, I, J, REMARK 350 AND CHAINS: K REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 499 REMARK 465 GLU A 500 REMARK 465 ALA A 501 REMARK 465 ASP A 502 REMARK 465 PRO B 293 REMARK 465 THR B 294 REMARK 465 ASN B 295 REMARK 465 GLN B 296 REMARK 465 GLY B 499 REMARK 465 GLU B 500 REMARK 465 ALA B 501 REMARK 465 ASP B 502 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 28 CD NE CZ NH1 NH2 REMARK 470 PHE A 53 CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 102 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 110 CE NZ REMARK 470 LYS A 120 CE NZ REMARK 470 ILE A 125 CD1 REMARK 470 LYS A 132 NZ REMARK 470 GLU A 147 CD OE1 OE2 REMARK 470 LYS A 156 CG CD CE NZ REMARK 470 ILE A 157 CG1 CG2 CD1 REMARK 470 ASP A 204 CG OD1 OD2 REMARK 470 GLU A 219 CG CD OE1 OE2 REMARK 470 ARG A 232 CD NE CZ NH1 NH2 REMARK 470 ASN A 295 CG OD1 ND2 REMARK 470 GLN A 308 CG CD OE1 NE2 REMARK 470 LYS A 313 CD CE NZ REMARK 470 GLU A 319 CG CD OE1 OE2 REMARK 470 LYS A 321 NZ REMARK 470 ASN A 331 OD1 ND2 REMARK 470 LYS A 340 CE NZ REMARK 470 LYS A 342 CE NZ REMARK 470 GLU A 351 CD OE1 OE2 REMARK 470 ARG A 353 CZ NH1 NH2 REMARK 470 GLU A 370 CG CD OE1 OE2 REMARK 470 GLN A 399 CG CD OE1 NE2 REMARK 470 LYS A 400 CG CD CE NZ REMARK 470 LYS A 409 CD CE NZ REMARK 470 LYS A 419 CG CD CE NZ REMARK 470 GLN A 426 CD OE1 NE2 REMARK 470 ASP A 431 CG OD1 OD2 REMARK 470 ARG A 432 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 433 CG CD OE1 NE2 REMARK 470 GLU A 437 CG CD OE1 OE2 REMARK 470 ASN A 454 CG OD1 ND2 REMARK 470 LYS A 464 CG CD CE NZ REMARK 470 VAL A 465 CG1 CG2 REMARK 470 ARG A 467 CZ NH1 NH2 REMARK 470 GLU A 470 CG CD OE1 OE2 REMARK 470 GLU A 475 CG CD OE1 OE2 REMARK 470 LYS A 486 CG CD CE NZ REMARK 470 LYS A 490 CG CD CE NZ REMARK 470 GLN A 492 CD OE1 NE2 REMARK 470 GLN A 498 CG CD OE1 NE2 REMARK 470 GLN B 40 CG CD OE1 NE2 REMARK 470 HIS B 65 CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 66 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 89 CG CD OE1 OE2 REMARK 470 ARG B 102 NE CZ NH1 NH2 REMARK 470 MET B 119 SD CE REMARK 470 LYS B 120 CG CD CE NZ REMARK 470 LYS B 132 CE NZ REMARK 470 GLU B 155 CG CD OE1 OE2 REMARK 470 LYS B 156 CD CE NZ REMARK 470 ILE B 157 CG1 CG2 CD1 REMARK 470 GLU B 167 CD OE1 OE2 REMARK 470 ASP B 204 CG OD1 OD2 REMARK 470 ARG B 232 CD NE CZ NH1 NH2 REMARK 470 GLU B 234 CG CD OE1 OE2 REMARK 470 SER B 310 OG REMARK 470 LYS B 313 CG CD CE NZ REMARK 470 LYS B 321 CD CE NZ REMARK 470 ASN B 331 CG OD1 ND2 REMARK 470 LYS B 340 CG CD CE NZ REMARK 470 LYS B 400 CG CD CE NZ REMARK 470 TYR B 404 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 419 CE NZ REMARK 470 ARG B 432 CD NE CZ NH1 NH2 REMARK 470 GLN B 433 CG CD OE1 NE2 REMARK 470 GLN B 439 CG CD OE1 NE2 REMARK 470 LYS B 464 CE NZ REMARK 470 ARG B 467 CZ NH1 NH2 REMARK 470 GLU B 470 CG CD OE1 OE2 REMARK 470 GLN B 483 CG CD OE1 NE2 REMARK 470 GLN B 484 CG CD OE1 NE2 REMARK 470 LYS B 486 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 461 C6 FUC G 3 1.38 REMARK 500 O3 NAG D 1 O5 NAG D 2 2.04 REMARK 500 OH TYR A 35 O HOH A 701 2.09 REMARK 500 O GLU B 370 O HOH B 701 2.12 REMARK 500 O SER B 100 O HOH B 702 2.13 REMARK 500 O HOH B 708 O HOH B 814 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 235 OG1 THR A 491 1666 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 411 CA - CB - SG ANGL. DEV. = 8.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 64 31.45 -78.72 REMARK 500 PRO A 199 38.91 -79.01 REMARK 500 ARG A 235 -63.38 -102.13 REMARK 500 GLU A 269 -103.11 -141.30 REMARK 500 MET A 306 58.40 -93.33 REMARK 500 ASP A 309 117.32 -161.96 REMARK 500 LYS A 326 -33.66 -136.90 REMARK 500 ARG A 387 136.67 -176.35 REMARK 500 TYR A 404 1.11 86.34 REMARK 500 ASN A 414 17.29 59.37 REMARK 500 VAL A 430 -71.11 -64.27 REMARK 500 ASN A 450 74.98 -106.74 REMARK 500 PRO A 451 -9.27 -56.33 REMARK 500 ASN A 461 -81.71 -121.11 REMARK 500 HIS B 65 -73.90 -96.33 REMARK 500 SER B 103 116.83 -173.53 REMARK 500 GLU B 269 -97.39 -129.74 REMARK 500 GLN B 352 112.93 -162.23 REMARK 500 TYR B 404 2.51 80.60 REMARK 500 ASN B 461 -85.46 -110.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PGE A 608 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 601 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 164 OE1 REMARK 620 2 ASP A 216 OD1 93.7 REMARK 620 3 GLU A 218 OE1 90.5 86.2 REMARK 620 4 ASP A 253 OD2 87.5 166.0 107.8 REMARK 620 5 HOH A 708 O 87.6 83.6 169.5 82.5 REMARK 620 6 HOH A 782 O 175.4 89.2 86.2 90.5 96.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 602 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 164 OE2 REMARK 620 2 GLU A 218 OE1 91.7 REMARK 620 3 GLU A 218 OE2 124.1 46.9 REMARK 620 4 ASP A 250 OD1 82.6 101.6 74.2 REMARK 620 5 GLU A 251 O 79.2 162.2 149.8 92.4 REMARK 620 6 ASP A 253 OD1 96.6 72.9 102.0 174.5 92.8 REMARK 620 7 ASP A 287 OD1 158.9 102.3 76.6 109.4 83.0 73.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 603 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 252 OD1 REMARK 620 2 ASN A 254 O 98.8 REMARK 620 3 ASP A 285 OD1 157.0 84.4 REMARK 620 4 ASP A 285 OD2 150.3 89.9 51.6 REMARK 620 5 ASP A 287 OD2 76.6 82.9 81.3 132.9 REMARK 620 6 ASN A 299 OD1 76.6 175.3 100.1 93.9 96.5 REMARK 620 7 ASP A 363 OD2 72.3 86.0 130.7 80.1 144.8 91.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 602 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 164 OE2 REMARK 620 2 GLU B 218 OE1 91.7 REMARK 620 3 GLU B 218 OE2 125.2 50.7 REMARK 620 4 ASP B 250 OD1 86.8 105.8 71.6 REMARK 620 5 GLU B 251 O 81.5 161.3 145.7 91.2 REMARK 620 6 ASP B 253 OD1 87.2 73.8 111.6 174.0 88.4 REMARK 620 7 ASP B 287 OD1 157.1 97.2 75.8 110.8 83.4 75.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 603 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 164 OE1 REMARK 620 2 ASP B 216 OD1 91.9 REMARK 620 3 GLU B 218 OE1 84.8 78.5 REMARK 620 4 ASP B 253 OD1 94.6 145.0 68.0 REMARK 620 5 ASP B 253 OD2 92.6 169.7 111.2 43.7 REMARK 620 6 HOH B 720 O 98.9 85.6 163.8 126.9 84.5 REMARK 620 7 HOH B 776 O 166.5 101.2 94.4 72.6 75.1 85.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 601 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 252 OD1 REMARK 620 2 ASN B 254 O 99.3 REMARK 620 3 ASP B 285 OD1 148.6 97.9 REMARK 620 4 ASP B 285 OD2 156.1 86.7 50.8 REMARK 620 5 ASP B 287 OD2 74.2 84.2 81.7 129.7 REMARK 620 6 ASN B 299 OD1 82.1 174.8 83.1 90.1 101.0 REMARK 620 7 ASP B 363 OD2 75.6 90.4 130.3 81.2 148.0 85.1 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7AB8 RELATED DB: PDB REMARK 900 OTHER COMPONENT IN COMPLEX DBREF 7AMK A 23 502 UNP A8E7C6 A8E7C6_DANRE 23 502 DBREF 7AMK B 23 502 UNP A8E7C6 A8E7C6_DANRE 23 502 SEQADV 7AMK GLN A 259 UNP A8E7C6 ASN 259 ENGINEERED MUTATION SEQADV 7AMK GLN A 308 UNP A8E7C6 ASN 308 ENGINEERED MUTATION SEQADV 7AMK GLN A 390 UNP A8E7C6 ASN 390 ENGINEERED MUTATION SEQADV 7AMK GLN A 433 UNP A8E7C6 ASN 433 ENGINEERED MUTATION SEQADV 7AMK GLN B 259 UNP A8E7C6 ASN 259 ENGINEERED MUTATION SEQADV 7AMK GLN B 308 UNP A8E7C6 ASN 308 ENGINEERED MUTATION SEQADV 7AMK GLN B 390 UNP A8E7C6 ASN 390 ENGINEERED MUTATION SEQADV 7AMK GLN B 433 UNP A8E7C6 ASN 433 ENGINEERED MUTATION SEQRES 1 A 480 LEU TYR PHE PRO GLN ARG LEU TYR THR GLU ASN ILE TYR SEQRES 2 A 480 VAL GLY GLN GLN GLN GLY SER PRO LEU LEU GLN VAL ILE SEQRES 3 A 480 SER MET ARG GLU PHE PRO THR GLU ARG PRO TYR PHE PHE SEQRES 4 A 480 LEU CYS SER HIS ARG ASP ALA PHE THR SER TRP PHE HIS SEQRES 5 A 480 ILE ASP GLU ALA SER GLY VAL LEU TYR LEU ASN LYS THR SEQRES 6 A 480 LEU GLU TRP SER ASP PHE SER SER LEU ARG SER GLY SER SEQRES 7 A 480 VAL ARG SER PRO LYS ASP LEU THR LEU LYS VAL GLY VAL SEQRES 8 A 480 SER SER THR PRO PRO MET LYS VAL MET CYS THR ILE LEU SEQRES 9 A 480 PRO THR VAL GLU VAL LYS LEU SER PHE ILE ASN ASP THR SEQRES 10 A 480 ALA PRO SER CYS GLY GLN VAL GLU LEU SER THR LEU CYS SEQRES 11 A 480 PHE PRO GLU LYS ILE SER ASN PRO HIS ILE THR GLU ASN SEQRES 12 A 480 ARG GLU PRO GLY ALA LEU ARG GLN LEU ARG ARG PHE THR SEQRES 13 A 480 HIS MET SER ILE CYS PRO ASN TYR THR ILE SER TYR GLY SEQRES 14 A 480 VAL VAL ALA GLY SER SER VAL PRO PHE ALA VAL ASP ASP SEQRES 15 A 480 SER THR SER GLU LEU VAL VAL THR ALA GLN VAL ASP ARG SEQRES 16 A 480 GLU GLU LYS GLU VAL TYR HIS LEU ASP ILE VAL CYS MET SEQRES 17 A 480 VAL ARG THR GLU ARG ASN LEU GLU GLU VAL PHE ARG SER SEQRES 18 A 480 LEU HIS VAL ASN ILE TYR ASP GLU ASP ASP ASN SER PRO SEQRES 19 A 480 TYR VAL GLN GLY THR ASP THR GLU ASP VAL LEU VAL GLU SEQRES 20 A 480 PHE ASP ARG SER GLU GLY THR VAL PHE GLY THR LEU PHE SEQRES 21 A 480 VAL TYR ASP ARG ASP THR THR PRO VAL TYR PRO THR ASN SEQRES 22 A 480 GLN VAL GLN ASN LYS LEU VAL GLY THR LEU MET THR GLN SEQRES 23 A 480 ASP SER TRP ILE LYS ASN ASN PHE ALA ILE GLU HIS LYS SEQRES 24 A 480 PHE ARG GLU GLU LYS ALA ILE PHE GLY ASN VAL ARG GLY SEQRES 25 A 480 THR VAL HIS GLU TYR LYS LEU LYS LEU SER GLN ASN LEU SEQRES 26 A 480 SER VAL THR GLU GLN ARG SER PHE LEU LEU GLY TYR LEU SEQRES 27 A 480 VAL ASN ASP THR THR PHE PRO GLY PRO GLU GLY THR VAL SEQRES 28 A 480 LEU LEU HIS PHE ASN VAL THR VAL LEU PRO VAL PRO ILE SEQRES 29 A 480 ARG PHE SER GLN VAL THR TYR SER PHE THR VAL SER GLN SEQRES 30 A 480 LYS ALA THR THR TYR SER GLN ILE GLY LYS VAL CYS VAL SEQRES 31 A 480 GLU ASN CYS GLN LYS PHE LYS GLY ILE ASP VAL THR TYR SEQRES 32 A 480 GLN LEU GLU ILE VAL ASP ARG GLN ILE THR ALA GLU ALA SEQRES 33 A 480 GLN SER CYS TYR TRP ALA VAL SER LEU ALA GLN ASN PRO SEQRES 34 A 480 ASN ASP ASN THR GLY VAL LEU TYR VAL ASN ASP THR LYS SEQRES 35 A 480 VAL LEU ARG ARG PRO GLU CYS GLN GLU LEU GLU TYR VAL SEQRES 36 A 480 VAL ILE ALA GLN GLU GLN GLN ASN LYS LEU GLN ALA LYS SEQRES 37 A 480 THR GLN LEU THR VAL SER PHE GLN GLY GLU ALA ASP SEQRES 1 B 480 LEU TYR PHE PRO GLN ARG LEU TYR THR GLU ASN ILE TYR SEQRES 2 B 480 VAL GLY GLN GLN GLN GLY SER PRO LEU LEU GLN VAL ILE SEQRES 3 B 480 SER MET ARG GLU PHE PRO THR GLU ARG PRO TYR PHE PHE SEQRES 4 B 480 LEU CYS SER HIS ARG ASP ALA PHE THR SER TRP PHE HIS SEQRES 5 B 480 ILE ASP GLU ALA SER GLY VAL LEU TYR LEU ASN LYS THR SEQRES 6 B 480 LEU GLU TRP SER ASP PHE SER SER LEU ARG SER GLY SER SEQRES 7 B 480 VAL ARG SER PRO LYS ASP LEU THR LEU LYS VAL GLY VAL SEQRES 8 B 480 SER SER THR PRO PRO MET LYS VAL MET CYS THR ILE LEU SEQRES 9 B 480 PRO THR VAL GLU VAL LYS LEU SER PHE ILE ASN ASP THR SEQRES 10 B 480 ALA PRO SER CYS GLY GLN VAL GLU LEU SER THR LEU CYS SEQRES 11 B 480 PHE PRO GLU LYS ILE SER ASN PRO HIS ILE THR GLU ASN SEQRES 12 B 480 ARG GLU PRO GLY ALA LEU ARG GLN LEU ARG ARG PHE THR SEQRES 13 B 480 HIS MET SER ILE CYS PRO ASN TYR THR ILE SER TYR GLY SEQRES 14 B 480 VAL VAL ALA GLY SER SER VAL PRO PHE ALA VAL ASP ASP SEQRES 15 B 480 SER THR SER GLU LEU VAL VAL THR ALA GLN VAL ASP ARG SEQRES 16 B 480 GLU GLU LYS GLU VAL TYR HIS LEU ASP ILE VAL CYS MET SEQRES 17 B 480 VAL ARG THR GLU ARG ASN LEU GLU GLU VAL PHE ARG SER SEQRES 18 B 480 LEU HIS VAL ASN ILE TYR ASP GLU ASP ASP ASN SER PRO SEQRES 19 B 480 TYR VAL GLN GLY THR ASP THR GLU ASP VAL LEU VAL GLU SEQRES 20 B 480 PHE ASP ARG SER GLU GLY THR VAL PHE GLY THR LEU PHE SEQRES 21 B 480 VAL TYR ASP ARG ASP THR THR PRO VAL TYR PRO THR ASN SEQRES 22 B 480 GLN VAL GLN ASN LYS LEU VAL GLY THR LEU MET THR GLN SEQRES 23 B 480 ASP SER TRP ILE LYS ASN ASN PHE ALA ILE GLU HIS LYS SEQRES 24 B 480 PHE ARG GLU GLU LYS ALA ILE PHE GLY ASN VAL ARG GLY SEQRES 25 B 480 THR VAL HIS GLU TYR LYS LEU LYS LEU SER GLN ASN LEU SEQRES 26 B 480 SER VAL THR GLU GLN ARG SER PHE LEU LEU GLY TYR LEU SEQRES 27 B 480 VAL ASN ASP THR THR PHE PRO GLY PRO GLU GLY THR VAL SEQRES 28 B 480 LEU LEU HIS PHE ASN VAL THR VAL LEU PRO VAL PRO ILE SEQRES 29 B 480 ARG PHE SER GLN VAL THR TYR SER PHE THR VAL SER GLN SEQRES 30 B 480 LYS ALA THR THR TYR SER GLN ILE GLY LYS VAL CYS VAL SEQRES 31 B 480 GLU ASN CYS GLN LYS PHE LYS GLY ILE ASP VAL THR TYR SEQRES 32 B 480 GLN LEU GLU ILE VAL ASP ARG GLN ILE THR ALA GLU ALA SEQRES 33 B 480 GLN SER CYS TYR TRP ALA VAL SER LEU ALA GLN ASN PRO SEQRES 34 B 480 ASN ASP ASN THR GLY VAL LEU TYR VAL ASN ASP THR LYS SEQRES 35 B 480 VAL LEU ARG ARG PRO GLU CYS GLN GLU LEU GLU TYR VAL SEQRES 36 B 480 VAL ILE ALA GLN GLU GLN GLN ASN LYS LEU GLN ALA LYS SEQRES 37 B 480 THR GLN LEU THR VAL SER PHE GLN GLY GLU ALA ASP HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET MAN C 5 11 HET MAN C 6 11 HET FUC C 7 10 HET NAG D 1 14 HET NAG D 2 14 HET NAG E 1 14 HET NAG E 2 14 HET NAG F 1 14 HET NAG F 2 14 HET FUC F 3 10 HET NAG G 1 14 HET NAG G 2 14 HET FUC G 3 10 HET NAG H 1 14 HET NAG H 2 14 HET BMA H 3 11 HET MAN H 4 11 HET FUC H 5 10 HET NAG I 1 14 HET NAG I 2 14 HET NAG J 1 14 HET NAG J 2 14 HET BMA J 3 11 HET FUC J 4 10 HET NAG K 1 14 HET NAG K 2 14 HET BMA K 3 11 HET MAN K 4 11 HET FUC K 5 10 HET CA A 601 1 HET CA A 602 1 HET CA A 603 1 HET NAG A 604 14 HET NAG A 605 14 HET GOL A 606 6 HET GOL A 607 6 HET PGE A 608 4 HET PEG A 609 7 HET PGE A 610 10 HET PEG A 611 7 HET PEG A 612 7 HET PEG A 613 7 HET PGE A 614 10 HET PEG A 615 7 HET PEG A 616 7 HET CA B 601 1 HET CA B 602 1 HET CA B 603 1 HET NAG B 604 14 HET GOL B 605 6 HET GOL B 606 6 HET PEG B 607 7 HET PEG B 608 7 HET PGE B 609 10 HET PGE B 610 10 HET PEG B 611 7 HET PEG B 612 7 HET MES B 613 25 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM CA CALCIUM ION HETNAM GOL GLYCEROL HETNAM PGE TRIETHYLENE GLYCOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NAG 21(C8 H15 N O6) FORMUL 3 BMA 4(C6 H12 O6) FORMUL 3 MAN 5(C6 H12 O6) FORMUL 3 FUC 6(C6 H12 O5) FORMUL 12 CA 6(CA 2+) FORMUL 17 GOL 4(C3 H8 O3) FORMUL 19 PGE 5(C6 H14 O4) FORMUL 20 PEG 10(C4 H10 O3) FORMUL 40 MES C6 H13 N O4 S FORMUL 41 HOH *219(H2 O) HELIX 1 AA1 ALA A 68 SER A 71 5 4 HELIX 2 AA2 GLU A 89 SER A 95 1 7 HELIX 3 AA3 VAL A 121 LEU A 126 1 6 HELIX 4 AA4 SER A 142 VAL A 146 5 5 HELIX 5 AA5 GLU A 147 PHE A 153 1 7 HELIX 6 AA6 ARG A 176 CYS A 183 1 8 HELIX 7 AA7 ASP A 309 ASN A 315 1 7 HELIX 8 AA8 ASN A 414 PHE A 418 5 5 HELIX 9 AA9 THR A 435 SER A 440 1 6 HELIX 10 AB1 CYS A 441 TRP A 443 5 3 HELIX 11 AB2 THR A 463 CYS A 471 5 9 HELIX 12 AB3 ASP B 67 SER B 71 5 5 HELIX 13 AB4 GLU B 89 SER B 95 1 7 HELIX 14 AB5 VAL B 121 LEU B 126 1 6 HELIX 15 AB6 SER B 142 VAL B 146 5 5 HELIX 16 AB7 GLU B 147 PHE B 153 1 7 HELIX 17 AB8 ARG B 176 CYS B 183 5 8 HELIX 18 AB9 ASP B 309 ASN B 315 1 7 HELIX 19 AC1 ASN B 414 PHE B 418 5 5 HELIX 20 AC2 THR B 435 SER B 440 1 6 HELIX 21 AC3 CYS B 441 TRP B 443 5 3 HELIX 22 AC4 THR B 463 CYS B 471 5 9 SHEET 1 AA1 4 LEU A 29 VAL A 36 0 SHEET 2 AA1 4 THR A 128 THR A 139 1 O LYS A 132 N TYR A 30 SHEET 3 AA1 4 LYS A 105 SER A 114 -1 N LEU A 107 O LEU A 133 SHEET 4 AA1 4 TYR A 59 LEU A 62 -1 N PHE A 61 O GLY A 112 SHEET 1 AA2 3 PRO A 43 GLN A 46 0 SHEET 2 AA2 3 VAL A 81 LEU A 84 -1 O LEU A 82 N LEU A 45 SHEET 3 AA2 3 PHE A 73 ILE A 75 -1 N HIS A 74 O TYR A 83 SHEET 1 AA3 4 HIS A 161 THR A 163 0 SHEET 2 AA3 4 LEU A 237 TYR A 249 1 O TYR A 249 N ILE A 162 SHEET 3 AA3 4 VAL A 222 ARG A 232 -1 N LEU A 225 O LEU A 244 SHEET 4 AA3 4 THR A 187 VAL A 192 -1 N SER A 189 O MET A 230 SHEET 1 AA4 3 GLY A 169 GLN A 173 0 SHEET 2 AA4 3 GLU A 208 VAL A 211 -1 O LEU A 209 N LEU A 171 SHEET 3 AA4 3 PHE A 200 ASP A 203 -1 N ALA A 201 O VAL A 210 SHEET 1 AA5 4 TYR A 257 VAL A 258 0 SHEET 2 AA5 4 VAL A 277 ASP A 285 -1 O TYR A 284 N TYR A 257 SHEET 3 AA5 4 GLY A 334 LEU A 343 -1 O HIS A 337 N VAL A 283 SHEET 4 AA5 4 PHE A 316 GLU A 325 -1 N ALA A 317 O LYS A 342 SHEET 1 AA6 4 THR A 263 VAL A 268 0 SHEET 2 AA6 4 THR A 372 VAL A 381 1 O THR A 380 N VAL A 266 SHEET 3 AA6 4 ARG A 353 ASP A 363 -1 N VAL A 361 O VAL A 373 SHEET 4 AA6 4 LEU A 301 LEU A 305 -1 N VAL A 302 O ASN A 362 SHEET 1 AA7 4 TYR A 393 VAL A 397 0 SHEET 2 AA7 4 GLN A 488 PHE A 497 1 O SER A 496 N VAL A 397 SHEET 3 AA7 4 GLU A 473 GLU A 482 -1 N TYR A 476 O LEU A 493 SHEET 4 AA7 4 VAL A 423 ILE A 429 -1 N GLN A 426 O ILE A 479 SHEET 1 AA8 3 GLN A 406 VAL A 410 0 SHEET 2 AA8 3 GLY A 456 VAL A 460 -1 O LEU A 458 N ILE A 407 SHEET 3 AA8 3 VAL A 445 GLN A 449 -1 N SER A 446 O TYR A 459 SHEET 1 AA9 4 LEU B 29 VAL B 36 0 SHEET 2 AA9 4 THR B 128 THR B 139 1 O LYS B 132 N TYR B 30 SHEET 3 AA9 4 LYS B 105 SER B 114 -1 N LEU B 107 O LEU B 133 SHEET 4 AA9 4 TYR B 59 LEU B 62 -1 N PHE B 61 O GLY B 112 SHEET 1 AB1 3 PRO B 43 GLN B 46 0 SHEET 2 AB1 3 VAL B 81 LEU B 84 -1 O LEU B 82 N LEU B 44 SHEET 3 AB1 3 PHE B 73 ILE B 75 -1 N HIS B 74 O TYR B 83 SHEET 1 AB2 4 HIS B 161 THR B 163 0 SHEET 2 AB2 4 LEU B 237 TYR B 249 1 O TYR B 249 N ILE B 162 SHEET 3 AB2 4 VAL B 222 ARG B 232 -1 N VAL B 231 O GLU B 238 SHEET 4 AB2 4 THR B 187 VAL B 193 -1 N GLY B 191 O VAL B 228 SHEET 1 AB3 3 GLY B 169 GLN B 173 0 SHEET 2 AB3 3 GLU B 208 VAL B 211 -1 O LEU B 209 N LEU B 171 SHEET 3 AB3 3 PHE B 200 ASP B 203 -1 N ALA B 201 O VAL B 210 SHEET 1 AB4 4 TYR B 257 VAL B 258 0 SHEET 2 AB4 4 LEU B 281 ASP B 285 -1 O TYR B 284 N TYR B 257 SHEET 3 AB4 4 GLY B 334 LEU B 343 -1 O THR B 335 N ASP B 285 SHEET 4 AB4 4 PHE B 316 GLU B 325 -1 N GLU B 319 O LYS B 340 SHEET 1 AB5 4 THR B 263 VAL B 268 0 SHEET 2 AB5 4 THR B 372 VAL B 381 1 O THR B 380 N VAL B 266 SHEET 3 AB5 4 ARG B 353 ASP B 363 -1 N TYR B 359 O LEU B 375 SHEET 4 AB5 4 LEU B 301 MET B 306 -1 N MET B 306 O GLY B 358 SHEET 1 AB6 4 THR B 392 SER B 398 0 SHEET 2 AB6 4 GLN B 488 GLN B 498 1 O SER B 496 N VAL B 397 SHEET 3 AB6 4 GLU B 473 GLU B 482 -1 N TYR B 476 O LEU B 493 SHEET 4 AB6 4 VAL B 423 ILE B 429 -1 N GLU B 428 O VAL B 477 SHEET 1 AB7 3 GLN B 406 VAL B 410 0 SHEET 2 AB7 3 THR B 455 VAL B 460 -1 O LEU B 458 N ILE B 407 SHEET 3 AB7 3 VAL B 445 ASN B 450 -1 N ALA B 448 O VAL B 457 SSBOND 1 CYS A 63 CYS A 123 1555 1555 2.07 SSBOND 2 CYS A 143 CYS A 183 1555 1555 2.08 SSBOND 3 CYS A 152 CYS A 229 1555 1555 2.06 SSBOND 4 CYS A 411 CYS A 415 1555 1555 2.05 SSBOND 5 CYS A 441 CYS A 471 1555 1555 2.04 SSBOND 6 CYS B 143 CYS B 183 1555 1555 2.04 SSBOND 7 CYS B 152 CYS B 229 1555 1555 2.03 SSBOND 8 CYS B 411 CYS B 415 1555 1555 2.06 SSBOND 9 CYS B 441 CYS B 471 1555 1555 2.04 LINK ND2 ASN A 85 C1 NAG A 604 1555 1555 1.45 LINK ND2 ASN A 137 C1 NAG C 1 1555 1555 1.43 LINK ND2 ASN A 185 C1 NAG A 605 1555 1555 1.44 LINK ND2 ASN A 346 C1 NAG D 1 1555 1555 1.44 LINK ND2 ASN A 362 C1 NAG E 1 1555 1555 1.43 LINK ND2 ASN A 378 C1 NAG F 1 1555 1555 1.45 LINK ND2 ASN A 461 C1 NAG G 1 1555 1555 1.44 LINK ND2 ASN B 137 C1 NAG H 1 1555 1555 1.43 LINK ND2 ASN B 185 C1 NAG B 604 1555 1555 1.45 LINK ND2 ASN B 362 C1 NAG I 1 1555 1555 1.44 LINK ND2 ASN B 378 C1 NAG J 1 1555 1555 1.45 LINK ND2 ASN B 461 C1 NAG K 1 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.43 LINK O6 NAG C 1 C1 FUC C 7 1555 1555 1.44 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.45 LINK O3 BMA C 3 C1 MAN C 4 1555 1555 1.46 LINK O6 BMA C 3 C1 MAN C 6 1555 1555 1.45 LINK O6 MAN C 4 C1 MAN C 5 1555 1555 1.45 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.45 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.44 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.44 LINK O6 NAG F 1 C1 FUC F 3 1555 1555 1.44 LINK O4 NAG G 1 C1 NAG G 2 1555 1555 1.43 LINK O6 NAG G 1 C1 FUC G 3 1555 1555 1.44 LINK O4 NAG H 1 C1 NAG H 2 1555 1555 1.44 LINK O6 NAG H 1 C1 FUC H 5 1555 1555 1.46 LINK O4 NAG H 2 C1 BMA H 3 1555 1555 1.44 LINK O6 BMA H 3 C1 MAN H 4 1555 1555 1.44 LINK O4 NAG I 1 C1 NAG I 2 1555 1555 1.45 LINK O4 NAG J 1 C1 NAG J 2 1555 1555 1.45 LINK O6 NAG J 1 C1 FUC J 4 1555 1555 1.44 LINK O4 NAG J 2 C1 BMA J 3 1555 1555 1.46 LINK O4 NAG K 1 C1 NAG K 2 1555 1555 1.45 LINK O6 NAG K 1 C1 FUC K 5 1555 1555 1.46 LINK O4 NAG K 2 C1 BMA K 3 1555 1555 1.45 LINK O3 BMA K 3 C1 MAN K 4 1555 1555 1.44 LINK OE1 GLU A 164 CA CA A 601 1555 1555 2.27 LINK OE2 GLU A 164 CA CA A 602 1555 1555 2.38 LINK OD1 ASP A 216 CA CA A 601 1555 1555 2.28 LINK OE1 GLU A 218 CA CA A 601 1555 1555 2.29 LINK OE1 GLU A 218 CA CA A 602 1555 1555 2.91 LINK OE2 GLU A 218 CA CA A 602 1555 1555 2.57 LINK OD1 ASP A 250 CA CA A 602 1555 1555 2.44 LINK O GLU A 251 CA CA A 602 1555 1555 2.41 LINK OD1 ASP A 252 CA CA A 603 1555 1555 2.33 LINK OD2 ASP A 253 CA CA A 601 1555 1555 2.26 LINK OD1 ASP A 253 CA CA A 602 1555 1555 2.46 LINK O ASN A 254 CA CA A 603 1555 1555 2.26 LINK OD1 ASP A 285 CA CA A 603 1555 1555 2.56 LINK OD2 ASP A 285 CA CA A 603 1555 1555 2.42 LINK OD1 ASP A 287 CA CA A 602 1555 1555 2.38 LINK OD2 ASP A 287 CA CA A 603 1555 1555 2.39 LINK OD1 ASN A 299 CA CA A 603 1555 1555 2.27 LINK OD2 ASP A 363 CA CA A 603 1555 1555 2.53 LINK CA CA A 601 O HOH A 708 1555 1555 2.33 LINK CA CA A 601 O HOH A 782 1555 1555 2.34 LINK OE2 GLU B 164 CA CA B 602 1555 1555 2.48 LINK OE1 GLU B 164 CA CA B 603 1555 1555 2.28 LINK OD1 ASP B 216 CA CA B 603 1555 1555 2.39 LINK OE1 GLU B 218 CA CA B 602 1555 1555 2.66 LINK OE2 GLU B 218 CA CA B 602 1555 1555 2.41 LINK OE1 GLU B 218 CA CA B 603 1555 1555 2.42 LINK OD1 ASP B 250 CA CA B 602 1555 1555 2.41 LINK O GLU B 251 CA CA B 602 1555 1555 2.33 LINK OD1 ASP B 252 CA CA B 601 1555 1555 2.47 LINK OD1 ASP B 253 CA CA B 602 1555 1555 2.59 LINK OD1 ASP B 253 CA CA B 603 1555 1555 3.12 LINK OD2 ASP B 253 CA CA B 603 1555 1555 2.37 LINK O ASN B 254 CA CA B 601 1555 1555 2.32 LINK OD1 ASP B 285 CA CA B 601 1555 1555 2.61 LINK OD2 ASP B 285 CA CA B 601 1555 1555 2.49 LINK OD2 ASP B 287 CA CA B 601 1555 1555 2.55 LINK OD1 ASP B 287 CA CA B 602 1555 1555 2.35 LINK OD1 ASN B 299 CA CA B 601 1555 1555 2.35 LINK OD2 ASP B 363 CA CA B 601 1555 1555 2.46 LINK CA CA B 603 O HOH B 720 1555 1555 2.37 LINK CA CA B 603 O HOH B 776 1555 1555 2.41 CISPEP 1 SER A 103 PRO A 104 0 4.80 CISPEP 2 TYR A 292 PRO A 293 0 -4.76 CISPEP 3 SER B 103 PRO B 104 0 6.16 CRYST1 51.167 70.499 105.438 105.41 100.93 100.25 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019544 0.003535 0.005124 0.00000 SCALE2 0.000000 0.014415 0.004699 0.00000 SCALE3 0.000000 0.000000 0.010160 0.00000 MTRIX1 1 0.430794 -0.900334 -0.061774 10.44881 1 MTRIX2 1 -0.902266 -0.431079 -0.009318 11.91009 1 MTRIX3 1 -0.018240 0.059751 -0.998047 98.39783 1