HEADER IMMUNE SYSTEM 09-OCT-20 7AMP TITLE CRYSTAL STRUCTURE OF THE COMPLEX OF HUJOVI-1 FAB WITH THE HUMAN A6 T- TITLE 2 CELL RECEPTOR TRBC1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA CHAIN OF A6 T-CELL RECEPTOR; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: BETA CHAIN 1 OF A6 T-CELL RECEPTOR TRBC1; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: HUJOVI-1 FAB HEAVY CHAIN; COMPND 11 CHAIN: H; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 4; COMPND 14 MOLECULE: HUJOVI-1 FAB LIGHT CHAIN; COMPND 15 CHAIN: L; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_COMMON: HUMAN; SOURCE 16 ORGANISM_TAXID: 9606; SOURCE 17 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 18 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 20 EXPRESSION_SYSTEM_CELL_LINE: CHO; SOURCE 21 MOL_ID: 4; SOURCE 22 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 23 ORGANISM_COMMON: HUMAN; SOURCE 24 ORGANISM_TAXID: 9606; SOURCE 25 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 26 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 27 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 28 EXPRESSION_SYSTEM_CELL_LINE: CHO KEYWDS HUJOVI-1, MONOCLONAL ANTIBODY, THERAPEUTIC ANTIBODY, HUMAN T-CELL KEYWDS 2 RECEPTOR, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR M.FERRARI,A.BULEK,R.BUGHDA,R.JHA,M.WELIN,D.T.LOGAN,A.SEWELL,S.ONUOHA, AUTHOR 2 M.PULE REVDAT 3 31-JAN-24 7AMP 1 REMARK REVDAT 2 27-APR-22 7AMP 1 JRNL REVDAT 1 20-APR-22 7AMP 0 JRNL AUTH M.FERRARI,V.BALDAN,P.WAWRZYNIECKA,A.BULEK,A.KINNA,B.MA, JRNL AUTH 2 R.BUGDA,Z.AKBAR,S.SRIVASTAVA,P.GHONGANE,I.GANNON,M.ROBSON, JRNL AUTH 3 J.SILLIBOURNE,R.JHA,W.LIM,J.HOPKINS,M.WELIN,S.SURADE, JRNL AUTH 4 M.DYSON,J.MCCAFFERTY,S.CORDOBA,S.THOMAS,D.LOGAN,A.SEWELL, JRNL AUTH 5 P.MACIOCIA,S.ONUOHA,M.PULE JRNL TITL STRUCTURE-GUIDED ENGINEERING OF IMMUNOTHERAPIES TARGETING JRNL TITL 2 TRBC1 AND TRBC2 IN T CELL MALIGNANCIES JRNL REF RES SQ 2022 JRNL REFN ESSN 2693-5015 JRNL DOI 10.21203/RS.3.RS-1475171/V1 REMARK 2 REMARK 2 RESOLUTION. 2.64 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.64 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.44 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 36928 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.239 REMARK 3 R VALUE (WORKING SET) : 0.237 REMARK 3 FREE R VALUE : 0.289 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1877 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.64 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.71 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2720 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.89 REMARK 3 BIN R VALUE (WORKING SET) : 0.4740 REMARK 3 BIN FREE R VALUE SET COUNT : 132 REMARK 3 BIN FREE R VALUE : 0.4690 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6828 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 20 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 82.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 12.37000 REMARK 3 B22 (A**2) : -3.80000 REMARK 3 B33 (A**2) : -8.52000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.27000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.540 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.334 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.458 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 26.630 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7011 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6165 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9532 ; 1.161 ; 1.942 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14386 ; 0.871 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 875 ; 6.325 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 316 ;35.075 ;24.177 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1107 ;15.679 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 39 ;16.537 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1037 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7848 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1443 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7AMP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-OCT-20. REMARK 100 THE DEPOSITION ID IS D_1292111610. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9282 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38805 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.640 REMARK 200 RESOLUTION RANGE LOW (A) : 54.440 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.11800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.64 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 1.66900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.930 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4C56, 5MEN, 3D85, 1A4J REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 11.2 MG/ML COMPLEX IN PBS BUFFER. 0.1 REMARK 280 M SODIUM CACODYLATE PH 6.0, 3% PEG 8000, 5 MM ZN ACETATE, 4% REMARK 280 BENZAMIDINE., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 58.69500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.52500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 58.69500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 45.52500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -131.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLN A 2 REMARK 465 LYS A 3 REMARK 465 GLU A 204 REMARK 465 SER A 205 REMARK 465 SER A 206 REMARK 465 MET B 0 REMARK 465 ASN B 1 REMARK 465 ALA B 2 REMARK 465 THR H 142 REMARK 465 SER H 143 REMARK 465 GLY H 144 REMARK 465 GLY H 145 REMARK 465 THR H 146 REMARK 465 GLU L 218 REMARK 465 CYS L 219 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 32 -55.94 -126.98 REMARK 500 ALA A 86 -173.74 -171.64 REMARK 500 ASN A 116 68.02 -119.67 REMARK 500 ASP A 118 65.88 -156.85 REMARK 500 PHE A 183 113.93 -173.47 REMARK 500 ASP A 197 -34.66 -32.68 REMARK 500 ASN B 28 54.25 -96.26 REMARK 500 ILE B 46 -65.87 -90.50 REMARK 500 SER B 69 -80.00 -76.61 REMARK 500 PHE B 74 77.00 -163.06 REMARK 500 LEU B 79 -71.79 -72.38 REMARK 500 ARG B 101 82.79 55.77 REMARK 500 PRO B 102 31.64 -95.52 REMARK 500 ALA B 244 31.96 -91.08 REMARK 500 ASN H 103 70.83 53.57 REMARK 500 ASP H 155 64.57 61.09 REMARK 500 SER H 199 31.26 -76.10 REMARK 500 SER L 7 -74.99 -76.56 REMARK 500 ASN L 33 1.07 -67.27 REMARK 500 LEU L 52 -60.18 -103.46 REMARK 500 VAL L 56 -64.43 70.61 REMARK 500 LYS L 112 39.16 -91.60 REMARK 500 VAL L 115 107.96 37.54 REMARK 500 ASN L 143 75.10 54.83 REMARK 500 LYS L 174 -69.38 -97.19 REMARK 500 LYS L 195 -47.89 -135.08 REMARK 500 PRO L 209 99.64 -48.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN H 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 118 OD1 REMARK 620 2 HIS B 138 NE2 97.1 REMARK 620 3 GLU H 62 OE1 85.3 76.6 REMARK 620 4 GLU H 62 OE2 86.6 76.6 1.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN L 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP L 65 OD2 REMARK 620 2 ASP L 190 OD1 54.1 REMARK 620 3 HIS L 194 NE2 56.8 3.1 REMARK 620 N 1 2 DBREF 7AMP A 1 206 PDB 7AMP 7AMP 1 206 DBREF 7AMP B 0 245 PDB 7AMP 7AMP 0 245 DBREF 7AMP H 1 225 PDB 7AMP 7AMP 1 225 DBREF 7AMP L 1 219 PDB 7AMP 7AMP 1 219 SEQRES 1 A 206 MET GLN LYS GLU VAL GLU GLN ASN SER GLY PRO LEU SER SEQRES 2 A 206 VAL PRO GLU GLY ALA ILE ALA SER LEU ASN CYS THR TYR SEQRES 3 A 206 SER ASP ARG GLY SER GLN SER PHE PHE TRP TYR ARG GLN SEQRES 4 A 206 TYR SER GLY LYS SER PRO GLU LEU ILE MET SER ILE TYR SEQRES 5 A 206 SER ASN GLY ASP LYS GLU ASP GLY ARG PHE THR ALA GLN SEQRES 6 A 206 LEU ASN LYS ALA SER GLN TYR VAL SER LEU LEU ILE ARG SEQRES 7 A 206 ASP SER GLN PRO SER ASP SER ALA THR TYR LEU CYS ALA SEQRES 8 A 206 VAL THR THR ASP SER TRP GLY LYS LEU GLN PHE GLY ALA SEQRES 9 A 206 GLY THR GLN VAL VAL VAL THR PRO ASP ILE GLN ASN PRO SEQRES 10 A 206 ASP PRO ALA VAL TYR GLN LEU ARG ASP SER LYS SER SER SEQRES 11 A 206 ASP LYS SER VAL CYS LEU PHE THR ASP PHE ASP SER GLN SEQRES 12 A 206 THR ASN VAL SER GLN SER LYS ASP SER ASP VAL TYR ILE SEQRES 13 A 206 THR ASP LYS CYS VAL LEU ASP MET ARG SER MET ASP PHE SEQRES 14 A 206 LYS SER ASN SER ALA VAL ALA TRP SER ASN LYS SER ASP SEQRES 15 A 206 PHE ALA CYS ALA ASN ALA PHE ASN ASN SER ILE ILE PRO SEQRES 16 A 206 GLU ASP THR PHE PHE PRO SER PRO GLU SER SER SEQRES 1 B 246 MET ASN ALA GLY VAL THR GLN THR PRO LYS PHE GLN VAL SEQRES 2 B 246 LEU LYS THR GLY GLN SER MET THR LEU GLN CYS ALA GLN SEQRES 3 B 246 ASP MET ASN HIS GLU TYR MET SER TRP TYR ARG GLN ASP SEQRES 4 B 246 PRO GLY MET GLY LEU ARG LEU ILE HIS TYR SER VAL GLY SEQRES 5 B 246 ALA GLY ILE THR ASP GLN GLY GLU VAL PRO ASN GLY TYR SEQRES 6 B 246 ASN VAL SER ARG SER THR THR GLU ASP PHE PRO LEU ARG SEQRES 7 B 246 LEU LEU SER ALA ALA PRO SER GLN THR SER VAL TYR PHE SEQRES 8 B 246 CYS ALA SER ARG PRO GLY LEU ALA GLY GLY ARG PRO GLU SEQRES 9 B 246 GLN TYR PHE GLY PRO GLY THR ARG LEU THR VAL THR GLU SEQRES 10 B 246 ASP LEU ASN LYS VAL PHE PRO PRO GLU VAL ALA VAL PHE SEQRES 11 B 246 GLU PRO SER GLU ALA GLU ILE SER HIS THR GLN LYS ALA SEQRES 12 B 246 THR LEU VAL CYS LEU ALA THR GLY PHE TYR PRO ASP HIS SEQRES 13 B 246 VAL GLU LEU SER TRP TRP VAL ASN GLY LYS GLU VAL HIS SEQRES 14 B 246 SER GLY VAL CYS THR ASP PRO GLN PRO LEU LYS GLU GLN SEQRES 15 B 246 PRO ALA LEU ASN ASP SER ARG TYR ALA LEU SER SER ARG SEQRES 16 B 246 LEU ARG VAL SER ALA THR PHE TRP GLN ASP PRO ARG ASN SEQRES 17 B 246 HIS PHE ARG CYS GLN VAL GLN PHE TYR GLY LEU SER GLU SEQRES 18 B 246 ASN ASP GLU TRP THR GLN ASP ARG ALA LYS PRO VAL THR SEQRES 19 B 246 GLN ILE VAL SER ALA GLU ALA TRP GLY ARG ALA ASP SEQRES 1 H 225 GLN VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 H 225 PRO GLY ALA SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 H 225 TYR THR PHE THR GLY TYR VAL MET HIS TRP VAL ARG GLN SEQRES 4 H 225 ALA PRO GLY GLN GLY LEU GLU TRP MET GLY PHE ILE ASN SEQRES 5 H 225 PRO TYR ASN ASP ASP ILE GLN SER ASN GLU ARG PHE ARG SEQRES 6 H 225 GLY ARG VAL THR MET THR ARG ASP THR SER ILE SER THR SEQRES 7 H 225 ALA TYR MET GLU LEU SER ARG LEU ARG SER ASP ASP THR SEQRES 8 H 225 ALA VAL TYR TYR CYS ALA ARG GLY ALA GLY TYR ASN PHE SEQRES 9 H 225 ASP GLY ALA TYR ARG PHE PHE ASP PHE TRP GLY GLN GLY SEQRES 10 H 225 THR MET VAL THR VAL SER SER ALA SER THR LYS GLY PRO SEQRES 11 H 225 SER VAL PHE PRO LEU ALA PRO SER SER LYS SER THR SER SEQRES 12 H 225 GLY GLY THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR SEQRES 13 H 225 PHE PRO GLU PRO VAL THR VAL SER TRP ASN SER GLY ALA SEQRES 14 H 225 LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SEQRES 15 H 225 SER SER GLY LEU TYR SER LEU SER SER VAL VAL THR VAL SEQRES 16 H 225 PRO SER SER SER LEU GLY THR GLN THR TYR ILE CYS ASN SEQRES 17 H 225 VAL ASN HIS LYS PRO SER ASN THR LYS VAL ASP LYS LYS SEQRES 18 H 225 VAL GLU PRO LYS SEQRES 1 L 219 ASP ILE VAL MET THR GLN SER PRO LEU SER LEU PRO VAL SEQRES 2 L 219 THR PRO GLY GLU PRO ALA SER ILE SER CYS ARG SER SER SEQRES 3 L 219 GLN ARG LEU VAL HIS SER ASN GLY ASN THR TYR LEU HIS SEQRES 4 L 219 TRP TYR LEU GLN LYS PRO GLY GLN SER PRO ARG LEU LEU SEQRES 5 L 219 ILE TYR ARG VAL SER ASN ARG PHE PRO GLY VAL PRO ASP SEQRES 6 L 219 ARG PHE SER GLY SER GLY SER GLY THR ASP PHE THR LEU SEQRES 7 L 219 LYS ILE SER ARG VAL GLU ALA GLU ASP VAL GLY VAL TYR SEQRES 8 L 219 TYR CYS SER GLN SER THR HIS VAL PRO TYR THR PHE GLY SEQRES 9 L 219 GLN GLY THR LYS LEU GLU ILE LYS ARG THR VAL ALA ALA SEQRES 10 L 219 PRO SER VAL PHE ILE PHE PRO PRO SER ASP GLU GLN LEU SEQRES 11 L 219 LYS SER GLY THR ALA SER VAL VAL CYS LEU LEU ASN ASN SEQRES 12 L 219 PHE TYR PRO ARG GLU ALA LYS VAL GLN TRP LYS VAL ASP SEQRES 13 L 219 ASN ALA LEU GLN SER GLY ASN SER GLN GLU SER VAL THR SEQRES 14 L 219 GLU GLN ASP SER LYS ASP SER THR TYR SER LEU SER SER SEQRES 15 L 219 THR LEU THR LEU SER LYS ALA ASP TYR GLU LYS HIS LYS SEQRES 16 L 219 VAL TYR ALA CYS GLU VAL THR HIS GLN GLY LEU SER SER SEQRES 17 L 219 PRO VAL THR LYS SER PHE ASN ARG GLY GLU CYS HET CL A 400 1 HET ZN H 301 1 HET GOL H 302 6 HET ZN L 300 1 HET ZN L 301 1 HETNAM CL CHLORIDE ION HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 CL CL 1- FORMUL 6 ZN 3(ZN 2+) FORMUL 7 GOL C3 H8 O3 FORMUL 10 HOH *20(H2 O) HELIX 1 AA1 GLN A 81 SER A 85 5 5 HELIX 2 AA2 ALA B 82 THR B 86 5 5 HELIX 3 AA3 ASP B 117 VAL B 121 5 5 HELIX 4 AA4 SER B 132 GLN B 140 1 9 HELIX 5 AA5 ALA B 199 GLN B 203 1 5 HELIX 6 AA6 THR H 28 TYR H 32 5 5 HELIX 7 AA7 GLU H 62 ARG H 65 5 4 HELIX 8 AA8 ARG H 87 THR H 91 5 5 HELIX 9 AA9 ASP H 105 ARG H 109 5 5 HELIX 10 AB1 GLU L 84 VAL L 88 5 5 HELIX 11 AB2 GLN L 129 SER L 132 5 4 HELIX 12 AB3 LYS L 188 LYS L 193 1 6 SHEET 1 AA1 5 VAL A 5 GLN A 7 0 SHEET 2 AA1 5 ALA A 20 TYR A 26 -1 O THR A 25 N GLU A 6 SHEET 3 AA1 5 TYR A 72 ILE A 77 -1 O VAL A 73 N CYS A 24 SHEET 4 AA1 5 PHE A 62 ASN A 67 -1 N GLN A 65 O SER A 74 SHEET 5 AA1 5 GLY A 55 ASP A 59 -1 N ASP A 59 O PHE A 62 SHEET 1 AA2 5 PRO A 11 PRO A 15 0 SHEET 2 AA2 5 THR A 106 THR A 111 1 O GLN A 107 N LEU A 12 SHEET 3 AA2 5 ALA A 86 THR A 93 -1 N ALA A 86 O VAL A 108 SHEET 4 AA2 5 SER A 33 GLN A 39 -1 N PHE A 35 O ALA A 91 SHEET 5 AA2 5 GLU A 46 ILE A 51 -1 O GLU A 46 N ARG A 38 SHEET 1 AA3 4 PRO A 11 PRO A 15 0 SHEET 2 AA3 4 THR A 106 THR A 111 1 O GLN A 107 N LEU A 12 SHEET 3 AA3 4 ALA A 86 THR A 93 -1 N ALA A 86 O VAL A 108 SHEET 4 AA3 4 GLN A 101 PHE A 102 -1 O GLN A 101 N VAL A 92 SHEET 1 AA4 8 VAL A 154 ILE A 156 0 SHEET 2 AA4 8 ASN A 172 SER A 178 -1 O TRP A 177 N TYR A 155 SHEET 3 AA4 8 SER A 133 THR A 138 -1 N CYS A 135 O ALA A 176 SHEET 4 AA4 8 ALA A 120 ASP A 126 -1 N TYR A 122 O LEU A 136 SHEET 5 AA4 8 GLU B 125 GLU B 130 -1 O GLU B 130 N ARG A 125 SHEET 6 AA4 8 LYS B 141 PHE B 151 -1 O VAL B 145 N PHE B 129 SHEET 7 AA4 8 TYR B 189 SER B 198 -1 O LEU B 191 N ALA B 148 SHEET 8 AA4 8 VAL B 171 THR B 173 -1 N CYS B 172 O ARG B 194 SHEET 1 AA5 8 CYS A 160 VAL A 161 0 SHEET 2 AA5 8 ASN A 172 SER A 178 -1 O SER A 173 N CYS A 160 SHEET 3 AA5 8 SER A 133 THR A 138 -1 N CYS A 135 O ALA A 176 SHEET 4 AA5 8 ALA A 120 ASP A 126 -1 N TYR A 122 O LEU A 136 SHEET 5 AA5 8 GLU B 125 GLU B 130 -1 O GLU B 130 N ARG A 125 SHEET 6 AA5 8 LYS B 141 PHE B 151 -1 O VAL B 145 N PHE B 129 SHEET 7 AA5 8 TYR B 189 SER B 198 -1 O LEU B 191 N ALA B 148 SHEET 8 AA5 8 LEU B 178 LYS B 179 -1 N LEU B 178 O ALA B 190 SHEET 1 AA6 4 VAL B 4 THR B 7 0 SHEET 2 AA6 4 MET B 19 GLN B 25 -1 O ALA B 24 N THR B 5 SHEET 3 AA6 4 LEU B 76 LEU B 78 -1 O LEU B 76 N LEU B 21 SHEET 4 AA6 4 TYR B 64 VAL B 66 -1 N ASN B 65 O ARG B 77 SHEET 1 AA7 6 PHE B 10 LYS B 14 0 SHEET 2 AA7 6 THR B 110 THR B 115 1 O THR B 113 N LEU B 13 SHEET 3 AA7 6 SER B 87 SER B 93 -1 N SER B 87 O LEU B 112 SHEET 4 AA7 6 MET B 32 ASP B 38 -1 N TYR B 35 O PHE B 90 SHEET 5 AA7 6 GLY B 42 SER B 49 -1 O ILE B 46 N TRP B 34 SHEET 6 AA7 6 ASP B 56 GLN B 57 -1 O ASP B 56 N TYR B 48 SHEET 1 AA8 4 PHE B 10 LYS B 14 0 SHEET 2 AA8 4 THR B 110 THR B 115 1 O THR B 113 N LEU B 13 SHEET 3 AA8 4 SER B 87 SER B 93 -1 N SER B 87 O LEU B 112 SHEET 4 AA8 4 TYR B 105 PHE B 106 -1 O TYR B 105 N SER B 93 SHEET 1 AA9 4 LYS B 165 GLU B 166 0 SHEET 2 AA9 4 VAL B 156 VAL B 162 -1 N VAL B 162 O LYS B 165 SHEET 3 AA9 4 HIS B 208 PHE B 215 -1 O GLN B 212 N SER B 159 SHEET 4 AA9 4 GLN B 234 TRP B 241 -1 O GLN B 234 N PHE B 215 SHEET 1 AB1 4 GLN H 3 GLN H 6 0 SHEET 2 AB1 4 SER H 17 SER H 25 -1 O LYS H 23 N VAL H 5 SHEET 3 AB1 4 THR H 78 SER H 84 -1 O MET H 81 N VAL H 20 SHEET 4 AB1 4 VAL H 68 ASP H 73 -1 N ASP H 73 O THR H 78 SHEET 1 AB2 6 GLU H 10 LYS H 12 0 SHEET 2 AB2 6 THR H 118 VAL H 122 1 O THR H 121 N GLU H 10 SHEET 3 AB2 6 ALA H 92 GLY H 99 -1 N ALA H 92 O VAL H 120 SHEET 4 AB2 6 MET H 34 GLN H 39 -1 N VAL H 37 O TYR H 95 SHEET 5 AB2 6 LEU H 45 ILE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 AB2 6 ILE H 58 SER H 60 -1 O GLN H 59 N PHE H 50 SHEET 1 AB3 4 GLU H 10 LYS H 12 0 SHEET 2 AB3 4 THR H 118 VAL H 122 1 O THR H 121 N GLU H 10 SHEET 3 AB3 4 ALA H 92 GLY H 99 -1 N ALA H 92 O VAL H 120 SHEET 4 AB3 4 PHE H 111 TRP H 114 -1 O PHE H 113 N ARG H 98 SHEET 1 AB4 4 SER H 131 LEU H 135 0 SHEET 2 AB4 4 ALA H 148 TYR H 156 -1 O LEU H 152 N PHE H 133 SHEET 3 AB4 4 TYR H 187 THR H 194 -1 O TYR H 187 N TYR H 156 SHEET 4 AB4 4 VAL H 174 THR H 176 -1 N HIS H 175 O VAL H 192 SHEET 1 AB5 4 SER H 131 LEU H 135 0 SHEET 2 AB5 4 ALA H 148 TYR H 156 -1 O LEU H 152 N PHE H 133 SHEET 3 AB5 4 TYR H 187 THR H 194 -1 O TYR H 187 N TYR H 156 SHEET 4 AB5 4 VAL H 180 LEU H 181 -1 N VAL H 180 O SER H 188 SHEET 1 AB6 3 THR H 162 TRP H 165 0 SHEET 2 AB6 3 ILE H 206 HIS H 211 -1 O ASN H 208 N SER H 164 SHEET 3 AB6 3 THR H 216 LYS H 221 -1 O THR H 216 N HIS H 211 SHEET 1 AB7 4 MET L 4 GLN L 6 0 SHEET 2 AB7 4 ALA L 19 SER L 25 -1 O ARG L 24 N THR L 5 SHEET 3 AB7 4 ASP L 75 ILE L 80 -1 O ILE L 80 N ALA L 19 SHEET 4 AB7 4 PHE L 67 SER L 72 -1 N SER L 68 O LYS L 79 SHEET 1 AB8 6 SER L 10 VAL L 13 0 SHEET 2 AB8 6 THR L 107 ILE L 111 1 O LYS L 108 N LEU L 11 SHEET 3 AB8 6 GLY L 89 GLN L 95 -1 N TYR L 91 O THR L 107 SHEET 4 AB8 6 LEU L 38 GLN L 43 -1 N TYR L 41 O TYR L 92 SHEET 5 AB8 6 ARG L 50 TYR L 54 -1 O LEU L 52 N TRP L 40 SHEET 6 AB8 6 ASN L 58 ARG L 59 -1 O ASN L 58 N TYR L 54 SHEET 1 AB9 4 SER L 10 VAL L 13 0 SHEET 2 AB9 4 THR L 107 ILE L 111 1 O LYS L 108 N LEU L 11 SHEET 3 AB9 4 GLY L 89 GLN L 95 -1 N TYR L 91 O THR L 107 SHEET 4 AB9 4 THR L 102 PHE L 103 -1 O THR L 102 N GLN L 95 SHEET 1 AC1 4 PHE L 121 PHE L 123 0 SHEET 2 AC1 4 THR L 134 PHE L 144 -1 O LEU L 140 N PHE L 121 SHEET 3 AC1 4 TYR L 178 SER L 187 -1 O TYR L 178 N PHE L 144 SHEET 4 AC1 4 SER L 164 VAL L 168 -1 N GLN L 165 O THR L 183 SHEET 1 AC2 4 ALA L 158 LEU L 159 0 SHEET 2 AC2 4 LYS L 150 VAL L 155 -1 N VAL L 155 O ALA L 158 SHEET 3 AC2 4 VAL L 196 THR L 202 -1 O ALA L 198 N LYS L 154 SHEET 4 AC2 4 VAL L 210 ASN L 215 -1 O VAL L 210 N VAL L 201 SSBOND 1 CYS A 24 CYS A 90 1555 1555 2.03 SSBOND 2 CYS A 135 CYS A 185 1555 1555 2.05 SSBOND 3 CYS A 160 CYS B 172 1555 1555 2.03 SSBOND 4 CYS B 23 CYS B 91 1555 1555 2.04 SSBOND 5 CYS B 146 CYS B 211 1555 1555 2.03 SSBOND 6 CYS H 22 CYS H 96 1555 1555 2.04 SSBOND 7 CYS H 151 CYS H 207 1555 1555 2.04 SSBOND 8 CYS L 23 CYS L 93 1555 1555 2.05 SSBOND 9 CYS L 139 CYS L 199 1555 1555 2.05 LINK OD1 ASP A 118 ZN ZN H 301 1555 4447 2.03 LINK NE2 HIS B 138 ZN ZN H 301 1555 4447 2.14 LINK OE1 GLU H 62 ZN ZN H 301 1555 1555 2.68 LINK OE2 GLU H 62 ZN ZN H 301 1555 1555 2.45 LINK OD2 ASP L 65 ZN ZN L 301 1555 4446 1.71 LINK OE1 GLN L 160 ZN ZN L 300 1555 1555 2.48 LINK OD1 ASP L 190 ZN ZN L 301 1555 1555 2.11 LINK NE2 HIS L 194 ZN ZN L 301 1555 1555 2.03 CISPEP 1 THR B 7 PRO B 8 0 -5.54 CISPEP 2 TYR B 152 PRO B 153 0 -1.73 CISPEP 3 PHE H 157 PRO H 158 0 0.11 CISPEP 4 GLU H 159 PRO H 160 0 2.18 CISPEP 5 VAL L 99 PRO L 100 0 -3.58 CISPEP 6 TYR L 145 PRO L 146 0 -3.71 CRYST1 117.390 91.050 125.260 90.00 93.82 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008519 0.000000 0.000569 0.00000 SCALE2 0.000000 0.010983 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008001 0.00000