HEADER SUGAR BINDING PROTEIN 10-OCT-20 7AN4 TITLE MLGHB, GDP-MANNOHEPTOSE C3,5 EPIMERASE FROM CAMPYLOBACTER JEJUNI TITLE 2 COMPLEX WITH GDP-MANNOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYMIDINE DIPHOSPHO-4-KETO-RHAMNOSE 3,5-EPIMERASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: DTDP-4-DEHYDRORHAMNOSE 3,5-EPIMERASE,DTDP-4-KETO-6- COMPND 5 DEOXYGLUCOSE 3,DTDP-6-DEOXY-D-XYLO-4-HEXULOSE 3; COMPND 6 EC: 5.1.3.13; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAMPYLOBACTER JEJUNI; SOURCE 3 ORGANISM_TAXID: 197; SOURCE 4 GENE: A0Z41_07375, A4277_09450, B4O43_09685, B7M65_03490, SOURCE 5 BGG25_09075, BM409_09635, BM444_09010, BM513_08715, BSK70_08235, SOURCE 6 BSO22_09160, BZL95_08990, C1418_09190, CLC11_09605, CUT57_09155, SOURCE 7 D6H09_04530, DDO06_09345, DDV78_09325, DMN69_08700, DNA92_09015, SOURCE 8 DUY83_08160, DYU98_09455, E7P31_08690, E7R39_08745, EID41_09365, SOURCE 9 F0020_07730, F0E95_08655, F0F84_08705, F0F98_08535, F0G47_08120, SOURCE 10 F0G48_09050, F0N28_08120, F1N65_08765, F1O83_08575, F6069_09535, SOURCE 11 F7J52_08685, F7N67_09750, F9736_08800, FJ686_08855, FLI41_08630, SOURCE 12 FLR61_08490, FM724_09165, FNQ00_09015, FNW64_09490, FQX08_09165, SOURCE 13 FR479_08460, FVI37_08595, FVM38_08185, FVM79_08160, FVN10_08670, SOURCE 14 FVY82_08610, FVZ89_08655, FW037_08340, FW114_08530, FW212_08130, SOURCE 15 FW254_07800, FW615_08225, FW631_08740, FW892_08160, FW922_08210, SOURCE 16 FWA46_08455, FWB30_08765, FWZ78_00520, FXA21_08555, FXA45_08490, SOURCE 17 FY829_09115, FZJ28_08750, FZV74_08235, GAU91_08625, GAX51_09520, SOURCE 18 GCY42_03565, GI147_08930, GI310_08945, GLM94_08700, GPY87_09225, SOURCE 19 GQ373_08515, GS576_08280, GSX00_06480, GTI33_08365, GTQ72_08215, SOURCE 20 GV351_09030, GWW43_07680, GXS63_001730, GZD67_001691, VQ12_003125; SOURCE 21 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 22 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS EPIMERISE, SUGAR NUCLEOTIDE, CUPIN FOLD, ENZYME, SUGAR BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.H.NAISMITH,L.WOODWARD REVDAT 2 31-JAN-24 7AN4 1 REMARK REVDAT 1 21-OCT-20 7AN4 0 JRNL AUTH J.H.NAISMITH,L.WOODWARD JRNL TITL MGHLB WITH GDP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 23972 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1263 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1613 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.66 REMARK 3 BIN R VALUE (WORKING SET) : 0.2940 REMARK 3 BIN FREE R VALUE SET COUNT : 90 REMARK 3 BIN FREE R VALUE : 0.3430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5858 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 112 REMARK 3 SOLVENT ATOMS : 8 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.80000 REMARK 3 B22 (A**2) : 1.78000 REMARK 3 B33 (A**2) : -0.98000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 5.581 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.311 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.233 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.204 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.917 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.901 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6142 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5684 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8362 ; 1.570 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13116 ; 1.326 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 704 ; 7.071 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 292 ;33.250 ;24.247 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1038 ;12.959 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;19.754 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 892 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6752 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1440 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 6 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 2 176 B 2 176 20804 0.100 0.050 REMARK 3 2 A 1 176 C 1 176 21598 0.080 0.050 REMARK 3 3 A 2 176 D 2 176 21376 0.080 0.050 REMARK 3 4 B 2 176 C 2 176 21120 0.090 0.050 REMARK 3 5 B 2 176 D 2 176 21328 0.080 0.050 REMARK 3 6 C 2 176 D 2 176 21668 0.070 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.70 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7AN4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-OCT-20. REMARK 100 THE DEPOSITION ID IS D_1292111742. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23972 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 56.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.16200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.67 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.66900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1DZR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 31.05 % (W/V) PEG 1500, 0.25 M SODIUM REMARK 280 -POTASSIUM PHOSPHATE, 3.83 % (V/V) 1,4-DIOXANE, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.17500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.02500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 60.94000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 77.02500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.17500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 60.94000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 42.35000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 LYS A 178 REMARK 465 ASN A 179 REMARK 465 LYS A 180 REMARK 465 GLY B -1 REMARK 465 ALA B 0 REMARK 465 MET B 1 REMARK 465 ASN B 179 REMARK 465 LYS B 180 REMARK 465 GLY C -1 REMARK 465 ALA C 0 REMARK 465 LYS C 178 REMARK 465 ASN C 179 REMARK 465 LYS C 180 REMARK 465 GLY D -1 REMARK 465 ALA D 0 REMARK 465 MET D 1 REMARK 465 LYS D 178 REMARK 465 ASN D 179 REMARK 465 LYS D 180 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 N GLU C 9 OD2 ASP C 46 4555 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 64 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 LEU C 27 CB - CG - CD2 ANGL. DEV. = 10.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 51 18.36 -141.33 REMARK 500 LYS B 51 18.01 -142.43 REMARK 500 LYS C 51 18.01 -141.82 REMARK 500 LYS D 51 17.24 -142.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP D 202 DBREF1 7AN4 A 1 180 UNP A0A2U0QM91_CAMJU DBREF2 7AN4 A A0A2U0QM91 1 180 DBREF1 7AN4 B 1 180 UNP A0A2U0QM91_CAMJU DBREF2 7AN4 B A0A2U0QM91 1 180 DBREF1 7AN4 C 1 180 UNP A0A2U0QM91_CAMJU DBREF2 7AN4 C A0A2U0QM91 1 180 DBREF1 7AN4 D 1 180 UNP A0A2U0QM91_CAMJU DBREF2 7AN4 D A0A2U0QM91 1 180 SEQADV 7AN4 GLY A -1 UNP A0A2U0QM9 EXPRESSION TAG SEQADV 7AN4 ALA A 0 UNP A0A2U0QM9 EXPRESSION TAG SEQADV 7AN4 GLY B -1 UNP A0A2U0QM9 EXPRESSION TAG SEQADV 7AN4 ALA B 0 UNP A0A2U0QM9 EXPRESSION TAG SEQADV 7AN4 GLY C -1 UNP A0A2U0QM9 EXPRESSION TAG SEQADV 7AN4 ALA C 0 UNP A0A2U0QM9 EXPRESSION TAG SEQADV 7AN4 GLY D -1 UNP A0A2U0QM9 EXPRESSION TAG SEQADV 7AN4 ALA D 0 UNP A0A2U0QM9 EXPRESSION TAG SEQRES 1 A 182 GLY ALA MET ALA ILE GLU PHE ASP ILE GLN GLU SER LYS SEQRES 2 A 182 ILE LEU LYS GLY VAL TYR ILE ILE THR PRO ASN LYS PHE SEQRES 3 A 182 ARG ASP LEU ARG GLY GLU ILE TRP THR ALA PHE THR ASP SEQRES 4 A 182 GLU TYR LEU SER LYS LEU VAL PRO ASP GLY ILE LYS PHE SEQRES 5 A 182 LYS HIS ASP LYS PHE ILE ASN SER HIS PHE ASN VAL LEU SEQRES 6 A 182 ARG GLY ILE HIS GLY ASP VAL LYS THR TYR LYS LEU VAL SEQRES 7 A 182 THR CYS VAL TYR GLY GLU VAL HIS GLN VAL VAL VAL ASP SEQRES 8 A 182 CYS ARG LYS ASP SER PRO THR TYR LEU LYS TRP GLU LYS SEQRES 9 A 182 PHE ILE ILE SER TYR LYS ASN GLN GLN LEU ILE LEU LEU SEQRES 10 A 182 PRO PRO ASN MET GLY ASN SER HIS TYR VAL SER SER LYS SEQRES 11 A 182 GLU ALA VAL TYR TYR TYR LYS LEU ALA TYR GLU GLY GLU SEQRES 12 A 182 TYR MET ASP ALA PRO ASP GLN PHE THR TYR ALA TRP ASN SEQRES 13 A 182 ASP GLU ARG ILE GLY ILE ASP TRP PRO THR ASN THR PRO SEQRES 14 A 182 ILE LEU SER ASP ARG ASP ILE LEU ALA THR LYS ASN LYS SEQRES 1 B 182 GLY ALA MET ALA ILE GLU PHE ASP ILE GLN GLU SER LYS SEQRES 2 B 182 ILE LEU LYS GLY VAL TYR ILE ILE THR PRO ASN LYS PHE SEQRES 3 B 182 ARG ASP LEU ARG GLY GLU ILE TRP THR ALA PHE THR ASP SEQRES 4 B 182 GLU TYR LEU SER LYS LEU VAL PRO ASP GLY ILE LYS PHE SEQRES 5 B 182 LYS HIS ASP LYS PHE ILE ASN SER HIS PHE ASN VAL LEU SEQRES 6 B 182 ARG GLY ILE HIS GLY ASP VAL LYS THR TYR LYS LEU VAL SEQRES 7 B 182 THR CYS VAL TYR GLY GLU VAL HIS GLN VAL VAL VAL ASP SEQRES 8 B 182 CYS ARG LYS ASP SER PRO THR TYR LEU LYS TRP GLU LYS SEQRES 9 B 182 PHE ILE ILE SER TYR LYS ASN GLN GLN LEU ILE LEU LEU SEQRES 10 B 182 PRO PRO ASN MET GLY ASN SER HIS TYR VAL SER SER LYS SEQRES 11 B 182 GLU ALA VAL TYR TYR TYR LYS LEU ALA TYR GLU GLY GLU SEQRES 12 B 182 TYR MET ASP ALA PRO ASP GLN PHE THR TYR ALA TRP ASN SEQRES 13 B 182 ASP GLU ARG ILE GLY ILE ASP TRP PRO THR ASN THR PRO SEQRES 14 B 182 ILE LEU SER ASP ARG ASP ILE LEU ALA THR LYS ASN LYS SEQRES 1 C 182 GLY ALA MET ALA ILE GLU PHE ASP ILE GLN GLU SER LYS SEQRES 2 C 182 ILE LEU LYS GLY VAL TYR ILE ILE THR PRO ASN LYS PHE SEQRES 3 C 182 ARG ASP LEU ARG GLY GLU ILE TRP THR ALA PHE THR ASP SEQRES 4 C 182 GLU TYR LEU SER LYS LEU VAL PRO ASP GLY ILE LYS PHE SEQRES 5 C 182 LYS HIS ASP LYS PHE ILE ASN SER HIS PHE ASN VAL LEU SEQRES 6 C 182 ARG GLY ILE HIS GLY ASP VAL LYS THR TYR LYS LEU VAL SEQRES 7 C 182 THR CYS VAL TYR GLY GLU VAL HIS GLN VAL VAL VAL ASP SEQRES 8 C 182 CYS ARG LYS ASP SER PRO THR TYR LEU LYS TRP GLU LYS SEQRES 9 C 182 PHE ILE ILE SER TYR LYS ASN GLN GLN LEU ILE LEU LEU SEQRES 10 C 182 PRO PRO ASN MET GLY ASN SER HIS TYR VAL SER SER LYS SEQRES 11 C 182 GLU ALA VAL TYR TYR TYR LYS LEU ALA TYR GLU GLY GLU SEQRES 12 C 182 TYR MET ASP ALA PRO ASP GLN PHE THR TYR ALA TRP ASN SEQRES 13 C 182 ASP GLU ARG ILE GLY ILE ASP TRP PRO THR ASN THR PRO SEQRES 14 C 182 ILE LEU SER ASP ARG ASP ILE LEU ALA THR LYS ASN LYS SEQRES 1 D 182 GLY ALA MET ALA ILE GLU PHE ASP ILE GLN GLU SER LYS SEQRES 2 D 182 ILE LEU LYS GLY VAL TYR ILE ILE THR PRO ASN LYS PHE SEQRES 3 D 182 ARG ASP LEU ARG GLY GLU ILE TRP THR ALA PHE THR ASP SEQRES 4 D 182 GLU TYR LEU SER LYS LEU VAL PRO ASP GLY ILE LYS PHE SEQRES 5 D 182 LYS HIS ASP LYS PHE ILE ASN SER HIS PHE ASN VAL LEU SEQRES 6 D 182 ARG GLY ILE HIS GLY ASP VAL LYS THR TYR LYS LEU VAL SEQRES 7 D 182 THR CYS VAL TYR GLY GLU VAL HIS GLN VAL VAL VAL ASP SEQRES 8 D 182 CYS ARG LYS ASP SER PRO THR TYR LEU LYS TRP GLU LYS SEQRES 9 D 182 PHE ILE ILE SER TYR LYS ASN GLN GLN LEU ILE LEU LEU SEQRES 10 D 182 PRO PRO ASN MET GLY ASN SER HIS TYR VAL SER SER LYS SEQRES 11 D 182 GLU ALA VAL TYR TYR TYR LYS LEU ALA TYR GLU GLY GLU SEQRES 12 D 182 TYR MET ASP ALA PRO ASP GLN PHE THR TYR ALA TRP ASN SEQRES 13 D 182 ASP GLU ARG ILE GLY ILE ASP TRP PRO THR ASN THR PRO SEQRES 14 D 182 ILE LEU SER ASP ARG ASP ILE LEU ALA THR LYS ASN LYS HET GDP A 201 28 HET GDP B 201 28 HET GDP D 201 28 HET GDP D 202 28 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE FORMUL 5 GDP 4(C10 H15 N5 O11 P2) FORMUL 9 HOH *8(H2 O) HELIX 1 AA1 ASP A 37 SER A 41 1 5 HELIX 2 AA2 LYS A 42 VAL A 44 5 3 HELIX 3 AA3 SER A 106 GLN A 110 5 5 HELIX 4 AA4 ASP A 144 GLN A 148 5 5 HELIX 5 AA5 SER A 170 ALA A 176 1 7 HELIX 6 AA6 ASP B 37 SER B 41 1 5 HELIX 7 AA7 LYS B 42 VAL B 44 5 3 HELIX 8 AA8 ASP B 144 GLN B 148 5 5 HELIX 9 AA9 SER B 170 ALA B 176 1 7 HELIX 10 AB1 THR C 36 SER C 41 1 6 HELIX 11 AB2 LYS C 42 VAL C 44 5 3 HELIX 12 AB3 SER C 106 GLN C 110 5 5 HELIX 13 AB4 ASP C 144 GLN C 148 5 5 HELIX 14 AB5 SER C 170 ALA C 176 1 7 HELIX 15 AB6 THR D 36 SER D 41 1 6 HELIX 16 AB7 LYS D 42 VAL D 44 5 3 HELIX 17 AB8 SER D 106 GLN D 110 5 5 HELIX 18 AB9 ASP D 144 GLN D 148 5 5 HELIX 19 AC1 SER D 170 ALA D 176 1 7 SHEET 1 AA1 8 PHE A 5 GLU A 9 0 SHEET 2 AA1 8 TYR A 17 PRO A 21 -1 O ILE A 18 N GLN A 8 SHEET 3 AA1 8 LEU A 112 LEU A 115 -1 O LEU A 112 N ILE A 19 SHEET 4 AA1 8 TYR A 73 TYR A 80 -1 N LYS A 74 O LEU A 115 SHEET 5 AA1 8 GLU A 129 ALA A 137 -1 O ALA A 137 N TYR A 73 SHEET 6 AA1 8 PHE A 50 HIS A 59 -1 N LYS A 54 O TYR A 134 SHEET 7 AA1 8 GLY B 29 THR B 36 -1 O PHE B 35 N ASP A 53 SHEET 8 AA1 8 PHE B 24 ASP B 26 -1 N PHE B 24 O ILE B 31 SHEET 1 AA2 8 PHE A 24 ASP A 26 0 SHEET 2 AA2 8 GLY A 29 THR A 36 -1 O ILE A 31 N PHE A 24 SHEET 3 AA2 8 PHE B 50 HIS B 59 -1 O ASN B 57 N GLU A 30 SHEET 4 AA2 8 GLU B 129 ALA B 137 -1 O TYR B 134 N LYS B 54 SHEET 5 AA2 8 TYR B 73 TYR B 80 -1 N TYR B 73 O ALA B 137 SHEET 6 AA2 8 LEU B 112 LEU B 115 -1 O LEU B 115 N LYS B 74 SHEET 7 AA2 8 TYR B 17 PRO B 21 -1 N ILE B 19 O LEU B 112 SHEET 8 AA2 8 PHE B 5 GLU B 9 -1 N GLN B 8 O ILE B 18 SHEET 1 AA3 5 TRP A 100 ILE A 105 0 SHEET 2 AA3 5 VAL A 83 ASP A 89 -1 N GLN A 85 O PHE A 103 SHEET 3 AA3 5 MET A 119 VAL A 125 -1 O GLY A 120 N VAL A 88 SHEET 4 AA3 5 LEU A 63 GLY A 68 -1 N HIS A 67 O ASN A 121 SHEET 5 AA3 5 PHE A 149 THR A 150 -1 O PHE A 149 N GLY A 68 SHEET 1 AA4 5 TRP B 100 SER B 106 0 SHEET 2 AA4 5 GLU B 82 ASP B 89 -1 N GLN B 85 O PHE B 103 SHEET 3 AA4 5 MET B 119 VAL B 125 -1 O GLY B 120 N VAL B 88 SHEET 4 AA4 5 LEU B 63 GLY B 68 -1 N HIS B 67 O ASN B 121 SHEET 5 AA4 5 PHE B 149 THR B 150 -1 O PHE B 149 N GLY B 68 SHEET 1 AA5 6 PHE C 5 GLU C 9 0 SHEET 2 AA5 6 TYR C 17 PRO C 21 -1 O ILE C 18 N GLN C 8 SHEET 3 AA5 6 LEU C 112 LEU C 115 -1 O LEU C 112 N ILE C 19 SHEET 4 AA5 6 TYR C 73 TYR C 80 -1 N LYS C 74 O LEU C 115 SHEET 5 AA5 6 GLU C 129 ALA C 137 -1 O ALA C 137 N TYR C 73 SHEET 6 AA5 6 PHE C 50 HIS C 59 -1 N LYS C 54 O TYR C 134 SHEET 1 AA6 2 PHE C 24 ASP C 26 0 SHEET 2 AA6 2 GLY C 29 ILE C 31 -1 O ILE C 31 N PHE C 24 SHEET 1 AA7 5 TRP C 100 ILE C 105 0 SHEET 2 AA7 5 VAL C 83 ASP C 89 -1 N GLN C 85 O PHE C 103 SHEET 3 AA7 5 MET C 119 VAL C 125 -1 O GLY C 120 N VAL C 88 SHEET 4 AA7 5 LEU C 63 GLY C 68 -1 N HIS C 67 O ASN C 121 SHEET 5 AA7 5 PHE C 149 THR C 150 -1 O PHE C 149 N GLY C 68 SHEET 1 AA8 6 PHE D 5 GLU D 9 0 SHEET 2 AA8 6 TYR D 17 PRO D 21 -1 O ILE D 18 N GLN D 8 SHEET 3 AA8 6 LEU D 112 LEU D 115 -1 O LEU D 112 N ILE D 19 SHEET 4 AA8 6 TYR D 73 TYR D 80 -1 N LYS D 74 O LEU D 115 SHEET 5 AA8 6 GLU D 129 ALA D 137 -1 O ALA D 137 N TYR D 73 SHEET 6 AA8 6 PHE D 50 HIS D 59 -1 N LYS D 54 O TYR D 134 SHEET 1 AA9 2 PHE D 24 ASP D 26 0 SHEET 2 AA9 2 GLY D 29 ILE D 31 -1 O ILE D 31 N PHE D 24 SHEET 1 AB1 5 TRP D 100 ILE D 105 0 SHEET 2 AB1 5 VAL D 83 ASP D 89 -1 N GLN D 85 O PHE D 103 SHEET 3 AB1 5 MET D 119 VAL D 125 -1 O GLY D 120 N VAL D 88 SHEET 4 AB1 5 LEU D 63 GLY D 68 -1 N HIS D 67 O ASN D 121 SHEET 5 AB1 5 PHE D 149 THR D 150 -1 O PHE D 149 N GLY D 68 CISPEP 1 GLY A 65 ILE A 66 0 1.13 CISPEP 2 GLY B 65 ILE B 66 0 0.28 CISPEP 3 GLY C 65 ILE C 66 0 0.17 CISPEP 4 GLY D 65 ILE D 66 0 0.49 SITE 1 AC1 14 ALA A 0 MET A 1 ASN A 22 LYS A 23 SITE 2 AC1 14 PHE A 24 ARG A 28 ILE A 31 TRP A 32 SITE 3 AC1 14 THR A 33 HOH A 301 LYS B 54 ASP B 144 SITE 4 AC1 14 SER B 170 ARG B 172 SITE 1 AC2 12 LYS A 54 ASP A 144 ALA A 145 ARG A 172 SITE 2 AC2 12 ASN B 22 PHE B 24 ILE B 31 TRP B 32 SITE 3 AC2 12 THR B 33 HOH B 301 ARG D 25 LYS D 108 SITE 1 AC3 11 MET C 1 ASN C 22 PHE C 24 ARG C 28 SITE 2 AC3 11 ILE C 31 TRP C 32 THR C 33 HOH C 202 SITE 3 AC3 11 LYS D 54 ASP D 144 ARG D 172 SITE 1 AC4 11 LYS C 54 ASP C 144 SER C 170 ARG C 172 SITE 2 AC4 11 ASN D 22 PHE D 24 ARG D 28 ILE D 31 SITE 3 AC4 11 TRP D 32 THR D 33 HOH D 302 CRYST1 42.350 121.880 154.050 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023613 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008205 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006491 0.00000