HEADER HYDROLASE 14-OCT-20 7AOM TITLE STRUCTURE OF NUDT15 IN COMPLEX WITH GANCICLOVIR TRIPHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOTIDE TRIPHOSPHATE DIPHOSPHATASE NUDT15; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MUTT HOMOLOG 2,MTH2,NUCLEOSIDE DIPHOSPHATE-LINKED MOIETY X COMPND 5 MOTIF 15,NUDIX MOTIF 15,NUCLEOSIDE DIPHOSPHATE-LINKED TO ANOTHER COMPND 6 MOIETY X HYDROLASE 15,NUDIX HYDROLASE 15; COMPND 7 EC: 3.6.1.9; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NUDT15, MTH2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS NUDIX HYDROLASE, ANTIVIRAL, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR D.REHLING,S.M.ZHANG,T.HELLEDAY,P.STENMARK REVDAT 5 31-JAN-24 7AOM 1 REMARK REVDAT 4 21-DEC-22 7AOM 1 COMPND SOURCE JRNL REVDAT 3 29-DEC-21 7AOM 1 JRNL REVDAT 2 14-JUL-21 7AOM 1 JRNL REVDAT 1 02-JUN-21 7AOM 0 JRNL AUTH S.M.ZHANG,D.REHLING,A.S.JEMTH,A.THROUP,N.LANDAZURI,I.ALMLOF, JRNL AUTH 2 M.GOTTMANN,N.C.K.VALERIE,S.R.BORHADE,P.WAKCHAURE,B.D.G.PAGE, JRNL AUTH 3 M.DESROSES,E.J.HOMAN,M.SCOBIE,S.G.RUDD,U.W.BERGLUND, JRNL AUTH 4 C.SODERBERG-NAUCLER,P.STENMARK,T.HELLEDAY JRNL TITL NUDT15-MEDIATED HYDROLYSIS LIMITS THE EFFICACY OF ANTI-HCMV JRNL TITL 2 DRUG GANCICLOVIR. JRNL REF CELL CHEM BIOL V. 28 1693 2021 JRNL REFN ESSN 2451-9456 JRNL PMID 34192523 JRNL DOI 10.1016/J.CHEMBIOL.2021.06.001 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.50 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 23194 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.210 REMARK 3 FREE R VALUE TEST SET COUNT : 1208 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.5000 - 4.0600 1.00 2614 161 0.1666 0.2053 REMARK 3 2 4.0600 - 3.2200 1.00 2475 134 0.1734 0.1847 REMARK 3 3 3.2200 - 2.8200 1.00 2464 139 0.2191 0.2435 REMARK 3 4 2.8200 - 2.5600 0.99 2439 117 0.2389 0.2035 REMARK 3 5 2.5600 - 2.3700 1.00 2427 126 0.2226 0.2603 REMARK 3 6 2.3700 - 2.2300 1.00 2417 131 0.2343 0.2455 REMARK 3 7 2.2300 - 2.1200 1.00 2416 134 0.2427 0.2559 REMARK 3 8 2.1200 - 2.0300 1.00 2409 139 0.2475 0.2656 REMARK 3 9 2.0300 - 1.9500 0.97 2325 127 0.2674 0.3245 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.221 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.316 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.53 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 2644 REMARK 3 ANGLE : 1.088 3604 REMARK 3 CHIRALITY : 0.098 358 REMARK 3 PLANARITY : 0.006 462 REMARK 3 DIHEDRAL : 15.055 950 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 11:104) REMARK 3 ORIGIN FOR THE GROUP (A): -8.5418 -11.5938 21.2624 REMARK 3 T TENSOR REMARK 3 T11: 0.1926 T22: 0.1489 REMARK 3 T33: 0.1992 T12: 0.0233 REMARK 3 T13: 0.0338 T23: 0.0032 REMARK 3 L TENSOR REMARK 3 L11: 2.5331 L22: 1.4031 REMARK 3 L33: 1.4916 L12: 1.1536 REMARK 3 L13: 0.8972 L23: 0.1286 REMARK 3 S TENSOR REMARK 3 S11: -0.0568 S12: 0.1400 S13: -0.1049 REMARK 3 S21: -0.0980 S22: 0.0869 S23: -0.2526 REMARK 3 S31: -0.2118 S32: 0.2859 S33: -0.0044 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 105:140) REMARK 3 ORIGIN FOR THE GROUP (A): -3.8034 -3.3238 18.7819 REMARK 3 T TENSOR REMARK 3 T11: 0.3822 T22: 0.2541 REMARK 3 T33: 0.2693 T12: -0.0436 REMARK 3 T13: 0.0630 T23: -0.0068 REMARK 3 L TENSOR REMARK 3 L11: 1.2929 L22: 0.5493 REMARK 3 L33: 0.4845 L12: 0.3662 REMARK 3 L13: 0.0969 L23: -0.0132 REMARK 3 S TENSOR REMARK 3 S11: -0.0868 S12: -0.0312 S13: 0.0546 REMARK 3 S21: -0.2733 S22: 0.2051 S23: -0.2215 REMARK 3 S31: -0.3859 S32: 0.3766 S33: 0.0003 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 141:164) REMARK 3 ORIGIN FOR THE GROUP (A): -20.4084 -8.0109 12.6850 REMARK 3 T TENSOR REMARK 3 T11: 0.4294 T22: 0.1552 REMARK 3 T33: 0.2549 T12: 0.0886 REMARK 3 T13: -0.0232 T23: 0.0264 REMARK 3 L TENSOR REMARK 3 L11: 0.7915 L22: 2.3310 REMARK 3 L33: 2.4782 L12: 0.3823 REMARK 3 L13: 0.3566 L23: 2.1562 REMARK 3 S TENSOR REMARK 3 S11: -0.2715 S12: -0.0901 S13: 0.2036 REMARK 3 S21: -0.4271 S22: 0.2449 S23: 0.2037 REMARK 3 S31: -0.8596 S32: 0.0819 S33: 0.1563 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN B AND RESID 11:102) REMARK 3 ORIGIN FOR THE GROUP (A): -24.5462 -28.9417 11.4993 REMARK 3 T TENSOR REMARK 3 T11: 0.1522 T22: 0.2178 REMARK 3 T33: 0.2268 T12: 0.0097 REMARK 3 T13: -0.0232 T23: 0.0749 REMARK 3 L TENSOR REMARK 3 L11: 0.9468 L22: 1.9702 REMARK 3 L33: 3.1813 L12: 1.0549 REMARK 3 L13: 0.9272 L23: 1.8559 REMARK 3 S TENSOR REMARK 3 S11: 0.1580 S12: -0.2834 S13: -0.2732 REMARK 3 S21: -0.0451 S22: 0.0641 S23: -0.1785 REMARK 3 S31: 0.3136 S32: -0.8482 S33: 0.0401 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESID 103:131) REMARK 3 ORIGIN FOR THE GROUP (A): -33.7548 -35.8549 9.7351 REMARK 3 T TENSOR REMARK 3 T11: 0.3256 T22: 0.6623 REMARK 3 T33: 0.2966 T12: -0.2607 REMARK 3 T13: -0.1205 T23: 0.1579 REMARK 3 L TENSOR REMARK 3 L11: 1.0967 L22: 1.5049 REMARK 3 L33: 1.4163 L12: -0.3564 REMARK 3 L13: 0.0164 L23: -0.4047 REMARK 3 S TENSOR REMARK 3 S11: 0.6921 S12: -0.8375 S13: -0.1947 REMARK 3 S21: -0.0818 S22: -0.2583 S23: 0.2489 REMARK 3 S31: 0.8314 S32: -1.3689 S33: 0.3870 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 132:164) REMARK 3 ORIGIN FOR THE GROUP (A): -28.1220 -23.0460 22.4044 REMARK 3 T TENSOR REMARK 3 T11: 0.0687 T22: 0.6829 REMARK 3 T33: 0.2307 T12: 0.0892 REMARK 3 T13: 0.0860 T23: 0.0430 REMARK 3 L TENSOR REMARK 3 L11: 2.3457 L22: 2.8026 REMARK 3 L33: 3.4530 L12: 1.2203 REMARK 3 L13: 2.3265 L23: 2.8032 REMARK 3 S TENSOR REMARK 3 S11: 0.4843 S12: -0.8465 S13: -0.0469 REMARK 3 S21: 0.6164 S22: -0.4894 S23: 0.2994 REMARK 3 S31: 0.2422 S32: -1.9196 S33: 0.4915 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and (resid 11 through 75 or REMARK 3 resid 77 through 164 or resid 201)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and (resid 11 through 75 or REMARK 3 resid 77 through 164 or resid 201)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7AOM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-OCT-20. REMARK 100 THE DEPOSITION ID IS D_1292111805. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS 3.0.0 REMARK 200 DATA SCALING SOFTWARE : DIALS 3.0.0 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23223 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 46.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 12.80 REMARK 200 R MERGE (I) : 0.17350 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.6600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9 REMARK 200 DATA REDUNDANCY IN SHELL : 13.60 REMARK 200 R MERGE FOR SHELL (I) : 0.72520 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.750 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5LPG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS PH 8.5, 0.2M SODIUM ACETATE, REMARK 280 34% PEG 4000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.12150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.51600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.76600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.51600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.12150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 24.76600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ALA A 3 REMARK 465 SER A 4 REMARK 465 ALA A 5 REMARK 465 GLN A 6 REMARK 465 PRO A 7 REMARK 465 ARG A 8 REMARK 465 GLY A 9 REMARK 465 ARG A 10 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 ALA B 3 REMARK 465 SER B 4 REMARK 465 ALA B 5 REMARK 465 GLN B 6 REMARK 465 PRO B 7 REMARK 465 ARG B 8 REMARK 465 GLY B 9 REMARK 465 ARG B 10 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 37 -146.75 -148.15 REMARK 500 SER A 79 -178.16 -170.06 REMARK 500 SER B 37 -152.54 -145.04 REMARK 500 SER B 79 -177.53 -171.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 404 DISTANCE = 6.47 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 47 O REMARK 620 2 GLU A 67 OE2 62.6 REMARK 620 3 RQ2 A 201 O18 94.7 148.6 REMARK 620 4 RQ2 A 201 O22 70.3 73.3 78.8 REMARK 620 5 HOH A 320 O 93.5 86.8 117.7 158.4 REMARK 620 6 HOH A 383 O 146.4 84.9 111.0 93.2 93.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 47 O REMARK 620 2 GLU B 67 OE2 76.9 REMARK 620 3 RQ2 B 201 O18 101.7 174.0 REMARK 620 4 RQ2 B 201 O21 105.0 97.3 88.7 REMARK 620 5 HOH B 331 O 84.1 80.1 94.0 169.8 REMARK 620 6 HOH B 365 O 153.6 76.8 104.3 80.4 89.4 REMARK 620 N 1 2 3 4 5 DBREF 7AOM A 1 164 UNP Q9NV35 NUD15_HUMAN 1 164 DBREF 7AOM B 1 164 UNP Q9NV35 NUD15_HUMAN 1 164 SEQRES 1 A 164 MET THR ALA SER ALA GLN PRO ARG GLY ARG ARG PRO GLY SEQRES 2 A 164 VAL GLY VAL GLY VAL VAL VAL THR SER CYS LYS HIS PRO SEQRES 3 A 164 ARG CYS VAL LEU LEU GLY LYS ARG LYS GLY SER VAL GLY SEQRES 4 A 164 ALA GLY SER PHE GLN LEU PRO GLY GLY HIS LEU GLU PHE SEQRES 5 A 164 GLY GLU THR TRP GLU GLU CYS ALA GLN ARG GLU THR TRP SEQRES 6 A 164 GLU GLU ALA ALA LEU HIS LEU LYS ASN VAL HIS PHE ALA SEQRES 7 A 164 SER VAL VAL ASN SER PHE ILE GLU LYS GLU ASN TYR HIS SEQRES 8 A 164 TYR VAL THR ILE LEU MET LYS GLY GLU VAL ASP VAL THR SEQRES 9 A 164 HIS ASP SER GLU PRO LYS ASN VAL GLU PRO GLU LYS ASN SEQRES 10 A 164 GLU SER TRP GLU TRP VAL PRO TRP GLU GLU LEU PRO PRO SEQRES 11 A 164 LEU ASP GLN LEU PHE TRP GLY LEU ARG CYS LEU LYS GLU SEQRES 12 A 164 GLN GLY TYR ASP PRO PHE LYS GLU ASP LEU ASN HIS LEU SEQRES 13 A 164 VAL GLY TYR LYS GLY ASN HIS LEU SEQRES 1 B 164 MET THR ALA SER ALA GLN PRO ARG GLY ARG ARG PRO GLY SEQRES 2 B 164 VAL GLY VAL GLY VAL VAL VAL THR SER CYS LYS HIS PRO SEQRES 3 B 164 ARG CYS VAL LEU LEU GLY LYS ARG LYS GLY SER VAL GLY SEQRES 4 B 164 ALA GLY SER PHE GLN LEU PRO GLY GLY HIS LEU GLU PHE SEQRES 5 B 164 GLY GLU THR TRP GLU GLU CYS ALA GLN ARG GLU THR TRP SEQRES 6 B 164 GLU GLU ALA ALA LEU HIS LEU LYS ASN VAL HIS PHE ALA SEQRES 7 B 164 SER VAL VAL ASN SER PHE ILE GLU LYS GLU ASN TYR HIS SEQRES 8 B 164 TYR VAL THR ILE LEU MET LYS GLY GLU VAL ASP VAL THR SEQRES 9 B 164 HIS ASP SER GLU PRO LYS ASN VAL GLU PRO GLU LYS ASN SEQRES 10 B 164 GLU SER TRP GLU TRP VAL PRO TRP GLU GLU LEU PRO PRO SEQRES 11 B 164 LEU ASP GLN LEU PHE TRP GLY LEU ARG CYS LEU LYS GLU SEQRES 12 B 164 GLN GLY TYR ASP PRO PHE LYS GLU ASP LEU ASN HIS LEU SEQRES 13 B 164 VAL GLY TYR LYS GLY ASN HIS LEU HET RQ2 A 201 30 HET MG A 202 1 HET RQ2 B 201 30 HET MG B 202 1 HETNAM RQ2 GANCICLOVIR TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETSYN RQ2 [[(2~{R})-2-[(2-AZANYL-6-OXIDANYLIDENE-1~{H}-PURIN-9- HETSYN 2 RQ2 YL)METHOXY]-3-OXIDANYL-PROPOXY]-OXIDANYL-PHOSPHORYL] HETSYN 3 RQ2 PHOSPHONO HYDROGEN PHOSPHATE FORMUL 3 RQ2 2(C9 H16 N5 O13 P3) FORMUL 4 MG 2(MG 2+) FORMUL 7 HOH *215(H2 O) HELIX 1 AA1 THR A 55 ALA A 69 1 15 HELIX 2 AA2 GLU A 86 ASN A 89 5 4 HELIX 3 AA3 GLU A 126 LEU A 128 5 3 HELIX 4 AA4 PRO A 130 LEU A 134 5 5 HELIX 5 AA5 PHE A 135 GLN A 144 1 10 HELIX 6 AA6 LEU A 153 VAL A 157 5 5 HELIX 7 AA7 THR B 55 ALA B 69 1 15 HELIX 8 AA8 GLU B 86 ASN B 89 5 4 HELIX 9 AA9 GLU B 126 LEU B 128 5 3 HELIX 10 AB1 PRO B 130 LEU B 134 5 5 HELIX 11 AB2 PHE B 135 GLN B 144 1 10 HELIX 12 AB3 LEU B 153 VAL B 157 5 5 SHEET 1 AA1 4 GLY A 47 HIS A 49 0 SHEET 2 AA1 4 GLY A 13 THR A 21 -1 N VAL A 16 O GLY A 48 SHEET 3 AA1 4 TYR A 90 VAL A 101 1 O MET A 97 N VAL A 19 SHEET 4 AA1 4 LEU A 72 ILE A 85 -1 N ILE A 85 O TYR A 90 SHEET 1 AA2 3 PHE A 43 GLN A 44 0 SHEET 2 AA2 3 CYS A 28 LYS A 33 -1 N GLY A 32 O GLN A 44 SHEET 3 AA2 3 GLU A 121 PRO A 124 -1 O GLU A 121 N LEU A 31 SHEET 1 AA3 4 GLY B 47 HIS B 49 0 SHEET 2 AA3 4 GLY B 13 THR B 21 -1 N VAL B 16 O GLY B 48 SHEET 3 AA3 4 TYR B 90 VAL B 101 1 O MET B 97 N VAL B 19 SHEET 4 AA3 4 LEU B 72 ILE B 85 -1 N ILE B 85 O TYR B 90 SHEET 1 AA4 3 PHE B 43 GLN B 44 0 SHEET 2 AA4 3 CYS B 28 LYS B 33 -1 N GLY B 32 O GLN B 44 SHEET 3 AA4 3 GLU B 121 PRO B 124 -1 O GLU B 121 N LEU B 31 LINK O GLY A 47 MG MG A 202 1555 1555 2.90 LINK OE2 GLU A 67 MG MG A 202 1555 1555 2.42 LINK O18 RQ2 A 201 MG MG A 202 1555 1555 2.27 LINK O22 RQ2 A 201 MG MG A 202 1555 1555 2.61 LINK MG MG A 202 O HOH A 320 1555 1555 2.27 LINK MG MG A 202 O HOH A 383 1555 1555 2.29 LINK O GLY B 47 MG MG B 202 1555 1555 2.34 LINK OE2 GLU B 67 MG MG B 202 1555 1555 2.34 LINK O18 RQ2 B 201 MG MG B 202 1555 1555 2.46 LINK O21 RQ2 B 201 MG MG B 202 1555 1555 2.02 LINK MG MG B 202 O HOH B 331 1555 1555 2.41 LINK MG MG B 202 O HOH B 365 1555 1555 2.43 CRYST1 46.243 49.532 135.032 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021625 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020189 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007406 0.00000 MTRIX1 1 0.145576 -0.978209 -0.148038 -31.72937 1 MTRIX2 1 -0.974953 -0.167275 0.146582 -42.33542 1 MTRIX3 1 -0.168150 0.122991 -0.978059 31.97855 1