HEADER LIGASE 15-OCT-20 7AP4 TITLE THERMUS THERMOPHILUS ASPARTYL-TRNA SYNTHETASE IN COMPLEX WITH COMPOUND TITLE 2 ASPS7HMDDA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASPARTATE--TRNA(ASP) LIGASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ASPARTYL-TRNA SYNTHETASE 1,ASPRS1,DISCRIMINATING ASPARTYL- COMPND 5 TRNA SYNTHETASE,D-ASPRS; COMPND 6 EC: 6.1.1.12; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS (STRAIN HB8 / ATCC 27634 / SOURCE 3 DSM 579); SOURCE 4 ORGANISM_TAXID: 300852; SOURCE 5 STRAIN: HB8 / ATCC 27634 / DSM 579; SOURCE 6 GENE: ASPS1, TTHA0711; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: ROSSETTA 2 (DE3) PLYSS; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PETRUK KEYWDS PROTEIN-INHIBITOR COMPLEX, TRNA AMINOACYLATION, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR S.DE GRAEF,L.PANG,S.V.STRELKOV,S.D.WEEKS REVDAT 2 31-JAN-24 7AP4 1 REMARK REVDAT 1 09-DEC-20 7AP4 0 JRNL AUTH B.ZHANG,L.PANG,M.NAUTIYAL,S.DE GRAEF,B.GADAKH,E.LESCRINIER, JRNL AUTH 2 J.ROZENSKI,S.V.STRELKOV,S.D.WEEKS,A.VAN AERSCHOT JRNL TITL SYNTHESIS AND BIOLOGICAL EVALUATION OF JRNL TITL 2 1,3-DIDEAZAPURINE-LIKE 7-AMINO-5-HYDROXYMETHYL-BENZIMIDAZOLE JRNL TITL 3 RIBONUCLEOSIDE ANALOGUES AS AMINOACYL-TRNA SYNTHETASE JRNL TITL 4 INHIBITORS. JRNL REF MOLECULES V. 25 2020 JRNL REFN ESSN 1420-3049 JRNL PMID 33081246 JRNL DOI 10.3390/MOLECULES25204751 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 79.53 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.310 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 83416 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.460 REMARK 3 FREE R VALUE TEST SET COUNT : 2055 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 79.5260 - 5.3019 0.99 5541 134 0.1820 0.2166 REMARK 3 2 5.3019 - 4.2083 0.99 5461 131 0.1524 0.2059 REMARK 3 3 4.2083 - 3.6764 0.99 5453 124 0.1772 0.2102 REMARK 3 4 3.6764 - 3.3402 0.99 5455 149 0.1978 0.2397 REMARK 3 5 3.3402 - 3.1008 0.99 5465 137 0.2136 0.2533 REMARK 3 6 3.1008 - 2.9180 0.99 5384 153 0.2290 0.2587 REMARK 3 7 2.9180 - 2.7718 0.99 5419 155 0.2339 0.2683 REMARK 3 8 2.7718 - 2.6512 0.99 5427 116 0.2354 0.2592 REMARK 3 9 2.6512 - 2.5491 0.99 5413 125 0.2344 0.2799 REMARK 3 10 2.5491 - 2.4611 0.99 5419 138 0.2356 0.3043 REMARK 3 11 2.4611 - 2.3842 0.99 5448 103 0.2412 0.2774 REMARK 3 12 2.3842 - 2.3160 0.99 5375 138 0.2497 0.2972 REMARK 3 13 2.3160 - 2.2550 0.98 5351 150 0.2516 0.3015 REMARK 3 14 2.2550 - 2.2000 0.99 5376 157 0.2667 0.2888 REMARK 3 15 2.2000 - 2.1500 0.99 5374 145 0.2797 0.3125 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.600 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 47.89 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 70.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7AP4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-OCT-20. REMARK 100 THE DEPOSITION ID IS D_1292111246. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-FEB-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96863 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 94888 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.060 REMARK 200 RESOLUTION RANGE LOW (A) : 79.530 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.06 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.17 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.69900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1L0W REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: A 10 MG/ML PROTEIN SOLUTION WAS REMARK 280 PREPARED IN 10 MM TRIS PH 7.5, 100 MM NACL, 2.5 MM DTT AND 0.4% REMARK 280 W/V LOW MELTING POINT AGAROSE, MAINTAINING THE SAMPLE REMARK 280 TEMPERATURE AT 315 KELVIN. CRYSTALS WERE GROWN BY MIXING AN REMARK 280 EQUAL VOLUME OF THE PROTEIN SOLUTION WITH 8-12% PEG 4000, 0.1 M REMARK 280 MORPHEUS BUFFER SYSTEM 1 (MES/IMIDAZOLE) PH 7, 100 MM KCL, 20 V/ REMARK 280 V % GLYCEROL. FOR SOAKING A 4 MM SOLUTION OF COMPOUND IN DMSO REMARK 280 WAS USED. A ONE THIRD VOLUME OF THE INITIAL DROP SIZE WAS REMARK 280 PIPETTED CAREFULLY ONTO THE CRYSTAL CONTAINING DROP. THE SAMPLE REMARK 280 WAS THEN PLACED BACK OVER THE RESERVOIR AND INCUBATED FOR REMARK 280 APPROXIMATELY 2 HR. CRYSTALS WERE CAUGHT IN CRYOLOOPS AND REMARK 280 DIRECTLY FLASH FROZEN IN LIQUID NITROGEN., VAPOR DIFFUSION, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 56.26550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMER REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMER REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 45130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 177 REMARK 465 GLY A 178 REMARK 465 GLU A 433 REMARK 465 GLU A 434 REMARK 465 GLU A 435 REMARK 465 GLU A 436 REMARK 465 ARG A 579 REMARK 465 PRO A 580 REMARK 465 THR B 175 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 118 CG CD OE1 OE2 REMARK 470 LYS A 120 CG CD CE NZ REMARK 470 GLU A 121 CG CD OE1 OE2 REMARK 470 ARG A 160 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 228 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 331 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 343 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 345 CG CD CE NZ REMARK 470 ARG A 353 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 365 CG CD CE NZ REMARK 470 GLU A 372 CG CD OE1 OE2 REMARK 470 GLN A 376 CG CD OE1 NE2 REMARK 470 ARG A 381 NE CZ NH1 NH2 REMARK 470 ARG A 393 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 414 CG CD CE NZ REMARK 470 TRP A 431 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 431 CZ3 CH2 REMARK 470 ASP A 432 CG OD1 OD2 REMARK 470 HIS A 442 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 502 CG CD OE1 OE2 REMARK 470 ARG A 505 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 506 CG CD OE1 OE2 REMARK 470 LYS A 552 CG CD CE NZ REMARK 470 ARG B 29 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 119 CG CD OE1 OE2 REMARK 470 LYS B 120 CG CD CE NZ REMARK 470 LEU B 227 CG CD1 CD2 REMARK 470 ARG B 231 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 300 CG CD CE NZ REMARK 470 ARG B 307 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 312 CG CD NE CZ NH1 NH2 REMARK 470 PHE B 314 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 316 CG CD OE1 OE2 REMARK 470 GLU B 318 CG CD OE1 OE2 REMARK 470 VAL B 320 CG1 CG2 REMARK 470 LEU B 323 CG CD1 CD2 REMARK 470 LEU B 325 CG CD1 CD2 REMARK 470 LYS B 327 CG CD CE NZ REMARK 470 LYS B 332 CG CD CE NZ REMARK 470 GLU B 336 CG CD OE1 OE2 REMARK 470 GLU B 338 CG CD OE1 OE2 REMARK 470 GLU B 339 CG CD OE1 OE2 REMARK 470 LYS B 342 CG CD CE NZ REMARK 470 ARG B 343 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 345 CG CD CE NZ REMARK 470 ARG B 353 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 355 CG CD OE1 OE2 REMARK 470 GLU B 356 CG CD OE1 OE2 REMARK 470 SER B 360 OG REMARK 470 LYS B 365 CG CD CE NZ REMARK 470 GLU B 368 CG CD OE1 OE2 REMARK 470 ARG B 371 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 372 CG CD OE1 OE2 REMARK 470 GLN B 376 CG CD OE1 NE2 REMARK 470 ARG B 381 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 387 CG CD1 CD2 REMARK 470 ARG B 393 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 394 CG CD CE NZ REMARK 470 LYS B 414 CG CD CE NZ REMARK 470 GLU B 433 CG CD OE1 OE2 REMARK 470 GLU B 434 CG CD OE1 OE2 REMARK 470 GLU B 435 CG CD OE1 OE2 REMARK 470 ARG B 495 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 502 CG CD OE1 OE2 REMARK 470 GLU B 503 CG CD OE1 OE2 REMARK 470 ARG B 505 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 506 CG CD OE1 OE2 REMARK 470 LYS B 507 CG CD CE NZ REMARK 470 GLU B 567 CG CD OE1 OE2 REMARK 470 GLU B 568 CG CD OE1 OE2 REMARK 470 ARG B 579 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 66 -1.64 72.05 REMARK 500 TYR A 130 51.95 -113.72 REMARK 500 ASP A 213 -52.15 77.40 REMARK 500 ALA A 229 30.73 71.82 REMARK 500 PRO A 326 39.69 -82.85 REMARK 500 LYS A 345 5.54 80.96 REMARK 500 ALA A 352 140.07 -174.27 REMARK 500 SER A 360 127.00 -170.66 REMARK 500 HIS A 442 -66.59 -151.76 REMARK 500 TYR B 130 53.13 -114.96 REMARK 500 GLU B 177 12.80 -67.88 REMARK 500 ASP B 213 -52.86 77.60 REMARK 500 ASP B 226 -105.39 -97.73 REMARK 500 LEU B 227 94.94 -60.26 REMARK 500 ALA B 352 -150.39 -164.20 REMARK 500 ARG B 371 -54.28 -167.59 REMARK 500 GLU B 434 -72.95 -73.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue RSN A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue RSN B 601 DBREF 7AP4 A 1 580 UNP Q5SKD2 SYD_THET8 1 580 DBREF 7AP4 B 1 580 UNP Q5SKD2 SYD_THET8 1 580 SEQADV 7AP4 GLY A 0 UNP Q5SKD2 EXPRESSION TAG SEQADV 7AP4 GLY B 0 UNP Q5SKD2 EXPRESSION TAG SEQRES 1 A 581 GLY MET ARG ARG THR HIS TYR ALA GLY SER LEU ARG GLU SEQRES 2 A 581 THR HIS VAL GLY GLU GLU VAL VAL LEU GLU GLY TRP VAL SEQRES 3 A 581 ASN ARG ARG ARG ASP LEU GLY GLY LEU ILE PHE LEU ASP SEQRES 4 A 581 LEU ARG ASP ARG GLU GLY LEU VAL GLN LEU VAL ALA HIS SEQRES 5 A 581 PRO ALA SER PRO ALA TYR ALA THR ALA GLU ARG VAL ARG SEQRES 6 A 581 PRO GLU TRP VAL VAL ARG ALA LYS GLY LEU VAL ARG LEU SEQRES 7 A 581 ARG PRO GLU PRO ASN PRO ARG LEU ALA THR GLY ARG VAL SEQRES 8 A 581 GLU VAL GLU LEU SER ALA LEU GLU VAL LEU ALA GLU ALA SEQRES 9 A 581 LYS THR PRO PRO PHE PRO VAL ASP ALA GLY TRP ARG GLY SEQRES 10 A 581 GLU GLU GLU LYS GLU ALA SER GLU GLU LEU ARG LEU LYS SEQRES 11 A 581 TYR ARG TYR LEU ASP LEU ARG ARG ARG ARG MET GLN GLU SEQRES 12 A 581 ASN LEU ARG LEU ARG HIS ARG VAL ILE LYS ALA ILE TRP SEQRES 13 A 581 ASP PHE LEU ASP ARG GLU GLY PHE VAL GLN VAL GLU THR SEQRES 14 A 581 PRO PHE LEU THR LYS SER THR PRO GLU GLY ALA ARG ASP SEQRES 15 A 581 PHE LEU VAL PRO TYR ARG HIS GLU PRO GLY LEU PHE TYR SEQRES 16 A 581 ALA LEU PRO GLN SER PRO GLN LEU PHE LYS GLN MET LEU SEQRES 17 A 581 MET VAL ALA GLY LEU ASP ARG TYR PHE GLN ILE ALA ARG SEQRES 18 A 581 CYS PHE ARG ASP GLU ASP LEU ARG ALA ASP ARG GLN PRO SEQRES 19 A 581 ASP PHE THR GLN LEU ASP LEU GLU MET SER PHE VAL GLU SEQRES 20 A 581 VAL GLU ASP VAL LEU GLU LEU ASN GLU ARG LEU MET ALA SEQRES 21 A 581 HIS VAL PHE ARG GLU ALA LEU GLY VAL GLU LEU PRO LEU SEQRES 22 A 581 PRO PHE PRO ARG LEU SER TYR GLU GLU ALA MET GLU ARG SEQRES 23 A 581 TYR GLY SER ASP LYS PRO ASP LEU ARG PHE GLY LEU GLU SEQRES 24 A 581 LEU LYS GLU VAL GLY PRO LEU PHE ARG GLN SER GLY PHE SEQRES 25 A 581 ARG VAL PHE GLN GLU ALA GLU SER VAL LYS ALA LEU ALA SEQRES 26 A 581 LEU PRO LYS ALA LEU SER ARG LYS GLU VAL ALA GLU LEU SEQRES 27 A 581 GLU GLU VAL ALA LYS ARG HIS LYS ALA GLN GLY LEU ALA SEQRES 28 A 581 TRP ALA ARG VAL GLU GLU GLY GLY PHE SER GLY GLY VAL SEQRES 29 A 581 ALA LYS PHE LEU GLU PRO VAL ARG GLU ALA LEU LEU GLN SEQRES 30 A 581 ALA THR GLU ALA ARG PRO GLY ASP THR LEU LEU PHE VAL SEQRES 31 A 581 ALA GLY PRO ARG LYS VAL ALA ALA THR ALA LEU GLY ALA SEQRES 32 A 581 VAL ARG LEU ARG ALA ALA ASP LEU LEU GLY LEU LYS ARG SEQRES 33 A 581 GLU GLY PHE ARG PHE LEU TRP VAL VAL ASP PHE PRO LEU SEQRES 34 A 581 LEU GLU TRP ASP GLU GLU GLU GLU ALA TRP THR TYR MET SEQRES 35 A 581 HIS HIS PRO PHE THR SER PRO HIS PRO GLU ASP LEU PRO SEQRES 36 A 581 LEU LEU GLU LYS ASP PRO GLY ARG VAL ARG ALA LEU ALA SEQRES 37 A 581 TYR ASP LEU VAL LEU ASN GLY VAL GLU VAL GLY GLY GLY SEQRES 38 A 581 SER ILE ARG ILE HIS ASP PRO ARG LEU GLN ALA ARG VAL SEQRES 39 A 581 PHE ARG LEU LEU GLY ILE GLY GLU GLU GLU GLN ARG GLU SEQRES 40 A 581 LYS PHE GLY PHE PHE LEU GLU ALA LEU GLU TYR GLY ALA SEQRES 41 A 581 PRO PRO HIS GLY GLY ILE ALA TRP GLY LEU ASP ARG LEU SEQRES 42 A 581 LEU ALA LEU MET THR GLY SER PRO SER ILE ARG GLU VAL SEQRES 43 A 581 ILE ALA PHE PRO LYS ASN LYS GLU GLY LYS ASP PRO LEU SEQRES 44 A 581 THR GLY ALA PRO SER PRO VAL PRO GLU GLU GLN LEU ARG SEQRES 45 A 581 GLU LEU GLY LEU MET VAL VAL ARG PRO SEQRES 1 B 581 GLY MET ARG ARG THR HIS TYR ALA GLY SER LEU ARG GLU SEQRES 2 B 581 THR HIS VAL GLY GLU GLU VAL VAL LEU GLU GLY TRP VAL SEQRES 3 B 581 ASN ARG ARG ARG ASP LEU GLY GLY LEU ILE PHE LEU ASP SEQRES 4 B 581 LEU ARG ASP ARG GLU GLY LEU VAL GLN LEU VAL ALA HIS SEQRES 5 B 581 PRO ALA SER PRO ALA TYR ALA THR ALA GLU ARG VAL ARG SEQRES 6 B 581 PRO GLU TRP VAL VAL ARG ALA LYS GLY LEU VAL ARG LEU SEQRES 7 B 581 ARG PRO GLU PRO ASN PRO ARG LEU ALA THR GLY ARG VAL SEQRES 8 B 581 GLU VAL GLU LEU SER ALA LEU GLU VAL LEU ALA GLU ALA SEQRES 9 B 581 LYS THR PRO PRO PHE PRO VAL ASP ALA GLY TRP ARG GLY SEQRES 10 B 581 GLU GLU GLU LYS GLU ALA SER GLU GLU LEU ARG LEU LYS SEQRES 11 B 581 TYR ARG TYR LEU ASP LEU ARG ARG ARG ARG MET GLN GLU SEQRES 12 B 581 ASN LEU ARG LEU ARG HIS ARG VAL ILE LYS ALA ILE TRP SEQRES 13 B 581 ASP PHE LEU ASP ARG GLU GLY PHE VAL GLN VAL GLU THR SEQRES 14 B 581 PRO PHE LEU THR LYS SER THR PRO GLU GLY ALA ARG ASP SEQRES 15 B 581 PHE LEU VAL PRO TYR ARG HIS GLU PRO GLY LEU PHE TYR SEQRES 16 B 581 ALA LEU PRO GLN SER PRO GLN LEU PHE LYS GLN MET LEU SEQRES 17 B 581 MET VAL ALA GLY LEU ASP ARG TYR PHE GLN ILE ALA ARG SEQRES 18 B 581 CYS PHE ARG ASP GLU ASP LEU ARG ALA ASP ARG GLN PRO SEQRES 19 B 581 ASP PHE THR GLN LEU ASP LEU GLU MET SER PHE VAL GLU SEQRES 20 B 581 VAL GLU ASP VAL LEU GLU LEU ASN GLU ARG LEU MET ALA SEQRES 21 B 581 HIS VAL PHE ARG GLU ALA LEU GLY VAL GLU LEU PRO LEU SEQRES 22 B 581 PRO PHE PRO ARG LEU SER TYR GLU GLU ALA MET GLU ARG SEQRES 23 B 581 TYR GLY SER ASP LYS PRO ASP LEU ARG PHE GLY LEU GLU SEQRES 24 B 581 LEU LYS GLU VAL GLY PRO LEU PHE ARG GLN SER GLY PHE SEQRES 25 B 581 ARG VAL PHE GLN GLU ALA GLU SER VAL LYS ALA LEU ALA SEQRES 26 B 581 LEU PRO LYS ALA LEU SER ARG LYS GLU VAL ALA GLU LEU SEQRES 27 B 581 GLU GLU VAL ALA LYS ARG HIS LYS ALA GLN GLY LEU ALA SEQRES 28 B 581 TRP ALA ARG VAL GLU GLU GLY GLY PHE SER GLY GLY VAL SEQRES 29 B 581 ALA LYS PHE LEU GLU PRO VAL ARG GLU ALA LEU LEU GLN SEQRES 30 B 581 ALA THR GLU ALA ARG PRO GLY ASP THR LEU LEU PHE VAL SEQRES 31 B 581 ALA GLY PRO ARG LYS VAL ALA ALA THR ALA LEU GLY ALA SEQRES 32 B 581 VAL ARG LEU ARG ALA ALA ASP LEU LEU GLY LEU LYS ARG SEQRES 33 B 581 GLU GLY PHE ARG PHE LEU TRP VAL VAL ASP PHE PRO LEU SEQRES 34 B 581 LEU GLU TRP ASP GLU GLU GLU GLU ALA TRP THR TYR MET SEQRES 35 B 581 HIS HIS PRO PHE THR SER PRO HIS PRO GLU ASP LEU PRO SEQRES 36 B 581 LEU LEU GLU LYS ASP PRO GLY ARG VAL ARG ALA LEU ALA SEQRES 37 B 581 TYR ASP LEU VAL LEU ASN GLY VAL GLU VAL GLY GLY GLY SEQRES 38 B 581 SER ILE ARG ILE HIS ASP PRO ARG LEU GLN ALA ARG VAL SEQRES 39 B 581 PHE ARG LEU LEU GLY ILE GLY GLU GLU GLU GLN ARG GLU SEQRES 40 B 581 LYS PHE GLY PHE PHE LEU GLU ALA LEU GLU TYR GLY ALA SEQRES 41 B 581 PRO PRO HIS GLY GLY ILE ALA TRP GLY LEU ASP ARG LEU SEQRES 42 B 581 LEU ALA LEU MET THR GLY SER PRO SER ILE ARG GLU VAL SEQRES 43 B 581 ILE ALA PHE PRO LYS ASN LYS GLU GLY LYS ASP PRO LEU SEQRES 44 B 581 THR GLY ALA PRO SER PRO VAL PRO GLU GLU GLN LEU ARG SEQRES 45 B 581 GLU LEU GLY LEU MET VAL VAL ARG PRO HET RSN A 601 55 HET RSN B 601 55 HETNAM RSN (3~{S})-3-AZANYL-4-[[(2~{R},3~{S},4~{R},5~{R})-5-[7- HETNAM 2 RSN AZANYL-5-(HYDROXYMETHYL)BENZIMIDAZOL-1-YL]-3,4- HETNAM 3 RSN BIS(OXIDANYL)OXOLAN-2-YL]METHOXYSULFONYLAMINO]-4- HETNAM 4 RSN OXIDANYLIDENE-BUTANOIC ACID FORMUL 3 RSN 2(C17 H23 N5 O10 S) FORMUL 5 HOH *297(H2 O) HELIX 1 AA1 TYR A 6 LEU A 10 5 5 HELIX 2 AA2 ARG A 11 VAL A 15 5 5 HELIX 3 AA3 ALA A 56 VAL A 63 1 8 HELIX 4 AA4 ALA A 112 GLY A 116 5 5 HELIX 5 AA5 SER A 123 TYR A 130 1 8 HELIX 6 AA6 TYR A 130 LEU A 135 1 6 HELIX 7 AA7 ARG A 137 GLU A 161 1 25 HELIX 8 AA8 PRO A 200 ALA A 210 1 11 HELIX 9 AA9 GLU A 246 GLY A 267 1 22 HELIX 10 AB1 TYR A 279 GLY A 287 1 9 HELIX 11 AB2 GLY A 303 PHE A 306 5 4 HELIX 12 AB3 PHE A 311 GLU A 316 1 6 HELIX 13 AB4 SER A 330 HIS A 344 1 15 HELIX 14 AB5 VAL A 363 GLU A 368 1 6 HELIX 15 AB6 VAL A 370 GLU A 379 1 10 HELIX 16 AB7 PRO A 392 LEU A 411 1 20 HELIX 17 AB8 HIS A 449 LEU A 453 5 5 HELIX 18 AB9 PRO A 454 ASP A 459 1 6 HELIX 19 AC1 PRO A 460 VAL A 463 5 4 HELIX 20 AC2 ASP A 486 GLY A 498 1 13 HELIX 21 AC3 GLY A 500 GLU A 516 1 17 HELIX 22 AC4 LEU A 529 THR A 537 1 9 HELIX 23 AC5 SER A 541 ILE A 546 5 6 HELIX 24 AC6 PRO A 566 GLU A 572 1 7 HELIX 25 AC7 TYR B 6 LEU B 10 5 5 HELIX 26 AC8 ARG B 11 VAL B 15 5 5 HELIX 27 AC9 ALA B 56 VAL B 63 1 8 HELIX 28 AD1 ALA B 112 GLY B 116 5 5 HELIX 29 AD2 SER B 123 TYR B 130 1 8 HELIX 30 AD3 TYR B 130 LEU B 135 1 6 HELIX 31 AD4 ARG B 137 GLU B 161 1 25 HELIX 32 AD5 PRO B 200 ALA B 210 1 11 HELIX 33 AD6 GLU B 246 LEU B 266 1 21 HELIX 34 AD7 TYR B 279 GLY B 287 1 9 HELIX 35 AD8 PHE B 311 GLU B 316 1 6 HELIX 36 AD9 SER B 330 HIS B 344 1 15 HELIX 37 AE1 VAL B 363 GLU B 368 1 6 HELIX 38 AE2 ARG B 371 GLU B 379 1 9 HELIX 39 AE3 PRO B 392 LEU B 411 1 20 HELIX 40 AE4 HIS B 449 LEU B 453 5 5 HELIX 41 AE5 PRO B 454 ASP B 459 1 6 HELIX 42 AE6 PRO B 460 VAL B 463 5 4 HELIX 43 AE7 ASP B 486 LEU B 497 1 12 HELIX 44 AE8 GLY B 500 LEU B 515 1 16 HELIX 45 AE9 GLU B 516 GLY B 518 5 3 HELIX 46 AF1 LEU B 529 THR B 537 1 9 HELIX 47 AF2 SER B 541 ILE B 546 5 6 HELIX 48 AF3 PRO B 566 LEU B 573 1 8 SHEET 1 AA1 6 GLU A 18 LEU A 31 0 SHEET 2 AA1 6 LEU A 34 ASP A 41 -1 O PHE A 36 N ARG A 29 SHEET 3 AA1 6 GLY A 44 ALA A 50 -1 O LEU A 48 N LEU A 37 SHEET 4 AA1 6 VAL A 90 ALA A 101 1 O LEU A 94 N VAL A 49 SHEET 5 AA1 6 VAL A 68 LEU A 77 -1 N ARG A 76 O GLU A 91 SHEET 6 AA1 6 GLU A 18 LEU A 31 -1 N LEU A 21 O ALA A 71 SHEET 1 AA2 8 VAL A 164 GLN A 165 0 SHEET 2 AA2 8 ARG A 214 PHE A 222 1 O ARG A 214 N VAL A 164 SHEET 3 AA2 8 ASP A 234 SER A 243 -1 O GLN A 237 N ALA A 219 SHEET 4 AA2 8 HIS A 522 GLY A 528 -1 O GLY A 523 N MET A 242 SHEET 5 AA2 8 VAL A 475 ILE A 482 -1 N VAL A 477 O GLY A 528 SHEET 6 AA2 8 ALA A 467 LEU A 472 -1 N LEU A 470 O GLY A 478 SHEET 7 AA2 8 PHE A 420 VAL A 424 -1 N LEU A 421 O VAL A 471 SHEET 8 AA2 8 ARG A 276 SER A 278 1 N LEU A 277 O TRP A 422 SHEET 1 AA3 2 LEU A 183 PRO A 185 0 SHEET 2 AA3 2 PHE A 193 ALA A 195 -1 O TYR A 194 N VAL A 184 SHEET 1 AA4 5 LYS A 300 GLU A 301 0 SHEET 2 AA4 5 SER A 319 LEU A 325 -1 O ALA A 322 N LYS A 300 SHEET 3 AA4 5 THR A 385 GLY A 391 -1 O THR A 385 N LEU A 325 SHEET 4 AA4 5 ALA A 350 VAL A 354 -1 N ALA A 352 O LEU A 386 SHEET 5 AA4 5 PHE A 359 SER A 360 -1 O SER A 360 N ARG A 353 SHEET 1 AA5 2 LEU A 429 GLU A 430 0 SHEET 2 AA5 2 THR A 439 TYR A 440 -1 O THR A 439 N GLU A 430 SHEET 1 AA6 3 SER A 563 PRO A 564 0 SHEET 2 AA6 3 LEU B 192 ALA B 195 -1 O PHE B 193 N SER A 563 SHEET 3 AA6 3 LEU B 183 PRO B 185 -1 N VAL B 184 O TYR B 194 SHEET 1 AA7 2 LEU A 575 VAL A 577 0 SHEET 2 AA7 2 LEU B 575 VAL B 577 -1 O MET B 576 N MET A 576 SHEET 1 AA8 6 GLU B 18 LEU B 31 0 SHEET 2 AA8 6 LEU B 34 ASP B 41 -1 O ASP B 38 N ASN B 26 SHEET 3 AA8 6 GLY B 44 ALA B 50 -1 O LEU B 48 N LEU B 37 SHEET 4 AA8 6 VAL B 90 ALA B 101 1 O VAL B 92 N VAL B 49 SHEET 5 AA8 6 VAL B 68 LEU B 77 -1 N LEU B 74 O GLU B 93 SHEET 6 AA8 6 GLU B 18 LEU B 31 -1 N LEU B 21 O ALA B 71 SHEET 1 AA9 8 VAL B 164 GLN B 165 0 SHEET 2 AA9 8 ARG B 214 PHE B 222 1 O ARG B 214 N VAL B 164 SHEET 3 AA9 8 ASP B 234 SER B 243 -1 O PHE B 235 N CYS B 221 SHEET 4 AA9 8 HIS B 522 GLY B 528 -1 O GLY B 523 N MET B 242 SHEET 5 AA9 8 VAL B 475 ILE B 482 -1 N VAL B 477 O GLY B 528 SHEET 6 AA9 8 ALA B 467 LEU B 472 -1 N LEU B 472 O VAL B 475 SHEET 7 AA9 8 PHE B 420 VAL B 424 -1 N LEU B 421 O VAL B 471 SHEET 8 AA9 8 ARG B 276 SER B 278 1 N LEU B 277 O TRP B 422 SHEET 1 AB1 4 LYS B 300 GLU B 301 0 SHEET 2 AB1 4 SER B 319 LEU B 325 -1 O ALA B 322 N LYS B 300 SHEET 3 AB1 4 THR B 385 GLY B 391 -1 O GLY B 391 N SER B 319 SHEET 4 AB1 4 ALA B 350 TRP B 351 -1 N ALA B 350 O PHE B 388 SHEET 1 AB2 2 LEU B 429 ASP B 432 0 SHEET 2 AB2 2 ALA B 437 TYR B 440 -1 O ALA B 437 N ASP B 432 CISPEP 1 LEU A 272 PRO A 273 0 -0.12 CISPEP 2 ALA A 561 PRO A 562 0 -1.29 CISPEP 3 LEU B 272 PRO B 273 0 -3.55 CISPEP 4 ALA B 561 PRO B 562 0 -2.57 SITE 1 AC1 19 SER A 199 GLN A 201 LYS A 204 ARG A 223 SITE 2 AC1 19 ARG A 231 GLN A 232 PHE A 235 GLN A 237 SITE 3 AC1 19 GLU A 476 VAL A 477 GLY A 478 GLY A 479 SITE 4 AC1 19 GLY A 480 ARG A 483 ILE A 525 ALA A 526 SITE 5 AC1 19 GLY A 528 HOH A 701 HOH A 726 SITE 1 AC2 25 GLU B 177 SER B 199 GLN B 201 LYS B 204 SITE 2 AC2 25 ARG B 223 ARG B 231 GLN B 232 PHE B 235 SITE 3 AC2 25 GLN B 237 HIS B 443 GLU B 476 VAL B 477 SITE 4 AC2 25 GLY B 478 GLY B 479 GLY B 480 ARG B 483 SITE 5 AC2 25 GLY B 524 ILE B 525 ALA B 526 GLY B 528 SITE 6 AC2 25 ARG B 531 HOH B 708 HOH B 721 HOH B 736 SITE 7 AC2 25 HOH B 799 CRYST1 82.277 112.531 88.253 90.00 104.86 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012154 0.000000 0.003225 0.00000 SCALE2 0.000000 0.008886 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011723 0.00000