HEADER TRANSPORT PROTEIN 16-OCT-20 7APE TITLE CRYSTAL STRUCTURE OF LPQY FROM MYCOBACTERIUM THERMORESISTIBLE IN TITLE 2 COMPLEX WITH TREHALOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIPOPROTEIN (SUGAR-BINDING) LPQY; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOLICIBACTERIUM THERMORESISTIBILE; SOURCE 3 ORGANISM_TAXID: 1797; SOURCE 4 GENE: RMCT_2827; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS LPQY, ABC-TRANSPORTER, TREHALOSE COMPLEX, TUBERCULOSIS, TRANSPORT KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.M.FURZE,C.M.GUY,J.ANGULA,A.D.CAMERON,E.FULLAM REVDAT 3 01-MAY-24 7APE 1 REMARK REVDAT 2 21-JUL-21 7APE 1 JRNL REVDAT 1 28-APR-21 7APE 0 JRNL AUTH C.M.FURZE,I.DELSO,E.CASAL,C.S.GUY,C.SEDDON,C.M.BROWN, JRNL AUTH 2 H.L.PARKER,A.RADHAKRISHNAN,R.PACHECO-GOMEZ,P.J.STANSFELD, JRNL AUTH 3 J.ANGULO,A.D.CAMERON,E.FULLAM JRNL TITL STRUCTURAL BASIS OF TREHALOSE RECOGNITION BY THE JRNL TITL 2 MYCOBACTERIAL LPQY-SUGABC TRANSPORTER. JRNL REF J.BIOL.CHEM. V. 296 00307 2021 JRNL REFN ESSN 1083-351X JRNL PMID 33476646 JRNL DOI 10.1016/J.JBC.2021.100307 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 102412 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 5141 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 5.2800 - 4.1900 1.00 3415 184 0.1379 0.1565 REMARK 3 2 4.1900 - 3.6600 1.00 3390 157 0.1445 0.1691 REMARK 3 3 3.6600 - 3.3300 1.00 3351 167 0.1530 0.1869 REMARK 3 4 3.3300 - 3.0900 1.00 3304 184 0.1603 0.1722 REMARK 3 5 3.0900 - 2.9100 1.00 3329 161 0.1672 0.1756 REMARK 3 6 2.9100 - 2.7600 1.00 3298 192 0.1642 0.1864 REMARK 3 7 2.7600 - 2.6400 1.00 3296 163 0.1608 0.2131 REMARK 3 8 2.6400 - 2.5400 1.00 3290 195 0.1618 0.2078 REMARK 3 9 2.5400 - 2.4500 1.00 3276 172 0.1624 0.1977 REMARK 3 10 2.4500 - 2.3700 1.00 3245 178 0.1581 0.1951 REMARK 3 11 2.3700 - 2.3100 1.00 3282 175 0.1662 0.2199 REMARK 3 12 2.3100 - 2.2500 1.00 3268 164 0.1620 0.1753 REMARK 3 13 2.2500 - 2.1900 1.00 3272 160 0.1662 0.1991 REMARK 3 14 2.1900 - 2.1400 1.00 3243 182 0.1671 0.2264 REMARK 3 15 2.1400 - 2.1000 1.00 3270 167 0.1734 0.2057 REMARK 3 16 2.1000 - 2.0500 1.00 3250 169 0.1746 0.2087 REMARK 3 17 2.0500 - 2.0100 1.00 3236 194 0.1783 0.2399 REMARK 3 18 2.0100 - 1.9800 1.00 3254 150 0.1916 0.2493 REMARK 3 19 1.9800 - 1.9500 1.00 3252 180 0.1903 0.2315 REMARK 3 20 1.9500 - 1.9100 1.00 3210 182 0.1973 0.2364 REMARK 3 21 1.9100 - 1.8800 1.00 3223 172 0.2069 0.2244 REMARK 3 22 1.8800 - 1.8600 1.00 3289 162 0.2168 0.2602 REMARK 3 23 1.8600 - 1.8300 0.99 3183 180 0.2222 0.2648 REMARK 3 24 1.8300 - 1.8100 0.98 3157 193 0.2392 0.2846 REMARK 3 25 1.8100 - 1.7800 0.97 3109 176 0.2473 0.2923 REMARK 3 26 1.7800 - 1.7600 0.96 3139 144 0.2610 0.2954 REMARK 3 27 1.7600 - 1.7400 0.93 2999 166 0.2820 0.3109 REMARK 3 28 1.7200 - 1.7000 0.88 2861 154 0.3151 0.3278 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.205 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.569 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.14 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 6850 REMARK 3 ANGLE : 1.060 9361 REMARK 3 CHIRALITY : 0.057 1071 REMARK 3 PLANARITY : 0.009 1247 REMARK 3 DIHEDRAL : 4.452 4889 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7APE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-OCT-20. REMARK 100 THE DEPOSITION ID IS D_1292111844. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-MAY-19 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 102435 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 54.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 23.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.1600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: LPQY IODIDE SOAK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 6.0, 50 % W/V REMARK 280 POLYPROPYLENE GLYCOL 400, 5 % DMSO, 1 MM TCEP, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 108.28850 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 46.18050 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 46.18050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 54.14425 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 46.18050 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 46.18050 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 162.43275 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 46.18050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 46.18050 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 54.14425 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 46.18050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 46.18050 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 162.43275 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 108.28850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 771 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ALA A 3 REMARK 465 SER A 4 REMARK 465 THR A 5 REMARK 465 VAL A 6 REMARK 465 ALA A 7 REMARK 465 ALA A 8 REMARK 465 CYS A 9 REMARK 465 GLY A 10 REMARK 465 SER A 11 REMARK 465 ASP A 12 REMARK 465 SER A 13 REMARK 465 LEU A 449 REMARK 465 ILE A 450 REMARK 465 PRO A 451 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 ALA B 3 REMARK 465 SER B 4 REMARK 465 THR B 5 REMARK 465 VAL B 6 REMARK 465 ALA B 7 REMARK 465 ALA B 8 REMARK 465 CYS B 9 REMARK 465 GLY B 10 REMARK 465 SER B 11 REMARK 465 ASP B 12 REMARK 465 SER B 13 REMARK 465 LEU B 449 REMARK 465 ILE B 450 REMARK 465 PRO B 451 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR B 295 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE22 GLN A 411 O HOH A 602 1.40 REMARK 500 OE2 GLU B 438 HE21 GLN B 442 1.46 REMARK 500 OE2 GLU A 438 HE21 GLN A 442 1.47 REMARK 500 HG SER A 97 O HOH A 601 1.48 REMARK 500 HE ARG A 203 O HOH A 605 1.52 REMARK 500 HH22 ARG A 213 OD1 ASP A 434 1.55 REMARK 500 O HOH B 603 O HOH B 817 1.56 REMARK 500 OG SER A 97 O HOH A 601 1.78 REMARK 500 OE2 GLU B 105 O HOH B 601 2.00 REMARK 500 OE2 GLU A 438 NE2 GLN A 442 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 810 O HOH A 810 7466 2.08 REMARK 500 O HOH B 839 O HOH B 871 6465 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 213 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 133 -168.08 -111.21 REMARK 500 ASN A 134 139.78 -175.27 REMARK 500 THR A 207 18.76 -144.15 REMARK 500 ASP B 71 99.55 -69.28 REMARK 500 THR B 133 -168.12 -109.90 REMARK 500 ASN B 134 140.83 -173.25 REMARK 500 ASP B 146 -77.38 -76.39 REMARK 500 THR B 207 18.35 -140.18 REMARK 500 REMARK 500 REMARK: NULL DBREF1 7APE A 1 451 UNP A0A100XFZ4_MYCTH DBREF2 7APE A A0A100XFZ4 39 489 DBREF1 7APE B 1 451 UNP A0A100XFZ4_MYCTH DBREF2 7APE B A0A100XFZ4 39 489 SEQRES 1 A 451 MET THR ALA SER THR VAL ALA ALA CYS GLY SER ASP SER SEQRES 2 A 451 GLY GLU ILE VAL ILE SER TYR TYR THR PRO ALA ASN GLU SEQRES 3 A 451 ALA ALA THR PHE THR ALA VAL ALA GLN ARG CYS ASN ALA SEQRES 4 A 451 GLU LEU GLY GLY ARG PHE ARG ILE GLU GLN ARG SER LEU SEQRES 5 A 451 PRO ARG GLU ALA ASP ALA GLN ARG LEU GLN LEU ALA ARG SEQRES 6 A 451 ARG LEU THR GLY ASN ASP ARG SER LEU ASP VAL MET ALA SEQRES 7 A 451 LEU ASP VAL VAL TRP THR ALA GLU PHE ALA GLU ALA GLY SEQRES 8 A 451 TRP ALA LEU PRO LEU SER GLU ASP PRO ALA GLY LEU ALA SEQRES 9 A 451 GLU ALA ASP ALA THR THR ASN THR LEU PRO GLY PRO LEU SEQRES 10 A 451 GLU THR ALA LYS TRP ASN GLY GLU LEU TYR ALA ALA PRO SEQRES 11 A 451 ILE THR THR ASN THR GLN LEU LEU TRP TYR ARG ALA ASP SEQRES 12 A 451 LEU MET ASP GLU PRO PRO ALA THR TRP ASP GLU MET LEU SEQRES 13 A 451 SER GLU ALA ALA ARG LEU HIS ALA GLN GLY GLY PRO SER SEQRES 14 A 451 TRP ILE ALA VAL GLN GLY LYS GLN TYR GLU GLY LEU VAL SEQRES 15 A 451 VAL TRP PHE ASN THR LEU LEU GLU SER ALA GLY GLY GLN SEQRES 16 A 451 VAL LEU SER ASP ASP GLY GLN ARG VAL THR LEU THR ASP SEQRES 17 A 451 THR PRO GLU HIS ARG ALA ALA THR VAL LYS ALA LEU GLU SEQRES 18 A 451 ILE ILE LYS ALA VAL ALA THR ALA PRO GLY ALA ASP PRO SEQRES 19 A 451 SER ILE THR GLN THR ASP GLU ASN THR ALA ARG LEU ALA SEQRES 20 A 451 LEU GLU GLN GLY ARG ALA ALA LEU GLU VAL ASN TRP PRO SEQRES 21 A 451 TYR VAL LEU PRO SER LEU LEU GLU ASN ALA ILE LYS GLY SEQRES 22 A 451 GLY VAL GLY PHE LEU PRO LEU ASN GLU ASN PRO ALA LEU SEQRES 23 A 451 ARG GLY SER ILE ASN ASP VAL GLY THR PHE ALA PRO THR SEQRES 24 A 451 ASP GLU GLN PHE ASP LEU ALA LEU ASN ALA SER LYS GLU SEQRES 25 A 451 VAL PHE GLY PHE ALA ARG TYR PRO GLY VAL ARG PRO ASP SEQRES 26 A 451 GLU PRO ALA ARG VAL THR LEU GLY GLY LEU ASN LEU ALA SEQRES 27 A 451 VAL ALA SER THR THR ARG HIS LYS ALA GLU ALA PHE GLU SEQRES 28 A 451 ALA VAL ARG CYS LEU ARG ASN GLU GLU ASN GLN ARG LEU SEQRES 29 A 451 THR SER ILE GLU GLY GLY LEU PRO ALA VAL ARG THR SER SEQRES 30 A 451 LEU TYR ASP ASP PRO GLN PHE GLN ALA LYS TYR PRO GLN SEQRES 31 A 451 TYR GLU ILE ILE ARG ASP GLN LEU ILE ASN ALA ALA VAL SEQRES 32 A 451 ARG PRO ALA THR PRO VAL TYR GLN ALA MET SER THR ARG SEQRES 33 A 451 MET SER ALA THR LEU ALA PRO ILE SER GLN ILE ASP PRO SEQRES 34 A 451 GLU ARG THR ALA ASP GLU LEU ALA GLU GLN VAL GLN GLN SEQRES 35 A 451 ALA ILE ASP GLY LYS GLY LEU ILE PRO SEQRES 1 B 451 MET THR ALA SER THR VAL ALA ALA CYS GLY SER ASP SER SEQRES 2 B 451 GLY GLU ILE VAL ILE SER TYR TYR THR PRO ALA ASN GLU SEQRES 3 B 451 ALA ALA THR PHE THR ALA VAL ALA GLN ARG CYS ASN ALA SEQRES 4 B 451 GLU LEU GLY GLY ARG PHE ARG ILE GLU GLN ARG SER LEU SEQRES 5 B 451 PRO ARG GLU ALA ASP ALA GLN ARG LEU GLN LEU ALA ARG SEQRES 6 B 451 ARG LEU THR GLY ASN ASP ARG SER LEU ASP VAL MET ALA SEQRES 7 B 451 LEU ASP VAL VAL TRP THR ALA GLU PHE ALA GLU ALA GLY SEQRES 8 B 451 TRP ALA LEU PRO LEU SER GLU ASP PRO ALA GLY LEU ALA SEQRES 9 B 451 GLU ALA ASP ALA THR THR ASN THR LEU PRO GLY PRO LEU SEQRES 10 B 451 GLU THR ALA LYS TRP ASN GLY GLU LEU TYR ALA ALA PRO SEQRES 11 B 451 ILE THR THR ASN THR GLN LEU LEU TRP TYR ARG ALA ASP SEQRES 12 B 451 LEU MET ASP GLU PRO PRO ALA THR TRP ASP GLU MET LEU SEQRES 13 B 451 SER GLU ALA ALA ARG LEU HIS ALA GLN GLY GLY PRO SER SEQRES 14 B 451 TRP ILE ALA VAL GLN GLY LYS GLN TYR GLU GLY LEU VAL SEQRES 15 B 451 VAL TRP PHE ASN THR LEU LEU GLU SER ALA GLY GLY GLN SEQRES 16 B 451 VAL LEU SER ASP ASP GLY GLN ARG VAL THR LEU THR ASP SEQRES 17 B 451 THR PRO GLU HIS ARG ALA ALA THR VAL LYS ALA LEU GLU SEQRES 18 B 451 ILE ILE LYS ALA VAL ALA THR ALA PRO GLY ALA ASP PRO SEQRES 19 B 451 SER ILE THR GLN THR ASP GLU ASN THR ALA ARG LEU ALA SEQRES 20 B 451 LEU GLU GLN GLY ARG ALA ALA LEU GLU VAL ASN TRP PRO SEQRES 21 B 451 TYR VAL LEU PRO SER LEU LEU GLU ASN ALA ILE LYS GLY SEQRES 22 B 451 GLY VAL GLY PHE LEU PRO LEU ASN GLU ASN PRO ALA LEU SEQRES 23 B 451 ARG GLY SER ILE ASN ASP VAL GLY THR PHE ALA PRO THR SEQRES 24 B 451 ASP GLU GLN PHE ASP LEU ALA LEU ASN ALA SER LYS GLU SEQRES 25 B 451 VAL PHE GLY PHE ALA ARG TYR PRO GLY VAL ARG PRO ASP SEQRES 26 B 451 GLU PRO ALA ARG VAL THR LEU GLY GLY LEU ASN LEU ALA SEQRES 27 B 451 VAL ALA SER THR THR ARG HIS LYS ALA GLU ALA PHE GLU SEQRES 28 B 451 ALA VAL ARG CYS LEU ARG ASN GLU GLU ASN GLN ARG LEU SEQRES 29 B 451 THR SER ILE GLU GLY GLY LEU PRO ALA VAL ARG THR SER SEQRES 30 B 451 LEU TYR ASP ASP PRO GLN PHE GLN ALA LYS TYR PRO GLN SEQRES 31 B 451 TYR GLU ILE ILE ARG ASP GLN LEU ILE ASN ALA ALA VAL SEQRES 32 B 451 ARG PRO ALA THR PRO VAL TYR GLN ALA MET SER THR ARG SEQRES 33 B 451 MET SER ALA THR LEU ALA PRO ILE SER GLN ILE ASP PRO SEQRES 34 B 451 GLU ARG THR ALA ASP GLU LEU ALA GLU GLN VAL GLN GLN SEQRES 35 B 451 ALA ILE ASP GLY LYS GLY LEU ILE PRO HET GLC C 1 22 HET GLC C 2 23 HET GLC D 1 22 HET GLC D 2 23 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 3 GLC 4(C6 H12 O6) FORMUL 5 HOH *557(H2 O) HELIX 1 AA1 GLU A 26 LEU A 41 1 16 HELIX 2 AA2 GLU A 55 GLY A 69 1 15 HELIX 3 AA3 TRP A 83 ALA A 90 1 8 HELIX 4 AA4 PRO A 95 ASP A 99 5 5 HELIX 5 AA5 LEU A 103 THR A 110 1 8 HELIX 6 AA6 LEU A 113 ALA A 120 1 8 HELIX 7 AA7 THR A 151 GLN A 165 1 15 HELIX 8 AA8 TYR A 178 ALA A 192 1 15 HELIX 9 AA9 THR A 209 THR A 228 1 20 HELIX 10 AB1 SER A 235 THR A 239 5 5 HELIX 11 AB2 ASP A 240 GLN A 250 1 11 HELIX 12 AB3 TYR A 261 LYS A 272 1 12 HELIX 13 AB4 PRO A 279 ARG A 287 5 9 HELIX 14 AB5 THR A 299 LYS A 311 1 13 HELIX 15 AB6 HIS A 345 ARG A 357 1 13 HELIX 16 AB7 ASN A 358 GLY A 370 1 13 HELIX 17 AB8 ARG A 375 ASP A 380 5 6 HELIX 18 AB9 ASP A 381 TYR A 388 1 8 HELIX 19 AC1 GLN A 390 ILE A 399 1 10 HELIX 20 AC2 VAL A 409 ALA A 422 1 14 HELIX 21 AC3 PRO A 423 ILE A 427 5 5 HELIX 22 AC4 ASP A 428 ASP A 445 1 18 HELIX 23 AC5 GLU B 26 LEU B 41 1 16 HELIX 24 AC6 GLU B 55 GLY B 69 1 15 HELIX 25 AC7 TRP B 83 ALA B 90 1 8 HELIX 26 AC8 PRO B 95 ASP B 99 5 5 HELIX 27 AC9 LEU B 103 THR B 110 1 8 HELIX 28 AD1 LEU B 113 ALA B 120 1 8 HELIX 29 AD2 THR B 151 GLN B 165 1 15 HELIX 30 AD3 TYR B 178 ALA B 192 1 15 HELIX 31 AD4 THR B 209 THR B 228 1 20 HELIX 32 AD5 SER B 235 THR B 239 5 5 HELIX 33 AD6 ASP B 240 GLN B 250 1 11 HELIX 34 AD7 TYR B 261 LYS B 272 1 12 HELIX 35 AD8 PRO B 279 ASN B 283 5 5 HELIX 36 AD9 THR B 299 LYS B 311 1 13 HELIX 37 AE1 HIS B 345 ARG B 357 1 13 HELIX 38 AE2 ASN B 358 GLY B 370 1 13 HELIX 39 AE3 ARG B 375 ASP B 380 5 6 HELIX 40 AE4 ASP B 381 TYR B 388 1 8 HELIX 41 AE5 GLN B 390 ILE B 399 1 10 HELIX 42 AE6 VAL B 409 ALA B 422 1 14 HELIX 43 AE7 PRO B 423 ILE B 427 5 5 HELIX 44 AE8 ASP B 428 GLY B 446 1 19 SHEET 1 AA1 5 PHE A 45 LEU A 52 0 SHEET 2 AA1 5 ILE A 16 PRO A 23 1 N ILE A 18 O ARG A 46 SHEET 3 AA1 5 VAL A 76 ASP A 80 1 O ALA A 78 N TYR A 21 SHEET 4 AA1 5 GLY A 333 VAL A 339 -1 O ASN A 336 N LEU A 79 SHEET 5 AA1 5 ALA A 129 ASN A 134 -1 N ALA A 129 O LEU A 337 SHEET 1 AA2 2 LYS A 121 TRP A 122 0 SHEET 2 AA2 2 GLU A 125 LEU A 126 -1 O GLU A 125 N TRP A 122 SHEET 1 AA3 4 TRP A 170 ALA A 172 0 SHEET 2 AA3 4 ALA A 253 ASN A 258 1 O LEU A 255 N ALA A 172 SHEET 3 AA3 4 LEU A 137 TYR A 140 -1 N TRP A 139 O GLU A 256 SHEET 4 AA3 4 GLY A 315 ALA A 317 -1 O ALA A 317 N LEU A 138 SHEET 1 AA4 5 ARG B 46 LEU B 52 0 SHEET 2 AA4 5 VAL B 17 PRO B 23 1 N ILE B 18 O ARG B 46 SHEET 3 AA4 5 VAL B 76 ASP B 80 1 O VAL B 76 N TYR B 21 SHEET 4 AA4 5 GLY B 333 VAL B 339 -1 O ASN B 336 N LEU B 79 SHEET 5 AA4 5 ALA B 129 ASN B 134 -1 N ALA B 129 O LEU B 337 SHEET 1 AA5 2 LYS B 121 TRP B 122 0 SHEET 2 AA5 2 GLU B 125 LEU B 126 -1 O GLU B 125 N TRP B 122 SHEET 1 AA6 4 TRP B 170 ALA B 172 0 SHEET 2 AA6 4 ALA B 253 ASN B 258 1 O LEU B 255 N ALA B 172 SHEET 3 AA6 4 LEU B 137 TYR B 140 -1 N TRP B 139 O GLU B 256 SHEET 4 AA6 4 GLY B 315 ALA B 317 -1 O ALA B 317 N LEU B 138 SSBOND 1 CYS A 37 CYS A 355 1555 1555 2.13 SSBOND 2 CYS B 37 CYS B 355 1555 1555 2.13 LINK C1 GLC C 1 O1 GLC C 2 1555 1555 1.38 LINK C1 GLC D 1 O1 GLC D 2 1555 1555 1.37 CISPEP 1 ALA A 422 PRO A 423 0 -4.11 CISPEP 2 ALA B 422 PRO B 423 0 -2.87 CRYST1 92.361 92.361 216.577 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010827 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010827 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004617 0.00000