HEADER TRANSFERASE 18-OCT-20 7APL TITLE TRNA-GUANINE TRANSGLYCOSYLASE G87C MUTANT SPIN-LABELED WITH MTSL COMPND MOL_ID: 1; COMPND 2 MOLECULE: QUEUINE TRNA-RIBOSYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GUANINE INSERTION ENZYME,TRNA-GUANINE TRANSGLYCOSYLASE; COMPND 5 EC: 2.4.2.29; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZYMOMONAS MOBILIS SUBSP. MOBILIS (STRAIN ATCC SOURCE 3 31821 / ZM4 / CP4); SOURCE 4 ORGANISM_TAXID: 264203; SOURCE 5 STRAIN: ATCC 31821 / ZM4 / CP4; SOURCE 6 GENE: TGT, ZMO0363; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PPR-IBA2 KEYWDS ENZYME, SPIN LABEL, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.NGUYEN,A.HEINE,G.KLEBE REVDAT 4 31-JAN-24 7APL 1 REMARK REVDAT 3 20-OCT-21 7APL 1 JRNL REVDAT 2 06-OCT-21 7APL 1 JRNL REVDAT 1 28-OCT-20 7APL 0 JRNL AUTH D.NGUYEN,D.ABDULLIN,C.A.HEUBACH,T.PFAFFENEDER,A.NGUYEN, JRNL AUTH 2 A.HEINE,K.REUTER,F.DIEDERICH,O.SCHIEMANN,G.KLEBE JRNL TITL UNRAVELING A LIGAND-INDUCED TWIST OF A HOMODIMERIC ENZYME BY JRNL TITL 2 PULSED ELECTRON-ELECTRON DOUBLE RESONANCE. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 60 23419 2021 JRNL REFN ESSN 1521-3773 JRNL PMID 34387025 JRNL DOI 10.1002/ANIE.202108179 REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 33624 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1682 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 4.5500 - 3.6100 0.99 2746 144 0.1529 0.1762 REMARK 3 2 3.6100 - 3.1600 0.99 2701 142 0.1710 0.2045 REMARK 3 3 3.1600 - 2.8700 0.99 2721 144 0.1742 0.1940 REMARK 3 4 2.8700 - 2.6600 0.94 2525 132 0.1776 0.2366 REMARK 3 5 2.6600 - 2.5100 0.99 2680 141 0.1822 0.2076 REMARK 3 6 2.5100 - 2.3800 0.99 2666 141 0.1718 0.2435 REMARK 3 7 2.3800 - 2.2800 0.99 2650 139 0.1696 0.2379 REMARK 3 8 2.2800 - 2.1900 0.98 2643 139 0.1813 0.2127 REMARK 3 9 2.1900 - 2.1100 0.99 2672 141 0.1918 0.2611 REMARK 3 10 2.1100 - 2.0500 0.98 2616 138 0.1922 0.2449 REMARK 3 11 2.0500 - 1.9900 0.97 2586 136 0.2042 0.2656 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.192 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.345 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.84 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2993 REMARK 3 ANGLE : 0.796 4053 REMARK 3 CHIRALITY : 0.048 430 REMARK 3 PLANARITY : 0.005 544 REMARK 3 DIHEDRAL : 17.623 1802 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 10 THROUGH 70 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.1950 13.4854 16.9990 REMARK 3 T TENSOR REMARK 3 T11: 0.2567 T22: 0.2798 REMARK 3 T33: 0.2586 T12: -0.0713 REMARK 3 T13: 0.0319 T23: -0.0132 REMARK 3 L TENSOR REMARK 3 L11: 0.1624 L22: 0.2057 REMARK 3 L33: 0.2394 L12: 0.0490 REMARK 3 L13: -0.1098 L23: -0.1342 REMARK 3 S TENSOR REMARK 3 S11: 0.1402 S12: -0.1955 S13: -0.0225 REMARK 3 S21: 0.1216 S22: -0.0887 S23: -0.0001 REMARK 3 S31: 0.0164 S32: 0.0256 S33: 0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 71 THROUGH 147 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.9708 2.5727 24.0898 REMARK 3 T TENSOR REMARK 3 T11: 0.4227 T22: 0.4638 REMARK 3 T33: 0.3778 T12: -0.1662 REMARK 3 T13: 0.1453 T23: -0.0512 REMARK 3 L TENSOR REMARK 3 L11: 0.1683 L22: 0.2645 REMARK 3 L33: 0.4004 L12: -0.1294 REMARK 3 L13: 0.0686 L23: 0.0273 REMARK 3 S TENSOR REMARK 3 S11: 0.3040 S12: -0.3742 S13: 0.0844 REMARK 3 S21: 0.4196 S22: -0.2990 S23: 0.2234 REMARK 3 S31: 0.1909 S32: -0.1627 S33: 0.1458 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 148 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.0344 15.8745 32.0839 REMARK 3 T TENSOR REMARK 3 T11: 0.5184 T22: 0.6742 REMARK 3 T33: 0.3694 T12: -0.0991 REMARK 3 T13: 0.2779 T23: -0.0601 REMARK 3 L TENSOR REMARK 3 L11: 0.0586 L22: 0.5006 REMARK 3 L33: 0.3493 L12: 0.1635 REMARK 3 L13: 0.1104 L23: 0.4083 REMARK 3 S TENSOR REMARK 3 S11: 0.2717 S12: -0.2564 S13: 0.1765 REMARK 3 S21: 0.5368 S22: -0.1669 S23: 0.2229 REMARK 3 S31: 0.1454 S32: -0.4454 S33: 0.1616 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 189 THROUGH 274 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.7935 23.5470 24.8789 REMARK 3 T TENSOR REMARK 3 T11: 0.4356 T22: 0.4248 REMARK 3 T33: 0.4013 T12: -0.0591 REMARK 3 T13: 0.1494 T23: -0.0815 REMARK 3 L TENSOR REMARK 3 L11: 0.4479 L22: 0.3523 REMARK 3 L33: 0.3112 L12: 0.2939 REMARK 3 L13: -0.3189 L23: -0.1166 REMARK 3 S TENSOR REMARK 3 S11: 0.2002 S12: -0.3048 S13: 0.3453 REMARK 3 S21: 0.3556 S22: 0.0154 S23: 0.3212 REMARK 3 S31: -0.1800 S32: -0.2980 S33: 0.0020 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 275 THROUGH 304 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.7650 17.1556 3.2715 REMARK 3 T TENSOR REMARK 3 T11: 0.2913 T22: 0.2871 REMARK 3 T33: 0.3666 T12: 0.0253 REMARK 3 T13: 0.0123 T23: -0.0187 REMARK 3 L TENSOR REMARK 3 L11: 0.0438 L22: 0.0572 REMARK 3 L33: 0.0595 L12: -0.0405 REMARK 3 L13: -0.0336 L23: 0.0601 REMARK 3 S TENSOR REMARK 3 S11: 0.0970 S12: -0.0224 S13: 0.2219 REMARK 3 S21: -0.0618 S22: -0.1165 S23: 0.2784 REMARK 3 S31: -0.3340 S32: -0.1168 S33: -0.0001 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 305 THROUGH 366 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.3625 14.0814 -3.8208 REMARK 3 T TENSOR REMARK 3 T11: 0.3009 T22: 0.2554 REMARK 3 T33: 0.3258 T12: 0.0185 REMARK 3 T13: 0.0228 T23: 0.0356 REMARK 3 L TENSOR REMARK 3 L11: 0.2212 L22: 0.2176 REMARK 3 L33: 0.1365 L12: -0.0919 REMARK 3 L13: -0.1714 L23: 0.0713 REMARK 3 S TENSOR REMARK 3 S11: 0.0674 S12: 0.0747 S13: 0.1705 REMARK 3 S21: -0.1679 S22: -0.0765 S23: 0.0528 REMARK 3 S31: -0.1913 S32: 0.0326 S33: 0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 367 THROUGH 384 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.8832 31.7284 3.7542 REMARK 3 T TENSOR REMARK 3 T11: 0.4476 T22: 0.2513 REMARK 3 T33: 0.4540 T12: -0.0032 REMARK 3 T13: 0.0391 T23: 0.0268 REMARK 3 L TENSOR REMARK 3 L11: 0.0064 L22: 0.0063 REMARK 3 L33: 0.0424 L12: 0.0036 REMARK 3 L13: 0.0189 L23: 0.0104 REMARK 3 S TENSOR REMARK 3 S11: 0.0378 S12: -0.0373 S13: 0.3683 REMARK 3 S21: -0.2354 S22: 0.0237 S23: -0.0120 REMARK 3 S31: -0.3137 S32: -0.0317 S33: -0.0002 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7APL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-OCT-20. REMARK 100 THE DEPOSITION ID IS D_1292111057. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35628 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 44.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06300 REMARK 200 FOR THE DATA SET : 15.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.49800 REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1P0D REMARK 200 REMARK 200 REMARK: RHOMBOHEDRAL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS, PH 8.5, 7% PEG 8000, 10% REMARK 280 DMSO, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 83.90900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 83.90900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 32.27100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.47350 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 32.27100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.47350 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 83.90900 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 32.27100 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 45.47350 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 83.90900 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 32.27100 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 45.47350 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 GLU A 3 REMARK 465 ALA A 4 REMARK 465 THR A 5 REMARK 465 ALA A 6 REMARK 465 GLN A 7 REMARK 465 GLU A 8 REMARK 465 THR A 9 REMARK 465 THR A 115 REMARK 465 ASN A 385 REMARK 465 SER A 386 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 10 CG OD1 OD2 REMARK 470 ARG A 11 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 33 NZ REMARK 470 LYS A 85 CE NZ REMARK 470 R1A A 87 CE C3 C2 C9 C8 C4 C5 REMARK 470 R1A A 87 C7 C6 N1 O1 REMARK 470 SER A 113 OG REMARK 470 LEU A 114 CG CD1 CD2 REMARK 470 LYS A 116 CG CD CE NZ REMARK 470 GLN A 117 CG CD OE1 NE2 REMARK 470 GLU A 120 CD OE1 OE2 REMARK 470 LYS A 125 CD CE NZ REMARK 470 ARG A 132 CG CD NE CZ NH1 NH2 REMARK 470 THR A 159 OG1 CG2 REMARK 470 SER A 166 OG REMARK 470 ARG A 167 CG CD NE CZ NH1 NH2 REMARK 470 SER A 170 OG REMARK 470 SER A 171 OG REMARK 470 LYS A 190 CD CE NZ REMARK 470 GLU A 191 CG CD OE1 OE2 REMARK 470 VAL A 206 CG1 CG2 REMARK 470 LEU A 210 CG CD1 CD2 REMARK 470 GLN A 213 CG CD OE1 NE2 REMARK 470 GLU A 220 CG CD OE1 OE2 REMARK 470 GLU A 239 OE1 OE2 REMARK 470 ARG A 242 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 255 NZ REMARK 470 LYS A 264 CE NZ REMARK 470 HIS A 319 ND1 CD2 CE1 NE2 REMARK 470 GLN A 324 CD OE1 NE2 REMARK 470 LYS A 325 NZ REMARK 470 ARG A 384 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 14 113.33 -167.72 REMARK 500 THR A 47 -89.70 -8.88 REMARK 500 ALA A 48 57.63 -101.44 REMARK 500 R1A A 87 17.62 83.75 REMARK 500 ASP A 102 158.83 -45.67 REMARK 500 SER A 205 -138.24 54.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 318 SG REMARK 620 2 CYS A 320 SG 106.0 REMARK 620 3 CYS A 323 SG 114.2 116.5 REMARK 620 4 HIS A 349 ND1 103.9 117.3 98.6 REMARK 620 N 1 2 3 DBREF 7APL A 1 386 UNP P28720 TGT_ZYMMO 1 386 SEQADV 7APL GLY A -1 UNP P28720 EXPRESSION TAG SEQADV 7APL SER A 0 UNP P28720 EXPRESSION TAG SEQADV 7APL R1A A 87 UNP P28720 GLY 87 MODIFIED RESIDUE SEQADV 7APL SER A 158 UNP P28720 CYS 158 ENGINEERED MUTATION SEQADV 7APL SER A 281 UNP P28720 CYS 281 ENGINEERED MUTATION SEQADV 7APL LYS A 312 UNP P28720 THR 312 ENGINEERED MUTATION SEQRES 1 A 388 GLY SER MET VAL GLU ALA THR ALA GLN GLU THR ASP ARG SEQRES 2 A 388 PRO ARG PHE SER PHE SER ILE ALA ALA ARG GLU GLY LYS SEQRES 3 A 388 ALA ARG THR GLY THR ILE GLU MET LYS ARG GLY VAL ILE SEQRES 4 A 388 ARG THR PRO ALA PHE MET PRO VAL GLY THR ALA ALA THR SEQRES 5 A 388 VAL LYS ALA LEU LYS PRO GLU THR VAL ARG ALA THR GLY SEQRES 6 A 388 ALA ASP ILE ILE LEU GLY ASN THR TYR HIS LEU MET LEU SEQRES 7 A 388 ARG PRO GLY ALA GLU ARG ILE ALA LYS LEU R1A GLY LEU SEQRES 8 A 388 HIS SER PHE MET GLY TRP ASP ARG PRO ILE LEU THR ASP SEQRES 9 A 388 SER GLY GLY TYR GLN VAL MET SER LEU SER SER LEU THR SEQRES 10 A 388 LYS GLN SER GLU GLU GLY VAL THR PHE LYS SER HIS LEU SEQRES 11 A 388 ASP GLY SER ARG HIS MET LEU SER PRO GLU ARG SER ILE SEQRES 12 A 388 GLU ILE GLN HIS LEU LEU GLY SER ASP ILE VAL MET ALA SEQRES 13 A 388 PHE ASP GLU SER THR PRO TYR PRO ALA THR PRO SER ARG SEQRES 14 A 388 ALA ALA SER SER MET GLU ARG SER MET ARG TRP ALA LYS SEQRES 15 A 388 ARG SER ARG ASP ALA PHE ASP SER ARG LYS GLU GLN ALA SEQRES 16 A 388 GLU ASN ALA ALA LEU PHE GLY ILE GLN GLN GLY SER VAL SEQRES 17 A 388 PHE GLU ASN LEU ARG GLN GLN SER ALA ASP ALA LEU ALA SEQRES 18 A 388 GLU ILE GLY PHE ASP GLY TYR ALA VAL GLY GLY LEU ALA SEQRES 19 A 388 VAL GLY GLU GLY GLN ASP GLU MET PHE ARG VAL LEU ASP SEQRES 20 A 388 PHE SER VAL PRO MET LEU PRO ASP ASP LYS PRO HIS TYR SEQRES 21 A 388 LEU MET GLY VAL GLY LYS PRO ASP ASP ILE VAL GLY ALA SEQRES 22 A 388 VAL GLU ARG GLY ILE ASP MET PHE ASP SER VAL LEU PRO SEQRES 23 A 388 THR ARG SER GLY ARG ASN GLY GLN ALA PHE THR TRP ASP SEQRES 24 A 388 GLY PRO ILE ASN ILE ARG ASN ALA ARG PHE SER GLU ASP SEQRES 25 A 388 LEU LYS PRO LEU ASP SER GLU CYS HIS CYS ALA VAL CYS SEQRES 26 A 388 GLN LYS TRP SER ARG ALA TYR ILE HIS HIS LEU ILE ARG SEQRES 27 A 388 ALA GLY GLU ILE LEU GLY ALA MET LEU MET THR GLU HIS SEQRES 28 A 388 ASN ILE ALA PHE TYR GLN GLN LEU MET GLN LYS ILE ARG SEQRES 29 A 388 ASP SER ILE SER GLU GLY ARG PHE SER GLN PHE ALA GLN SEQRES 30 A 388 ASP PHE ARG ALA ARG TYR PHE ALA ARG ASN SER HET R1A A 87 7 HET ZN A 401 1 HET GOL A 402 6 HET GOL A 403 6 HETNAM R1A 3-{[(2,2,5,5-TETRAMETHYL-1-OXO-2,5-DIHYDRO-1H- HETNAM 2 R1A PYRROLIUM-3-YL)METHYL]DISULFANYL}-D-ALANINE HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETSYN R1A S-(THIOMETHYL-3-[2,2,5,5-TETRAMETHYL PYRROLINE-1-OXYL]) HETSYN 2 R1A CYSTEINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 R1A C12 H21 N2 O3 S2 1+ FORMUL 2 ZN ZN 2+ FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 HOH *170(H2 O) HELIX 1 AA1 LYS A 55 THR A 62 1 8 HELIX 2 AA2 ASN A 70 ARG A 77 1 8 HELIX 3 AA3 GLY A 79 LEU A 86 1 8 HELIX 4 AA4 GLY A 88 GLY A 94 1 7 HELIX 5 AA5 GLY A 104 SER A 112 1 9 HELIX 6 AA6 SER A 136 GLY A 148 1 13 HELIX 7 AA7 THR A 164 ARG A 189 1 26 HELIX 8 AA8 ARG A 189 ALA A 196 1 8 HELIX 9 AA9 PHE A 207 GLY A 222 1 16 HELIX 10 AB1 GLU A 235 VAL A 248 1 14 HELIX 11 AB2 PRO A 249 LEU A 251 5 3 HELIX 12 AB3 LYS A 264 ARG A 274 1 11 HELIX 13 AB4 VAL A 282 ASN A 290 1 9 HELIX 14 AB5 ASN A 304 SER A 308 5 5 HELIX 15 AB6 CYS A 320 TRP A 326 1 7 HELIX 16 AB7 SER A 327 ALA A 337 1 11 HELIX 17 AB8 GLU A 339 GLU A 367 1 29 HELIX 18 AB9 ARG A 369 PHE A 382 1 14 SHEET 1 AA1 3 PHE A 14 GLU A 22 0 SHEET 2 AA1 3 ALA A 25 MET A 32 -1 O GLU A 31 N SER A 15 SHEET 3 AA1 3 GLY A 35 THR A 39 -1 O ILE A 37 N ILE A 30 SHEET 1 AA2 8 ALA A 41 PRO A 44 0 SHEET 2 AA2 8 MET A 278 SER A 281 1 O PHE A 279 N MET A 43 SHEET 3 AA2 8 HIS A 257 LEU A 259 1 N LEU A 259 O MET A 278 SHEET 4 AA2 8 GLY A 225 VAL A 228 1 N VAL A 228 O TYR A 258 SHEET 5 AA2 8 ALA A 197 GLN A 202 1 N GLN A 202 O ALA A 227 SHEET 6 AA2 8 ILE A 151 MET A 153 1 N VAL A 152 O ALA A 197 SHEET 7 AA2 8 ILE A 99 THR A 101 1 N THR A 101 O ILE A 151 SHEET 8 AA2 8 ILE A 67 GLY A 69 1 N GLY A 69 O LEU A 100 SHEET 1 AA3 2 VAL A 122 LYS A 125 0 SHEET 2 AA3 2 ARG A 132 LEU A 135 -1 O LEU A 135 N VAL A 122 SHEET 1 AA4 2 GLN A 292 ALA A 293 0 SHEET 2 AA4 2 ILE A 300 ASN A 301 -1 O ILE A 300 N ALA A 293 LINK C LEU A 86 N R1A A 87 1555 1555 1.33 LINK C R1A A 87 N GLY A 88 1555 1555 1.33 LINK SG CYS A 318 ZN ZN A 401 1555 1555 2.32 LINK SG CYS A 320 ZN ZN A 401 1555 1555 2.35 LINK SG CYS A 323 ZN ZN A 401 1555 1555 2.32 LINK ND1 HIS A 349 ZN ZN A 401 1555 1555 2.15 CISPEP 1 THR A 39 PRO A 40 0 -1.07 CISPEP 2 ARG A 77 PRO A 78 0 11.07 CISPEP 3 TYR A 161 PRO A 162 0 -5.47 CISPEP 4 VAL A 262 GLY A 263 0 -1.13 CRYST1 64.542 90.947 167.818 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015494 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010995 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005959 0.00000 CONECT 596 604 CONECT 602 603 608 609 CONECT 603 602 604 605 CONECT 604 596 603 CONECT 605 603 606 CONECT 606 605 607 CONECT 607 606 CONECT 608 602 CONECT 609 602 CONECT 2345 2915 CONECT 2363 2915 CONECT 2381 2915 CONECT 2594 2915 CONECT 2915 2345 2363 2381 2594 CONECT 2916 2917 2918 CONECT 2917 2916 CONECT 2918 2916 2919 2920 CONECT 2919 2918 CONECT 2920 2918 2921 CONECT 2921 2920 CONECT 2922 2923 2924 CONECT 2923 2922 CONECT 2924 2922 2925 2926 CONECT 2925 2924 CONECT 2926 2924 2927 CONECT 2927 2926 MASTER 421 0 4 18 15 0 0 6 3015 1 26 30 END