HEADER HYDROLASE 19-OCT-20 7APP TITLE STRUCTURE OF LIPASE TL FROM CAPILLARY GROWN CRYSTAL IN THE PRESENCE OF TITLE 2 AGAROSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIPASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TRIACYLGLYCEROL LIPASE; COMPND 5 EC: 3.1.1.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOMYCES LANUGINOSUS; SOURCE 3 ORGANISM_COMMON: HUMICOLA LANUGINOSA; SOURCE 4 ORGANISM_TAXID: 5541; SOURCE 5 GENE: LIP; SOURCE 6 EXPRESSION_SYSTEM: ASPERGILLUS SP.; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 5065 KEYWDS LIPASE, REINFORCED CROSSLINKED LIPASE CRYSTALS, CLECS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.A.GAVIRA,S.MARTINEZ-RODRIGUEZ,R.FERNANDE-PENAS,C.VERDUGO-ESCAMILLA REVDAT 3 31-JAN-24 7APP 1 REMARK REVDAT 2 13-OCT-21 7APP 1 JRNL REVDAT 1 03-MAR-21 7APP 0 JRNL AUTH R.FERNANDEZ-PENAS,C.VERDUGO-ESCAMILLA,S.MARTINEZ-RODRIGUEZ, JRNL AUTH 2 J.A.GAVIRA JRNL TITL PRODUCTION OF CROSS-LINKED LIPASE CRYSTALS AT A PREPARATIVE JRNL TITL 2 SCALE. JRNL REF CRYST.GROWTH DES. V. 21 1698 2021 JRNL REFN ISSN 1528-7483 JRNL PMID 34602865 JRNL DOI 10.1021/ACS.CGD.0C01608 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 66.42 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 89507 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.128 REMARK 3 R VALUE (WORKING SET) : 0.127 REMARK 3 FREE R VALUE : 0.154 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 4792 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.75 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6589 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.1500 REMARK 3 BIN FREE R VALUE SET COUNT : 360 REMARK 3 BIN FREE R VALUE : 0.1930 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4142 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 76 REMARK 3 SOLVENT ATOMS : 480 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 8.14000 REMARK 3 B22 (A**2) : 8.14000 REMARK 3 B33 (A**2) : -16.28000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.013 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.014 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.034 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.954 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.965 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4869 ; 0.017 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4261 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6675 ; 2.072 ; 1.652 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9916 ; 1.574 ; 1.592 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 646 ; 7.240 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 282 ;32.176 ;21.844 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 740 ;15.021 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;15.763 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 627 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5919 ; 0.014 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1141 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.571 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : -K, -H, -L REMARK 3 TWIN FRACTION : 0.429 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7APP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-OCT-20. REMARK 100 THE DEPOSITION ID IS D_1292111875. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 94343 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 68.930 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 18.40 REMARK 200 R MERGE (I) : 0.15300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 16.40 REMARK 200 R MERGE FOR SHELL (I) : 0.85900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 6HW1 REMARK 200 REMARK 200 REMARK: HEXAGONAL BIPYRAMID REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5.0 M NAFORMATE, 0.1 M TRIS HCL, REMARK 280 AGAROSE 0.2% (W/V), PH 7.0, COUNTER-DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 26.64733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 53.29467 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 39.97100 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 66.61833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 13.32367 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 11 O HOH A 401 1.89 REMARK 500 O HOH B 408 O HOH B 556 1.97 REMARK 500 OD1 ASN A 11 O HOH A 402 2.01 REMARK 500 O HOH B 492 O HOH B 609 2.02 REMARK 500 OG SER A 85 O HOH A 403 2.04 REMARK 500 O HOH A 450 O HOH A 601 2.09 REMARK 500 O6 NAG B 301 O HOH B 401 2.10 REMARK 500 N GLU B 1 O HOH B 402 2.11 REMARK 500 OD1 ASN A 11 O HOH A 402 2.13 REMARK 500 O HOH A 501 O HOH A 549 2.13 REMARK 500 ND2 ASN A 11 O HOH A 404 2.13 REMARK 500 O HOH A 494 O HOH B 605 2.15 REMARK 500 O GLU A 56 O HOH A 405 2.17 REMARK 500 O HOH A 401 O HOH A 402 2.19 REMARK 500 ND2 ASN A 33 O5 NAG A 301 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 608 O HOH B 630 1554 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 195 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 232 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 232 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 PHE B 142 CB - CG - CD1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG B 209 NE - CZ - NH1 ANGL. DEV. = -3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 26 103.38 -51.12 REMARK 500 ASP A 27 52.03 21.41 REMARK 500 CYS A 41 57.72 -143.80 REMARK 500 SER A 146 -128.22 65.96 REMARK 500 THR A 199 -120.48 37.59 REMARK 500 THR A 199 -121.59 37.59 REMARK 500 LYS B 24 89.93 -63.82 REMARK 500 ASN B 25 24.98 -155.09 REMARK 500 ASN B 25 27.81 -158.69 REMARK 500 ASP B 27 31.19 -145.35 REMARK 500 SER B 146 -135.30 69.60 REMARK 500 THR B 199 -114.59 38.99 REMARK 500 THR B 199 -117.81 38.99 REMARK 500 PHE B 262 -0.03 62.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 245 GLY A 246 144.11 REMARK 500 GLY B 245 GLY B 246 148.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 CYS B 36 -11.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 302 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 45 O REMARK 620 2 ALA A 47 O 82.7 REMARK 620 3 HOH A 407 O 85.3 96.5 REMARK 620 4 HOH A 518 O 100.0 91.4 171.1 REMARK 620 5 HOH A 599 O 171.8 93.7 87.8 87.5 REMARK 620 6 HOH A 604 O 91.0 166.3 95.1 77.7 94.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 302 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 45 O REMARK 620 2 ALA B 47 O 80.7 REMARK 620 3 HOH B 430 O 86.1 98.3 REMARK 620 4 HOH B 551 O 98.9 90.4 170.6 REMARK 620 5 HOH B 570 O 176.0 96.3 91.7 83.8 REMARK 620 6 HOH B 592 O 87.7 161.9 94.7 77.7 95.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 303 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN B 188 O REMARK 620 2 GLY B 191 O 91.8 REMARK 620 3 HOH B 535 O 100.1 72.0 REMARK 620 4 HOH B 544 O 91.6 97.7 164.5 REMARK 620 5 HOH B 564 O 168.6 89.6 91.2 76.9 REMARK 620 6 HOH B 602 O 84.7 171.3 100.8 90.3 95.3 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7APN RELATED DB: PDB REMARK 900 SAME PROTEIN AND SPACE GROUP BUT DIFFERENT PRECIPITANT. DBREF 7APP A 1 269 UNP O59952 LIP_THELA 23 291 DBREF 7APP B 1 269 UNP O59952 LIP_THELA 23 291 SEQRES 1 A 269 GLU VAL SER GLN ASP LEU PHE ASN GLN PHE ASN LEU PHE SEQRES 2 A 269 ALA GLN TYR SER ALA ALA ALA TYR CYS GLY LYS ASN ASN SEQRES 3 A 269 ASP ALA PRO ALA GLY THR ASN ILE THR CYS THR GLY ASN SEQRES 4 A 269 ALA CYS PRO GLU VAL GLU LYS ALA ASP ALA THR PHE LEU SEQRES 5 A 269 TYR SER PHE GLU ASP SER GLY VAL GLY ASP VAL THR GLY SEQRES 6 A 269 PHE LEU ALA LEU ASP ASN THR ASN LYS LEU ILE VAL LEU SEQRES 7 A 269 SER PHE ARG GLY SER ARG SER ILE GLU ASN TRP ILE GLY SEQRES 8 A 269 ASN LEU ASN PHE ASP LEU LYS GLU ILE ASN ASP ILE CYS SEQRES 9 A 269 SER GLY CYS ARG GLY HIS ASP GLY PHE THR SER SER TRP SEQRES 10 A 269 ARG SER VAL ALA ASP THR LEU ARG GLN LYS VAL GLU ASP SEQRES 11 A 269 ALA VAL ARG GLU HIS PRO ASP TYR ARG VAL VAL PHE THR SEQRES 12 A 269 GLY HIS SER LEU GLY GLY ALA LEU ALA THR VAL ALA GLY SEQRES 13 A 269 ALA ASP LEU ARG GLY ASN GLY TYR ASP ILE ASP VAL PHE SEQRES 14 A 269 SER TYR GLY ALA PRO ARG VAL GLY ASN ARG ALA PHE ALA SEQRES 15 A 269 GLU PHE LEU THR VAL GLN THR GLY GLY THR LEU TYR ARG SEQRES 16 A 269 ILE THR HIS THR ASN ASP ILE VAL PRO ARG LEU PRO PRO SEQRES 17 A 269 ARG GLU PHE GLY TYR SER HIS SER SER PRO GLU TYR TRP SEQRES 18 A 269 ILE LYS SER GLY THR LEU VAL PRO VAL THR ARG ASN ASP SEQRES 19 A 269 ILE VAL LYS ILE GLU GLY ILE ASP ALA THR GLY GLY ASN SEQRES 20 A 269 ASN GLN PRO ASN ILE PRO ASP ILE PRO ALA HIS LEU TRP SEQRES 21 A 269 TYR PHE GLY LEU ILE GLY THR CYS LEU SEQRES 1 B 269 GLU VAL SER GLN ASP LEU PHE ASN GLN PHE ASN LEU PHE SEQRES 2 B 269 ALA GLN TYR SER ALA ALA ALA TYR CYS GLY LYS ASN ASN SEQRES 3 B 269 ASP ALA PRO ALA GLY THR ASN ILE THR CYS THR GLY ASN SEQRES 4 B 269 ALA CYS PRO GLU VAL GLU LYS ALA ASP ALA THR PHE LEU SEQRES 5 B 269 TYR SER PHE GLU ASP SER GLY VAL GLY ASP VAL THR GLY SEQRES 6 B 269 PHE LEU ALA LEU ASP ASN THR ASN LYS LEU ILE VAL LEU SEQRES 7 B 269 SER PHE ARG GLY SER ARG SER ILE GLU ASN TRP ILE GLY SEQRES 8 B 269 ASN LEU ASN PHE ASP LEU LYS GLU ILE ASN ASP ILE CYS SEQRES 9 B 269 SER GLY CYS ARG GLY HIS ASP GLY PHE THR SER SER TRP SEQRES 10 B 269 ARG SER VAL ALA ASP THR LEU ARG GLN LYS VAL GLU ASP SEQRES 11 B 269 ALA VAL ARG GLU HIS PRO ASP TYR ARG VAL VAL PHE THR SEQRES 12 B 269 GLY HIS SER LEU GLY GLY ALA LEU ALA THR VAL ALA GLY SEQRES 13 B 269 ALA ASP LEU ARG GLY ASN GLY TYR ASP ILE ASP VAL PHE SEQRES 14 B 269 SER TYR GLY ALA PRO ARG VAL GLY ASN ARG ALA PHE ALA SEQRES 15 B 269 GLU PHE LEU THR VAL GLN THR GLY GLY THR LEU TYR ARG SEQRES 16 B 269 ILE THR HIS THR ASN ASP ILE VAL PRO ARG LEU PRO PRO SEQRES 17 B 269 ARG GLU PHE GLY TYR SER HIS SER SER PRO GLU TYR TRP SEQRES 18 B 269 ILE LYS SER GLY THR LEU VAL PRO VAL THR ARG ASN ASP SEQRES 19 B 269 ILE VAL LYS ILE GLU GLY ILE ASP ALA THR GLY GLY ASN SEQRES 20 B 269 ASN GLN PRO ASN ILE PRO ASP ILE PRO ALA HIS LEU TRP SEQRES 21 B 269 TYR PHE GLY LEU ILE GLY THR CYS LEU HET NAG A 301 14 HET NA A 302 1 HET FMT A 303 3 HET FMT A 304 3 HET FMT A 305 3 HET FMT A 306 3 HET FMT A 307 3 HET FMT A 308 3 HET FMT A 309 3 HET FMT A 310 3 HET FMT A 311 3 HET NAG B 301 14 HET NA B 302 1 HET NA B 303 1 HET FMT B 304 3 HET FMT B 305 3 HET FMT B 306 3 HET FMT B 307 3 HET FMT B 308 3 HET FMT B 309 3 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM NA SODIUM ION HETNAM FMT FORMIC ACID HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG 2(C8 H15 N O6) FORMUL 4 NA 3(NA 1+) FORMUL 5 FMT 15(C H2 O2) FORMUL 23 HOH *480(H2 O) HELIX 1 AA1 SER A 3 GLY A 23 1 21 HELIX 2 AA2 CYS A 41 ALA A 47 1 7 HELIX 3 AA3 SER A 85 LEU A 93 1 9 HELIX 4 AA4 ASP A 111 HIS A 135 1 25 HELIX 5 AA5 SER A 146 ARG A 160 1 15 HELIX 6 AA6 ASN A 178 GLN A 188 1 11 HELIX 7 AA7 ILE A 202 LEU A 206 5 5 HELIX 8 AA8 PRO A 208 GLY A 212 5 5 HELIX 9 AA9 THR A 231 ASN A 233 5 3 HELIX 10 AB1 ILE A 255 TRP A 260 5 6 HELIX 11 AB2 SER B 3 GLY B 23 1 21 HELIX 12 AB3 CYS B 41 ALA B 47 1 7 HELIX 13 AB4 SER B 85 ASN B 92 1 8 HELIX 14 AB5 ASP B 111 HIS B 135 1 25 HELIX 15 AB6 SER B 146 ARG B 160 1 15 HELIX 16 AB7 ASN B 178 GLN B 188 1 11 HELIX 17 AB8 ILE B 202 LEU B 206 5 5 HELIX 18 AB9 PRO B 208 GLY B 212 5 5 HELIX 19 AC1 THR B 231 ASN B 233 5 3 HELIX 20 AC2 ILE B 255 TRP B 260 5 6 SHEET 1 AA1 8 ALA A 49 SER A 58 0 SHEET 2 AA1 8 VAL A 63 ASP A 70 -1 O LEU A 67 N LEU A 52 SHEET 3 AA1 8 LEU A 75 PHE A 80 -1 O SER A 79 N PHE A 66 SHEET 4 AA1 8 ARG A 139 HIS A 145 1 O ARG A 139 N ILE A 76 SHEET 5 AA1 8 ILE A 166 TYR A 171 1 O ASP A 167 N PHE A 142 SHEET 6 AA1 8 LEU A 193 HIS A 198 1 O TYR A 194 N VAL A 168 SHEET 7 AA1 8 GLU A 219 ILE A 222 1 O TYR A 220 N ARG A 195 SHEET 8 AA1 8 ILE A 235 ILE A 238 -1 O VAL A 236 N TRP A 221 SHEET 1 AA2 2 LEU A 97 GLU A 99 0 SHEET 2 AA2 2 ARG A 108 HIS A 110 -1 O GLY A 109 N LYS A 98 SHEET 1 AA3 8 ALA B 49 SER B 58 0 SHEET 2 AA3 8 VAL B 63 ASP B 70 -1 O LEU B 67 N TYR B 53 SHEET 3 AA3 8 LEU B 75 PHE B 80 -1 O SER B 79 N PHE B 66 SHEET 4 AA3 8 ARG B 139 HIS B 145 1 O ARG B 139 N ILE B 76 SHEET 5 AA3 8 ILE B 166 TYR B 171 1 O ASP B 167 N PHE B 142 SHEET 6 AA3 8 LEU B 193 HIS B 198 1 O TYR B 194 N VAL B 168 SHEET 7 AA3 8 GLU B 219 ILE B 222 1 O TYR B 220 N ARG B 195 SHEET 8 AA3 8 ILE B 235 ILE B 238 -1 O VAL B 236 N TRP B 221 SHEET 1 AA4 2 LEU B 97 GLU B 99 0 SHEET 2 AA4 2 ARG B 108 HIS B 110 -1 O GLY B 109 N LYS B 98 SSBOND 1 CYS A 22 CYS A 268 1555 1555 2.08 SSBOND 2 CYS A 36 CYS A 41 1555 1555 2.11 SSBOND 3 CYS A 104 CYS A 107 1555 1555 2.04 SSBOND 4 CYS B 22 CYS B 268 1555 1555 2.06 SSBOND 5 CYS B 36 CYS B 41 1555 1555 2.11 SSBOND 6 CYS B 104 CYS B 107 1555 1555 2.14 LINK ND2 ASN A 33 C1 NAG A 301 1555 1555 1.40 LINK ND2 ASN B 33 C1 NAG B 301 1555 1555 1.43 LINK O GLU A 45 NA NA A 302 1555 1555 2.44 LINK O ALA A 47 NA NA A 302 1555 1555 2.38 LINK NA NA A 302 O HOH A 407 1555 1555 2.60 LINK NA NA A 302 O HOH A 518 1555 1555 2.35 LINK NA NA A 302 O HOH A 599 1555 1555 2.39 LINK NA NA A 302 O HOH A 604 1555 1555 2.55 LINK O GLU B 45 NA NA B 302 1555 1555 2.27 LINK O ALA B 47 NA NA B 302 1555 1555 2.42 LINK O GLN B 188 NA NA B 303 1555 1555 2.46 LINK O GLY B 191 NA NA B 303 1555 1555 2.51 LINK NA NA B 302 O HOH B 430 1555 1555 2.34 LINK NA NA B 302 O HOH B 551 1555 1555 2.28 LINK NA NA B 302 O HOH B 570 1555 1555 2.36 LINK NA NA B 302 O HOH B 592 1555 1555 2.55 LINK NA NA B 303 O HOH B 535 1555 1555 2.76 LINK NA NA B 303 O HOH B 544 1555 1555 2.56 LINK NA NA B 303 O HOH B 564 1555 1555 2.23 LINK NA NA B 303 O HOH B 602 1555 1555 2.52 CISPEP 1 LEU A 206 PRO A 207 0 -19.74 CISPEP 2 SER A 217 PRO A 218 0 0.08 CISPEP 3 LEU B 206 PRO B 207 0 -24.05 CISPEP 4 SER B 217 PRO B 218 0 -3.27 CRYST1 137.851 137.851 79.942 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007254 0.004188 0.000000 0.00000 SCALE2 0.000000 0.008376 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012509 0.00000