HEADER MEMBRANE PROTEIN 23-OCT-20 7AQY TITLE CO-CRYSTAL STRUCTURE OF VARIANT SURFACE GLYCOPROTEIN VSG2 IN COMPLEX TITLE 2 WITH NANOBODY VSG2(NB11) COMPND MOL_ID: 1; COMPND 2 MOLECULE: VARIANT SURFACE GLYCOPROTEIN MITAT 1.2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: VSG 221; COMPND 5 OTHER_DETAILS: GLYCOSYLATED AT N289; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: NANOBODY VSG2(NB11); COMPND 8 CHAIN: D, C; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI BRUCEI; SOURCE 3 ORGANISM_TAXID: 5702; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 6 ORGANISM_COMMON: LLAMA; SOURCE 7 ORGANISM_TAXID: 9844; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 EXPRESSION_SYSTEM_VARIANT: WK6 KEYWDS VARIANT SURFACE GLYCOPROTEIN, EPITOPE MAPPING, IMMUNE EVASION, KEYWDS 2 MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.E.STEBBINS,A.HEMPELMANN,M.VANSTRAATEN REVDAT 3 07-FEB-24 7AQY 1 REMARK REVDAT 2 17-MAY-23 7AQY 1 JRNL REMARK REVDAT 1 03-NOV-21 7AQY 0 JRNL AUTH A.HEMPELMANN,L.HARTLEB,M.VAN STRAATEN,H.HASHEMI,J.P.ZEELEN, JRNL AUTH 2 K.BONGERS,F.N.PAPAVASILIOU,M.ENGSTLER,C.E.STEBBINS,N.G.JONES JRNL TITL NANOBODY-MEDIATED MACROMOLECULAR CROWDING INDUCES MEMBRANE JRNL TITL 2 FISSION AND REMODELING IN THE AFRICAN TRYPANOSOME. JRNL REF CELL REP V. 37 09923 2021 JRNL REFN ESSN 2211-1247 JRNL PMID 34731611 JRNL DOI 10.1016/J.CELREP.2021.109923 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.02 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 67193 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.880 REMARK 3 FREE R VALUE TEST SET COUNT : 3281 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 54.0240 - 5.4016 1.00 2992 164 0.1829 0.1973 REMARK 3 2 5.4016 - 4.2880 1.00 2838 157 0.1605 0.1791 REMARK 3 3 4.2880 - 3.7461 1.00 2854 117 0.1607 0.2053 REMARK 3 4 3.7461 - 3.4037 1.00 2842 127 0.1837 0.2101 REMARK 3 5 3.4037 - 3.1597 1.00 2800 142 0.2100 0.2266 REMARK 3 6 3.1597 - 2.9735 1.00 2772 159 0.2163 0.2377 REMARK 3 7 2.9735 - 2.8246 1.00 2795 127 0.2178 0.2475 REMARK 3 8 2.8246 - 2.7016 1.00 2756 162 0.2138 0.2810 REMARK 3 9 2.7016 - 2.5976 1.00 2763 156 0.2289 0.2457 REMARK 3 10 2.5976 - 2.5080 1.00 2745 146 0.2251 0.2639 REMARK 3 11 2.5080 - 2.4295 1.00 2748 149 0.2235 0.3000 REMARK 3 12 2.4295 - 2.3601 1.00 2775 152 0.2313 0.2660 REMARK 3 13 2.3601 - 2.2980 1.00 2772 141 0.2307 0.2858 REMARK 3 14 2.2980 - 2.2419 1.00 2743 154 0.2318 0.2993 REMARK 3 15 2.2419 - 2.1909 1.00 2748 136 0.2405 0.2663 REMARK 3 16 2.1909 - 2.1443 1.00 2762 125 0.2466 0.2687 REMARK 3 17 2.1443 - 2.1014 1.00 2720 152 0.2603 0.2981 REMARK 3 18 2.1014 - 2.0618 1.00 2744 140 0.2640 0.3080 REMARK 3 19 2.0618 - 2.0249 1.00 2766 121 0.2729 0.3178 REMARK 3 20 2.0249 - 1.9906 1.00 2761 124 0.2759 0.3061 REMARK 3 21 1.9906 - 1.9585 1.00 2732 136 0.2981 0.3370 REMARK 3 22 1.9585 - 1.9284 1.00 2729 161 0.3263 0.3854 REMARK 3 23 1.9284 - 1.9000 1.00 2755 133 0.3493 0.3686 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.000 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7AQY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-OCT-20. REMARK 100 THE DEPOSITION ID IS D_1292110201. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUL-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 3.25 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67339 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 54.024 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 10.80 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.7600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 1VSG, 5LHR(CHAINB) REMARK 200 REMARK 200 REMARK: ROD REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M IMIDAZOLE, 19% PEG 1500, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 296.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 41.32200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.25300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.87450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.25300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.32200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.87450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, B, C, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 353 REMARK 465 ASP A 354 REMARK 465 ASN A 355 REMARK 465 GLN A 356 REMARK 465 GLU A 385 REMARK 465 VAL A 386 REMARK 465 LEU A 387 REMARK 465 THR A 388 REMARK 465 GLN A 389 REMARK 465 LYS A 390 REMARK 465 HIS D 128 REMARK 465 HIS D 129 REMARK 465 HIS D 130 REMARK 465 HIS D 131 REMARK 465 HIS D 132 REMARK 465 LYS B 383 REMARK 465 PHE B 384 REMARK 465 GLU B 385 REMARK 465 VAL B 386 REMARK 465 LEU B 387 REMARK 465 THR B 388 REMARK 465 GLN B 389 REMARK 465 LYS B 390 REMARK 465 GLN C 1 REMARK 465 ALA C 40 REMARK 465 PRO C 41 REMARK 465 HIS C 128 REMARK 465 HIS C 129 REMARK 465 HIS C 130 REMARK 465 HIS C 131 REMARK 465 HIS C 132 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 83 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 190 CG CD CE NZ REMARK 470 LYS A 310 CG CD CE NZ REMARK 470 PHE A 384 O REMARK 470 LYS D 65 CG CD CE NZ REMARK 470 LEU D 110 CG CD1 CD2 REMARK 470 HIS D 127 CG ND1 CD2 CE1 NE2 REMARK 470 HIS B 83 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 161 CG CD CE NZ REMARK 470 LYS B 172 CG CD CE NZ REMARK 470 GLN B 179 CG CD OE1 NE2 REMARK 470 LYS B 190 CG CD CE NZ REMARK 470 ARG B 198 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 209 CG OD1 ND2 REMARK 470 LYS B 311 CG CD CE NZ REMARK 470 LYS B 312 CG CD CE NZ REMARK 470 GLN C 3 CG CD OE1 NE2 REMARK 470 GLN C 39 CG CD OE1 NE2 REMARK 470 LYS C 43 CG CD CE NZ REMARK 470 ARG C 45 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 46 CG CD OE1 OE2 REMARK 470 LYS C 65 CG CD CE NZ REMARK 470 LYS C 76 CG CD CE NZ REMARK 470 ARG C 105 CG CD NE CZ NH1 NH2 REMARK 470 LEU C 110 CG CD1 CD2 REMARK 470 GLN C 118 CG CD OE1 NE2 REMARK 470 HIS C 127 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 573 O HOH B 601 1.89 REMARK 500 NZ LYS A 383 O HOH A 401 1.92 REMARK 500 O HOH B 565 O HOH B 605 1.99 REMARK 500 O HOH B 559 O HOH B 603 1.99 REMARK 500 O HOH B 404 O HOH B 557 2.06 REMARK 500 O HOH A 515 O HOH B 551 2.06 REMARK 500 NE2 GLN A 349 O HOH A 402 2.07 REMARK 500 O HOH A 513 O HOH A 587 2.14 REMARK 500 ND2 ASN B 289 O5 NAG F 1 2.14 REMARK 500 O HOH B 586 O HOH B 588 2.17 REMARK 500 ND2 ASN A 289 O5 NAG E 1 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG1 THR A 186 OE1 GLU A 379 2554 2.15 REMARK 500 O HOH A 610 O HOH C 250 4555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 83 118.49 -33.40 REMARK 500 THR A 112 -53.08 -124.77 REMARK 500 ASP A 152 -166.91 -75.49 REMARK 500 CYS A 171 73.54 -169.22 REMARK 500 ASP A 201 74.35 -155.37 REMARK 500 CYS A 213 109.22 -164.58 REMARK 500 LYS A 226 -77.81 -98.79 REMARK 500 ALA A 257 58.32 -142.77 REMARK 500 ALA A 292 -159.83 -99.44 REMARK 500 VAL D 48 -61.77 -108.50 REMARK 500 SER D 103 12.60 -145.27 REMARK 500 SER D 126 37.92 -90.36 REMARK 500 THR B 112 -53.71 -131.29 REMARK 500 CYS B 171 76.01 -160.34 REMARK 500 THR B 186 -59.83 -126.20 REMARK 500 LEU B 196 69.30 -101.41 REMARK 500 ASP B 201 83.79 -153.08 REMARK 500 CYS B 213 107.78 -160.42 REMARK 500 LYS B 226 -75.51 -99.72 REMARK 500 ASP B 354 -57.75 -124.58 REMARK 500 SER C 103 17.31 -151.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 655 DISTANCE = 6.11 ANGSTROMS REMARK 525 HOH A 656 DISTANCE = 6.20 ANGSTROMS DBREF 7AQY A 27 390 UNP P26332 VSM2_TRYBB 27 390 DBREF 7AQY D 1 132 PDB 7AQY 7AQY 1 132 DBREF 7AQY B 27 390 UNP P26332 VSM2_TRYBB 27 390 DBREF 7AQY C 1 132 PDB 7AQY 7AQY 1 132 SEQRES 1 A 364 ALA ALA GLU LYS GLY PHE LYS GLN ALA PHE TRP GLN PRO SEQRES 2 A 364 LEU CYS GLN VAL SER GLU GLU LEU ASP ASP GLN PRO LYS SEQRES 3 A 364 GLY ALA LEU PHE THR LEU GLN ALA ALA ALA SER LYS ILE SEQRES 4 A 364 GLN LYS MET ARG ASP ALA ALA LEU ARG ALA SER ILE TYR SEQRES 5 A 364 ALA GLU ILE ASN HIS GLY THR ASN ARG ALA LYS ALA ALA SEQRES 6 A 364 VAL ILE VAL ALA ASN HIS TYR ALA MET LYS ALA ASP SER SEQRES 7 A 364 GLY LEU GLU ALA LEU LYS GLN THR LEU SER SER GLN GLU SEQRES 8 A 364 VAL THR ALA THR ALA THR ALA SER TYR LEU LYS GLY ARG SEQRES 9 A 364 ILE ASP GLU TYR LEU ASN LEU LEU LEU GLN THR LYS GLU SEQRES 10 A 364 SER GLY THR SER GLY CYS MET MET ASP THR SER GLY THR SEQRES 11 A 364 ASN THR VAL THR LYS ALA GLY GLY THR ILE GLY GLY VAL SEQRES 12 A 364 PRO CYS LYS LEU GLN LEU SER PRO ILE GLN PRO LYS ARG SEQRES 13 A 364 PRO ALA ALA THR TYR LEU GLY LYS ALA GLY TYR VAL GLY SEQRES 14 A 364 LEU THR ARG GLN ALA ASP ALA ALA ASN ASN PHE HIS ASP SEQRES 15 A 364 ASN ASP ALA GLU CYS ARG LEU ALA SER GLY HIS ASN THR SEQRES 16 A 364 ASN GLY LEU GLY LYS SER GLY GLN LEU SER ALA ALA VAL SEQRES 17 A 364 THR MET ALA ALA GLY TYR VAL THR VAL ALA ASN SER GLN SEQRES 18 A 364 THR ALA VAL THR VAL GLN ALA LEU ASP ALA LEU GLN GLU SEQRES 19 A 364 ALA SER GLY ALA ALA HIS GLN PRO TRP ILE ASP ALA TRP SEQRES 20 A 364 LYS ALA LYS LYS ALA LEU THR GLY ALA GLU THR ALA GLU SEQRES 21 A 364 PHE ARG ASN GLU THR ALA GLY ILE ALA GLY LYS THR GLY SEQRES 22 A 364 VAL THR LYS LEU VAL GLU GLU ALA LEU LEU LYS LYS LYS SEQRES 23 A 364 ASP SER GLU ALA SER GLU ILE GLN THR GLU LEU LYS LYS SEQRES 24 A 364 TYR PHE SER GLY HIS GLU ASN GLU GLN TRP THR ALA ILE SEQRES 25 A 364 GLU LYS LEU ILE SER GLU GLN PRO VAL ALA GLN ASN LEU SEQRES 26 A 364 VAL GLY ASP ASN GLN PRO THR LYS LEU GLY GLU LEU GLU SEQRES 27 A 364 GLY ASN ALA LYS LEU THR THR ILE LEU ALA TYR TYR ARG SEQRES 28 A 364 MET GLU THR ALA GLY LYS PHE GLU VAL LEU THR GLN LYS SEQRES 1 D 132 GLN VAL GLN LEU GLN GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 D 132 ALA GLY GLY SER LEU THR LEU SER CYS ALA VAL SER GLY SEQRES 3 D 132 LEU THR PHE SER ASN TYR ALA MET GLY TRP PHE ARG GLN SEQRES 4 D 132 ALA PRO GLY LYS GLU ARG GLU PHE VAL ALA ALA ILE THR SEQRES 5 D 132 TRP ASP GLY GLY ASN THR TYR TYR THR ASP SER VAL LYS SEQRES 6 D 132 GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN THR SEQRES 7 D 132 VAL PHE LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR SEQRES 8 D 132 ALA VAL TYR TYR CYS ALA ALA LYS LEU LEU GLY SER SER SEQRES 9 D 132 ARG TYR GLU LEU ALA LEU ALA GLY TYR ASP TYR TRP GLY SEQRES 10 D 132 GLN GLY THR GLN VAL THR VAL SER SER HIS HIS HIS HIS SEQRES 11 D 132 HIS HIS SEQRES 1 B 364 ALA ALA GLU LYS GLY PHE LYS GLN ALA PHE TRP GLN PRO SEQRES 2 B 364 LEU CYS GLN VAL SER GLU GLU LEU ASP ASP GLN PRO LYS SEQRES 3 B 364 GLY ALA LEU PHE THR LEU GLN ALA ALA ALA SER LYS ILE SEQRES 4 B 364 GLN LYS MET ARG ASP ALA ALA LEU ARG ALA SER ILE TYR SEQRES 5 B 364 ALA GLU ILE ASN HIS GLY THR ASN ARG ALA LYS ALA ALA SEQRES 6 B 364 VAL ILE VAL ALA ASN HIS TYR ALA MET LYS ALA ASP SER SEQRES 7 B 364 GLY LEU GLU ALA LEU LYS GLN THR LEU SER SER GLN GLU SEQRES 8 B 364 VAL THR ALA THR ALA THR ALA SER TYR LEU LYS GLY ARG SEQRES 9 B 364 ILE ASP GLU TYR LEU ASN LEU LEU LEU GLN THR LYS GLU SEQRES 10 B 364 SER GLY THR SER GLY CYS MET MET ASP THR SER GLY THR SEQRES 11 B 364 ASN THR VAL THR LYS ALA GLY GLY THR ILE GLY GLY VAL SEQRES 12 B 364 PRO CYS LYS LEU GLN LEU SER PRO ILE GLN PRO LYS ARG SEQRES 13 B 364 PRO ALA ALA THR TYR LEU GLY LYS ALA GLY TYR VAL GLY SEQRES 14 B 364 LEU THR ARG GLN ALA ASP ALA ALA ASN ASN PHE HIS ASP SEQRES 15 B 364 ASN ASP ALA GLU CYS ARG LEU ALA SER GLY HIS ASN THR SEQRES 16 B 364 ASN GLY LEU GLY LYS SER GLY GLN LEU SER ALA ALA VAL SEQRES 17 B 364 THR MET ALA ALA GLY TYR VAL THR VAL ALA ASN SER GLN SEQRES 18 B 364 THR ALA VAL THR VAL GLN ALA LEU ASP ALA LEU GLN GLU SEQRES 19 B 364 ALA SER GLY ALA ALA HIS GLN PRO TRP ILE ASP ALA TRP SEQRES 20 B 364 LYS ALA LYS LYS ALA LEU THR GLY ALA GLU THR ALA GLU SEQRES 21 B 364 PHE ARG ASN GLU THR ALA GLY ILE ALA GLY LYS THR GLY SEQRES 22 B 364 VAL THR LYS LEU VAL GLU GLU ALA LEU LEU LYS LYS LYS SEQRES 23 B 364 ASP SER GLU ALA SER GLU ILE GLN THR GLU LEU LYS LYS SEQRES 24 B 364 TYR PHE SER GLY HIS GLU ASN GLU GLN TRP THR ALA ILE SEQRES 25 B 364 GLU LYS LEU ILE SER GLU GLN PRO VAL ALA GLN ASN LEU SEQRES 26 B 364 VAL GLY ASP ASN GLN PRO THR LYS LEU GLY GLU LEU GLU SEQRES 27 B 364 GLY ASN ALA LYS LEU THR THR ILE LEU ALA TYR TYR ARG SEQRES 28 B 364 MET GLU THR ALA GLY LYS PHE GLU VAL LEU THR GLN LYS SEQRES 1 C 132 GLN VAL GLN LEU GLN GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 C 132 ALA GLY GLY SER LEU THR LEU SER CYS ALA VAL SER GLY SEQRES 3 C 132 LEU THR PHE SER ASN TYR ALA MET GLY TRP PHE ARG GLN SEQRES 4 C 132 ALA PRO GLY LYS GLU ARG GLU PHE VAL ALA ALA ILE THR SEQRES 5 C 132 TRP ASP GLY GLY ASN THR TYR TYR THR ASP SER VAL LYS SEQRES 6 C 132 GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN THR SEQRES 7 C 132 VAL PHE LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR SEQRES 8 C 132 ALA VAL TYR TYR CYS ALA ALA LYS LEU LEU GLY SER SER SEQRES 9 C 132 ARG TYR GLU LEU ALA LEU ALA GLY TYR ASP TYR TRP GLY SEQRES 10 C 132 GLN GLY THR GLN VAL THR VAL SER SER HIS HIS HIS HIS SEQRES 11 C 132 HIS HIS HET NAG E 1 14 HET NAG E 2 14 HET BMA E 3 11 HET NAG F 1 14 HET NAG F 2 14 HET BMA F 3 11 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 5 NAG 4(C8 H15 N O6) FORMUL 5 BMA 2(C6 H12 O6) FORMUL 7 HOH *598(H2 O) HELIX 1 AA1 LYS A 33 ASP A 48 1 16 HELIX 2 AA2 ASP A 49 ASN A 82 1 34 HELIX 3 AA3 THR A 85 THR A 112 1 28 HELIX 4 AA4 THR A 112 THR A 141 1 30 HELIX 5 AA5 ASP A 201 PHE A 206 1 6 HELIX 6 AA6 ARG A 214 SER A 217 5 4 HELIX 7 AA7 HIS A 266 ALA A 278 1 13 HELIX 8 AA8 THR A 284 ARG A 288 5 5 HELIX 9 AA9 GLY A 299 LEU A 308 1 10 HELIX 10 AB1 GLU A 315 SER A 328 1 14 HELIX 11 AB2 GLU A 331 GLN A 345 1 15 HELIX 12 AB3 ALA A 348 VAL A 352 5 5 HELIX 13 AB4 LYS A 359 LEU A 363 5 5 HELIX 14 AB5 GLY A 365 PHE A 384 1 20 HELIX 15 AB6 THR D 28 SER D 30 5 3 HELIX 16 AB7 ASP D 62 LYS D 65 5 4 HELIX 17 AB8 ASN D 74 LYS D 76 5 3 HELIX 18 AB9 LYS D 87 THR D 91 5 5 HELIX 19 AC1 SER D 104 ALA D 111 1 8 HELIX 20 AC2 LYS B 33 ASP B 49 1 17 HELIX 21 AC3 ASP B 49 ASN B 82 1 34 HELIX 22 AC4 THR B 85 THR B 112 1 28 HELIX 23 AC5 THR B 112 THR B 141 1 30 HELIX 24 AC6 ASP B 201 PHE B 206 1 6 HELIX 25 AC7 ARG B 214 SER B 217 5 4 HELIX 26 AC8 HIS B 266 ALA B 278 1 13 HELIX 27 AC9 THR B 284 ARG B 288 5 5 HELIX 28 AD1 GLY B 293 LYS B 297 5 5 HELIX 29 AD2 GLY B 299 LEU B 308 1 10 HELIX 30 AD3 GLU B 315 SER B 328 1 14 HELIX 31 AD4 GLU B 331 GLN B 345 1 15 HELIX 32 AD5 ALA B 348 VAL B 352 5 5 HELIX 33 AD6 LYS B 359 LEU B 363 5 5 HELIX 34 AD7 GLY B 365 GLY B 382 1 18 HELIX 35 AD8 THR C 28 SER C 30 5 3 HELIX 36 AD9 ASP C 62 LYS C 65 5 4 HELIX 37 AE1 ASN C 74 LYS C 76 5 3 HELIX 38 AE2 LYS C 87 THR C 91 5 5 HELIX 39 AE3 SER C 104 ALA C 111 1 8 SHEET 1 AA1 2 LYS A 30 PHE A 32 0 SHEET 2 AA1 2 HIS A 207 GLU A 212 -1 O ASP A 208 N GLY A 31 SHEET 1 AA2 2 LYS A 142 SER A 144 0 SHEET 2 AA2 2 SER A 147 GLY A 148 -1 O SER A 147 N GLU A 143 SHEET 1 AA3 3 LYS A 161 ALA A 162 0 SHEET 2 AA3 3 THR A 165 ILE A 166 -1 O THR A 165 N ALA A 162 SHEET 3 AA3 3 VAL A 169 PRO A 170 -1 O VAL A 169 N ILE A 166 SHEET 1 AA4 3 VAL A 234 MET A 236 0 SHEET 2 AA4 3 VAL A 241 VAL A 243 -1 O VAL A 243 N VAL A 234 SHEET 3 AA4 3 THR A 251 VAL A 252 -1 O THR A 251 N THR A 242 SHEET 1 AA5 4 GLN D 3 SER D 7 0 SHEET 2 AA5 4 LEU D 18 SER D 25 -1 O ALA D 23 N GLN D 5 SHEET 3 AA5 4 THR D 78 MET D 83 -1 O MET D 83 N LEU D 18 SHEET 4 AA5 4 PHE D 68 ASP D 73 -1 N SER D 71 O PHE D 80 SHEET 1 AA6 6 GLY D 10 GLN D 13 0 SHEET 2 AA6 6 THR D 120 SER D 125 1 O THR D 123 N GLY D 10 SHEET 3 AA6 6 ALA D 92 LEU D 100 -1 N TYR D 94 O THR D 120 SHEET 4 AA6 6 TYR D 32 GLN D 39 -1 N ALA D 33 O LYS D 99 SHEET 5 AA6 6 GLU D 46 ILE D 51 -1 O ALA D 49 N TRP D 36 SHEET 6 AA6 6 THR D 58 TYR D 60 -1 O TYR D 59 N ALA D 50 SHEET 1 AA7 4 GLY D 10 GLN D 13 0 SHEET 2 AA7 4 THR D 120 SER D 125 1 O THR D 123 N GLY D 10 SHEET 3 AA7 4 ALA D 92 LEU D 100 -1 N TYR D 94 O THR D 120 SHEET 4 AA7 4 TYR D 115 TRP D 116 -1 O TYR D 115 N ALA D 98 SHEET 1 AA8 2 LYS B 30 PHE B 32 0 SHEET 2 AA8 2 HIS B 207 GLU B 212 -1 O ASP B 208 N GLY B 31 SHEET 1 AA9 3 LYS B 161 ALA B 162 0 SHEET 2 AA9 3 THR B 165 ILE B 166 -1 O THR B 165 N ALA B 162 SHEET 3 AA9 3 VAL B 169 PRO B 170 -1 O VAL B 169 N ILE B 166 SHEET 1 AB1 3 VAL B 234 MET B 236 0 SHEET 2 AB1 3 VAL B 241 VAL B 243 -1 O VAL B 243 N VAL B 234 SHEET 3 AB1 3 THR B 251 VAL B 252 -1 O THR B 251 N THR B 242 SHEET 1 AB2 4 GLN C 3 SER C 7 0 SHEET 2 AB2 4 LEU C 18 SER C 25 -1 O SER C 25 N GLN C 3 SHEET 3 AB2 4 THR C 78 MET C 83 -1 O MET C 83 N LEU C 18 SHEET 4 AB2 4 PHE C 68 ASP C 73 -1 N SER C 71 O PHE C 80 SHEET 1 AB3 6 GLY C 10 VAL C 12 0 SHEET 2 AB3 6 THR C 120 VAL C 124 1 O THR C 123 N VAL C 12 SHEET 3 AB3 6 ALA C 92 LEU C 100 -1 N TYR C 94 O THR C 120 SHEET 4 AB3 6 TYR C 32 GLN C 39 -1 N ALA C 33 O LYS C 99 SHEET 5 AB3 6 GLU C 46 ILE C 51 -1 O ALA C 49 N TRP C 36 SHEET 6 AB3 6 THR C 58 TYR C 60 -1 O TYR C 59 N ALA C 50 SHEET 1 AB4 4 GLY C 10 VAL C 12 0 SHEET 2 AB4 4 THR C 120 VAL C 124 1 O THR C 123 N VAL C 12 SHEET 3 AB4 4 ALA C 92 LEU C 100 -1 N TYR C 94 O THR C 120 SHEET 4 AB4 4 TYR C 115 TRP C 116 -1 O TYR C 115 N ALA C 98 SSBOND 1 CYS A 41 CYS A 171 1555 1555 2.04 SSBOND 2 CYS A 149 CYS A 213 1555 1555 2.06 SSBOND 3 CYS D 22 CYS D 96 1555 1555 2.02 SSBOND 4 CYS B 41 CYS B 171 1555 1555 2.04 SSBOND 5 CYS B 149 CYS B 213 1555 1555 2.05 SSBOND 6 CYS C 22 CYS C 96 1555 1555 2.03 LINK ND2 ASN A 289 C1 NAG E 1 1555 1555 1.40 LINK ND2 ASN B 289 C1 NAG F 1 1555 1555 1.39 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.41 LINK O4 NAG E 2 C1 BMA E 3 1555 1555 1.40 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.38 LINK O4 NAG F 2 C1 BMA F 3 1555 1555 1.43 CRYST1 82.644 97.749 104.506 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012100 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010230 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009569 0.00000