HEADER ISOMERASE 28-OCT-20 7ASW TITLE CRYSTAL STRUCTURE OF CHLOROPLASTIC THIOREDOXIN Z DEFINES A NOVEL TYPE- TITLE 2 SPECIFIC TARGET RECOGNITION COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOREDOXIN-RELATED PROTEIN CITRX; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHLAMYDOMONAS REINHARDTII; SOURCE 3 ORGANISM_TAXID: 3055; SOURCE 4 GENE: CITRX, CHLRE_02G142800V5, CHLREDRAFT_195890; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RIBOSE-5-PHOSPHATE, ROSSMANN FOLD, ENZYME, CHLOROPLAST, KEYWDS 2 PHOTOSYNTHESE, CHLAMYDOMONAS, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.LE MOIGNE,L.GURRIERI,P.CROZET,C.H.MARCHAND,M.ZAFFAGNINI,F.SPARLA, AUTHOR 2 S.D.LEMAIRE,J.HENRI REVDAT 3 31-JAN-24 7ASW 1 REMARK REVDAT 2 15-SEP-21 7ASW 1 JRNL REVDAT 1 19-MAY-21 7ASW 0 JRNL AUTH T.LE MOIGNE,L.GURRIERI,P.CROZET,C.H.MARCHAND,M.ZAFFAGNINI, JRNL AUTH 2 F.SPARLA,S.D.LEMAIRE,J.HENRI JRNL TITL CRYSTAL STRUCTURE OF CHLOROPLASTIC THIOREDOXIN Z DEFINES A JRNL TITL 2 TYPE-SPECIFIC TARGET RECOGNITION. JRNL REF PLANT J. V. 107 434 2021 JRNL REFN ESSN 1365-313X JRNL PMID 33930214 JRNL DOI 10.1111/TPJ.15300 REMARK 2 REMARK 2 RESOLUTION. 2.44 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.44 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 5268 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.960 REMARK 3 FREE R VALUE TEST SET COUNT : 525 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 2.6903 - 2.4444 0.98 1169 115 0.2843 0.3357 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.800 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 65.65 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 70.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7ASW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-OCT-20. REMARK 100 THE DEPOSITION ID IS D_1292110927. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JAN-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.983995 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 5268 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.440 REMARK 200 RESOLUTION RANGE LOW (A) : 30.990 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 39.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.4300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.44 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.53 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.040 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6I1C REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.26 MOL.L-1 AMMONIUM SULFATE 0,1 REMARK 280 MOL.L-1 HEPES PH=7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293.1K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.75867 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 20.37933 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 20.37933 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 40.75867 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 35 REMARK 465 GLY A 36 REMARK 465 SER A 37 REMARK 465 SER A 38 REMARK 465 HIS A 39 REMARK 465 HIS A 40 REMARK 465 HIS A 41 REMARK 465 HIS A 42 REMARK 465 HIS A 43 REMARK 465 HIS A 44 REMARK 465 SER A 45 REMARK 465 SER A 46 REMARK 465 GLY A 47 REMARK 465 LEU A 48 REMARK 465 VAL A 49 REMARK 465 PRO A 50 REMARK 465 ARG A 51 REMARK 465 GLY A 52 REMARK 465 SER A 53 REMARK 465 SER A 58 REMARK 465 HIS A 59 REMARK 465 GLY A 60 REMARK 465 GLN A 170 REMARK 465 THR A 171 REMARK 465 PRO A 172 REMARK 465 GLY A 173 REMARK 465 GLN A 174 REMARK 465 PRO A 175 REMARK 465 GLN A 176 REMARK 465 GLN A 177 REMARK 465 PRO A 178 REMARK 465 GLU A 179 REMARK 465 ALA A 180 REMARK 465 PRO A 181 REMARK 465 GLN A 182 REMARK 465 GLN A 183 DBREF 7ASW A 56 183 UNP A8J0Q8 A8J0Q8_CHLRE 56 183 SEQADV 7ASW MET A 35 UNP A8J0Q8 INITIATING METHIONINE SEQADV 7ASW GLY A 36 UNP A8J0Q8 EXPRESSION TAG SEQADV 7ASW SER A 37 UNP A8J0Q8 EXPRESSION TAG SEQADV 7ASW SER A 38 UNP A8J0Q8 EXPRESSION TAG SEQADV 7ASW HIS A 39 UNP A8J0Q8 EXPRESSION TAG SEQADV 7ASW HIS A 40 UNP A8J0Q8 EXPRESSION TAG SEQADV 7ASW HIS A 41 UNP A8J0Q8 EXPRESSION TAG SEQADV 7ASW HIS A 42 UNP A8J0Q8 EXPRESSION TAG SEQADV 7ASW HIS A 43 UNP A8J0Q8 EXPRESSION TAG SEQADV 7ASW HIS A 44 UNP A8J0Q8 EXPRESSION TAG SEQADV 7ASW SER A 45 UNP A8J0Q8 EXPRESSION TAG SEQADV 7ASW SER A 46 UNP A8J0Q8 EXPRESSION TAG SEQADV 7ASW GLY A 47 UNP A8J0Q8 EXPRESSION TAG SEQADV 7ASW LEU A 48 UNP A8J0Q8 EXPRESSION TAG SEQADV 7ASW VAL A 49 UNP A8J0Q8 EXPRESSION TAG SEQADV 7ASW PRO A 50 UNP A8J0Q8 EXPRESSION TAG SEQADV 7ASW ARG A 51 UNP A8J0Q8 EXPRESSION TAG SEQADV 7ASW GLY A 52 UNP A8J0Q8 EXPRESSION TAG SEQADV 7ASW SER A 53 UNP A8J0Q8 EXPRESSION TAG SEQADV 7ASW HIS A 54 UNP A8J0Q8 EXPRESSION TAG SEQADV 7ASW MET A 55 UNP A8J0Q8 EXPRESSION TAG SEQRES 1 A 149 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 149 LEU VAL PRO ARG GLY SER HIS MET VAL ILE SER HIS GLY SEQRES 3 A 149 LYS VAL GLU LYS ILE SER GLY GLU GLN LEU GLU VAL ALA SEQRES 4 A 149 ILE ALA SER ARG ASP THR THR LEU ILE VAL ASP PHE PHE SEQRES 5 A 149 ALA THR TRP CYS GLY PRO CYS LEU LEU LEU ALA ARG GLU SEQRES 6 A 149 LEU GLU GLN VAL ALA GLU GLU MET ASP GLY ARG VAL LYS SEQRES 7 A 149 VAL VAL LYS ILE ASP VAL ASP GLU ASN PRO ASP LEU SER SEQRES 8 A 149 ASN MET LEU ARG ILE GLN GLY LEU PRO THR ILE VAL ILE SEQRES 9 A 149 ILE PRO LYS ASP ALA GLY LYS PRO ALA LEU ARG THR GLU SEQRES 10 A 149 GLY PHE LEU PRO ALA ALA GLN ILE MET GLU ILE VAL GLY SEQRES 11 A 149 GLN ILE GLU ALA GLY GLN THR PRO GLY GLN PRO GLN GLN SEQRES 12 A 149 PRO GLU ALA PRO GLN GLN FORMUL 2 HOH *(H2 O) HELIX 1 AA1 SER A 66 SER A 76 1 11 HELIX 2 AA2 CYS A 90 MET A 107 1 18 HELIX 3 AA3 ASN A 121 LEU A 128 1 8 HELIX 4 AA4 PRO A 155 ALA A 168 1 14 SHEET 1 AA1 5 VAL A 62 LYS A 64 0 SHEET 2 AA1 5 VAL A 111 ASP A 117 1 O LYS A 115 N GLU A 63 SHEET 3 AA1 5 THR A 80 PHE A 86 1 N ASP A 84 O ILE A 116 SHEET 4 AA1 5 THR A 135 ILE A 139 -1 O ILE A 139 N LEU A 81 SHEET 5 AA1 5 LEU A 148 GLU A 151 -1 O LEU A 148 N ILE A 138 CISPEP 1 LEU A 133 PRO A 134 0 -8.32 CRYST1 61.985 61.985 61.138 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016133 0.009314 0.000000 0.00000 SCALE2 0.000000 0.018629 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016356 0.00000