HEADER LIPID BINDING PROTEIN 30-OCT-20 7ATP TITLE 2.0 ANGSTROM STRUCTURE IN COMPLEX WITH CA OF PLANT EXTENDED TITLE 2 SYNAPTOTAGMIN 1, C2A DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SYNAPTOTAGMIN-1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NTMC2T1.1,SYNAPTOTAGMIN A,EXTENDED SYNAPTOTAGMIN 1, C2A COMPND 5 DOMAIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: SYT1, SYTA, AT2G20990, F26H11.25, F5H14.5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS C2 DOMAIN, BETA SANDWICH, LIPID TRANSPORT, CONTACT SITES, LIPID KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.L.BENAVENTE,A.ALBERT REVDAT 3 31-JAN-24 7ATP 1 REMARK REVDAT 2 06-OCT-21 7ATP 1 JRNL REVDAT 1 18-AUG-21 7ATP 0 JRNL AUTH J.L.BENAVENTE,D.SILIQI,L.INFANTES,L.LAGARTERA,A.MILLS, JRNL AUTH 2 F.GAGO,N.RUIZ-LOPEZ,M.A.BOTELLA,M.J.SANCHEZ-BARRENA,A.ALBERT JRNL TITL THE STRUCTURE AND FLEXIBILITY ANALYSIS OF THE ARABIDOPSIS JRNL TITL 2 SYNAPTOTAGMIN 1 REVEAL THE BASIS OF ITS REGULATION AT JRNL TITL 3 MEMBRANE CONTACT SITES. JRNL REF LIFE SCI ALLIANCE V. 4 2021 JRNL REFN ESSN 2575-1077 JRNL PMID 34408000 JRNL DOI 10.26508/LSA.202101152 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.020 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 12019 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1206 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.5900 - 4.3700 1.00 2553 118 0.1528 0.2401 REMARK 3 2 4.3700 - 3.4700 1.00 2485 150 0.1822 0.2374 REMARK 3 3 3.4700 - 3.0300 1.00 2568 144 0.2466 0.3114 REMARK 3 4 3.0300 - 2.7500 1.00 2513 134 0.3141 0.3071 REMARK 3 5 2.7500 - 2.5600 1.00 2541 118 0.2554 0.3454 REMARK 3 6 2.5600 - 2.4000 1.00 2510 158 0.2633 0.2635 REMARK 3 7 2.4000 - 2.2800 1.00 2555 122 0.3151 0.3665 REMARK 3 8 2.2800 - 2.1800 1.00 2549 160 0.3302 0.3223 REMARK 3 9 2.1800 - 2.1000 1.00 2530 102 0.3575 0.3888 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.333 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 39.146 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 55.79 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 92.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 1076 REMARK 3 ANGLE : 0.948 1446 REMARK 3 CHIRALITY : 0.053 159 REMARK 3 PLANARITY : 0.009 182 REMARK 3 DIHEDRAL : 24.900 422 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 257 THROUGH 282 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.4200 1.8524 9.3896 REMARK 3 T TENSOR REMARK 3 T11: 0.4036 T22: 0.7887 REMARK 3 T33: 0.6347 T12: 0.0540 REMARK 3 T13: 0.0929 T23: 0.0160 REMARK 3 L TENSOR REMARK 3 L11: 2.5239 L22: 1.3788 REMARK 3 L33: 1.6810 L12: -1.1409 REMARK 3 L13: 0.5707 L23: -1.0258 REMARK 3 S TENSOR REMARK 3 S11: 0.1073 S12: -0.3296 S13: -0.1632 REMARK 3 S21: 0.3010 S22: 0.4731 S23: 0.3630 REMARK 3 S31: 0.8457 S32: -0.9431 S33: 0.2042 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 283 THROUGH 332 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.9259 8.0968 10.9732 REMARK 3 T TENSOR REMARK 3 T11: 0.4621 T22: 0.6914 REMARK 3 T33: 0.5071 T12: 0.1768 REMARK 3 T13: 0.0401 T23: 0.0407 REMARK 3 L TENSOR REMARK 3 L11: 2.3569 L22: 0.6669 REMARK 3 L33: 2.0395 L12: 0.1905 REMARK 3 L13: 0.3911 L23: 0.2392 REMARK 3 S TENSOR REMARK 3 S11: -0.1905 S12: -0.5676 S13: 0.0572 REMARK 3 S21: 0.1850 S22: 0.4003 S23: 0.1075 REMARK 3 S31: -0.2220 S32: -0.5331 S33: 0.0203 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 333 THROUGH 339 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.0339 3.4041 -5.9438 REMARK 3 T TENSOR REMARK 3 T11: 0.7565 T22: 0.8383 REMARK 3 T33: 0.5332 T12: 0.1431 REMARK 3 T13: -0.0416 T23: 0.0810 REMARK 3 L TENSOR REMARK 3 L11: 0.0732 L22: 0.1064 REMARK 3 L33: 0.1350 L12: 0.0504 REMARK 3 L13: 0.0641 L23: -0.0203 REMARK 3 S TENSOR REMARK 3 S11: 0.0281 S12: 0.5883 S13: 0.5645 REMARK 3 S21: -0.7219 S22: 0.8999 S23: 0.3059 REMARK 3 S31: -1.4348 S32: 0.0043 S33: 0.0038 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 340 THROUGH 357 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.1289 6.8007 16.9675 REMARK 3 T TENSOR REMARK 3 T11: 0.6127 T22: 1.4520 REMARK 3 T33: 0.8764 T12: 0.2062 REMARK 3 T13: 0.1277 T23: 0.0989 REMARK 3 L TENSOR REMARK 3 L11: 0.3581 L22: 1.1950 REMARK 3 L33: 0.6787 L12: 0.4128 REMARK 3 L13: 0.0037 L23: -0.8650 REMARK 3 S TENSOR REMARK 3 S11: 0.1171 S12: -0.7504 S13: -0.3618 REMARK 3 S21: 0.3050 S22: -0.1290 S23: 0.7197 REMARK 3 S31: 0.0735 S32: -1.1631 S33: 0.0542 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 358 THROUGH 394 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.5310 3.4827 14.9260 REMARK 3 T TENSOR REMARK 3 T11: 0.5298 T22: 1.4417 REMARK 3 T33: 0.8530 T12: 0.1738 REMARK 3 T13: 0.2038 T23: -0.0741 REMARK 3 L TENSOR REMARK 3 L11: 0.6032 L22: 0.4074 REMARK 3 L33: 1.6582 L12: -0.4973 REMARK 3 L13: -0.1032 L23: 0.0453 REMARK 3 S TENSOR REMARK 3 S11: -0.0892 S12: -1.5990 S13: -0.3039 REMARK 3 S21: 0.1372 S22: 0.0408 S23: 0.9400 REMARK 3 S31: 0.1915 S32: -2.1533 S33: 0.1667 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7ATP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-OCT-20. REMARK 100 THE DEPOSITION ID IS D_1292112086. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JAN-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12025 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 41.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.71200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6ANK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 % W/V POLYETHYLENE GLYCOL 6,000, REMARK 280 100 MM TRIS PH 8.0 AND 10 MM ZINC CHLORIDE, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.56350 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 19.95525 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 38.55633 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 34.56350 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 19.95525 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 38.55633 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 34.56350 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 19.95525 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 38.55633 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 39.91049 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 77.11267 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 39.91049 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 77.11267 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 39.91049 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 77.11267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA; IN CRYSTAL FORM IN PRESENCE OF ZN OR CD/NI REMARK 350 TOTAL BURIED SURFACE AREA: 4190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -169.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL A 403 LIES ON A SPECIAL POSITION. REMARK 375 ZN ZN A 404 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 253 REMARK 465 ALA A 254 REMARK 465 PHE A 255 REMARK 465 ARG A 256 REMARK 465 ASP A 369 REMARK 465 GLY A 370 REMARK 465 GLY A 371 REMARK 465 GLU A 372 REMARK 465 ASP A 373 REMARK 465 GLY A 374 REMARK 465 GLN A 375 REMARK 465 PRO A 376 REMARK 465 PRO A 377 REMARK 465 GLU A 395 REMARK 465 GLU A 396 REMARK 465 GLU A 397 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 267 -71.41 -85.22 REMARK 500 GLU A 351 32.00 -87.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 275 O REMARK 620 2 ASP A 276 OD1 81.6 REMARK 620 3 ASP A 332 OD2 95.5 83.7 REMARK 620 4 GLU A 334 OE1 151.8 120.6 103.6 REMARK 620 5 GLU A 334 OE2 157.9 79.4 71.3 50.3 REMARK 620 6 GLU A 340 OE2 81.9 158.9 84.9 79.3 113.4 REMARK 620 7 HOH A 507 O 85.8 83.5 166.8 80.2 103.0 108.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 276 OD1 REMARK 620 2 ASP A 276 OD2 55.7 REMARK 620 3 ASP A 282 OD2 126.0 71.9 REMARK 620 4 ASP A 332 OD1 108.0 99.6 91.5 REMARK 620 5 ASP A 332 OD2 70.4 100.0 136.6 46.8 REMARK 620 6 TRP A 333 O 152.1 152.0 80.3 76.9 97.4 REMARK 620 7 GLU A 334 OE2 84.9 139.8 141.9 99.7 69.7 67.3 REMARK 620 8 HOH A 506 O 85.5 83.7 76.1 165.7 146.7 93.6 86.1 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 404 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 303 NE2 REMARK 620 2 HIS A 303 NE2 0.0 REMARK 620 N 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7AS6 RELATED DB: PDB DBREF 7ATP A 253 397 UNP Q9SKR2 SYT1_ARATH 253 397 SEQRES 1 A 145 LYS ALA PHE ARG ARG PRO VAL GLY ILE VAL HIS VAL LYS SEQRES 2 A 145 VAL VAL ARG ALA VAL GLY LEU ARG LYS LYS ASP LEU MET SEQRES 3 A 145 GLY GLY ALA ASP PRO PHE VAL LYS ILE LYS LEU SER GLU SEQRES 4 A 145 ASP LYS ILE PRO SER LYS LYS THR THR VAL LYS HIS LYS SEQRES 5 A 145 ASN LEU ASN PRO GLU TRP ASN GLU GLU PHE LYS PHE SER SEQRES 6 A 145 VAL ARG ASP PRO GLN THR GLN VAL LEU GLU PHE SER VAL SEQRES 7 A 145 TYR ASP TRP GLU GLN VAL GLY ASN PRO GLU LYS MET GLY SEQRES 8 A 145 MET ASN VAL LEU ALA LEU LYS GLU MET VAL PRO ASP GLU SEQRES 9 A 145 HIS LYS ALA PHE THR LEU GLU LEU ARG LYS THR LEU ASP SEQRES 10 A 145 GLY GLY GLU ASP GLY GLN PRO PRO ASP LYS TYR ARG GLY SEQRES 11 A 145 LYS LEU GLU VAL GLU LEU LEU TYR LYS PRO PHE THR GLU SEQRES 12 A 145 GLU GLU HET CA A 401 1 HET CA A 402 1 HET CL A 403 1 HET ZN A 404 1 HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION HETNAM ZN ZINC ION FORMUL 2 CA 2(CA 2+) FORMUL 4 CL CL 1- FORMUL 5 ZN ZN 2+ FORMUL 6 HOH *10(H2 O) SHEET 1 AA1 4 GLU A 309 VAL A 318 0 SHEET 2 AA1 4 GLY A 260 VAL A 270 -1 N VAL A 264 O PHE A 314 SHEET 3 AA1 4 LYS A 383 PRO A 392 -1 O LEU A 389 N HIS A 263 SHEET 4 AA1 4 LYS A 358 GLU A 363 -1 N LEU A 362 O LEU A 384 SHEET 1 AA2 4 LYS A 297 LYS A 298 0 SHEET 2 AA2 4 PRO A 283 LEU A 289 -1 N ILE A 287 O LYS A 297 SHEET 3 AA2 4 VAL A 325 ASP A 332 -1 O GLU A 327 N LYS A 288 SHEET 4 AA2 4 GLU A 340 ALA A 348 -1 O LEU A 347 N LEU A 326 LINK O LYS A 275 CA CA A 402 1555 1555 2.46 LINK OD1 ASP A 276 CA CA A 401 1555 1555 2.49 LINK OD2 ASP A 276 CA CA A 401 1555 1555 2.26 LINK OD1 ASP A 276 CA CA A 402 1555 1555 2.28 LINK OD2 ASP A 282 CA CA A 401 1555 1555 2.40 LINK NE2 HIS A 303 ZN ZN A 404 1555 1555 2.08 LINK NE2 HIS A 303 ZN ZN A 404 1555 2555 2.08 LINK OD1 ASP A 332 CA CA A 401 1555 1555 2.35 LINK OD2 ASP A 332 CA CA A 401 1555 1555 2.97 LINK OD2 ASP A 332 CA CA A 402 1555 1555 2.47 LINK O TRP A 333 CA CA A 401 1555 1555 2.55 LINK OE2 GLU A 334 CA CA A 401 1555 1555 2.35 LINK OE1 GLU A 334 CA CA A 402 1555 1555 2.25 LINK OE2 GLU A 334 CA CA A 402 1555 1555 2.80 LINK OE2 GLU A 340 CA CA A 402 1555 1555 2.23 LINK CA CA A 401 O HOH A 506 1555 1555 2.26 LINK CA CA A 402 O HOH A 507 1555 1555 2.37 CRYST1 69.127 69.127 115.669 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014466 0.008352 0.000000 0.00000 SCALE2 0.000000 0.016704 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008645 0.00000