HEADER PEPTIDE BINDING PROTEIN 30-OCT-20 7ATR TITLE THE CRYSTAL STRUCTURE OF YEJA - AN ABC PEPTIDE TRANSPORTER RECEPTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN YEJA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: CHAIN A IS A CONVENTIONAL PEPTIDE BINDING PROTEIN COMPND 6 COMPONENT OF AN ABC UPTAKE SYSTEM IN BACTERIA. CHAIN B IS A PEPTIDE COMPND 7 DERIVED FROM THIS PROTEIN WHICH IS A FOUND AS A LIGAND IN THIS COMPND 8 PROTEIN.; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: UNCHARACTERIZED PROTEIN YEJA; COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES; COMPND 13 OTHER_DETAILS: CHAIN A IS A CONVENTIONAL PEPTIDE BINDING PROTEIN COMPND 14 COMPONENT OF AN ABC UPTAKE SYSTEM IN BACTERIA. CHAIN B IS A PEPTIDE COMPND 15 DERIVED FROM THIS PROTEIN WHICH IS A FOUND AS A LIGAND IN THIS COMPND 16 PROTEIN. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: YEJA, B2177, JW2165; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 10 ORGANISM_TAXID: 83333; SOURCE 11 STRAIN: K-12; SOURCE 12 GENE: YEJA, B2177, JW2165; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PEPTIDE-UPTAKE ANTIMICROBIAL PEPTIDE ABC TRANSPORTER, PEPTIDE BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.K.ACKROYD,E.J.DODSON,A.J.WILKINSON,G.T.THOMAS REVDAT 2 31-JAN-24 7ATR 1 REMARK REVDAT 1 17-NOV-21 7ATR 0 JRNL AUTH B.K.ACKROYD,E.J.DODSON,A.J.WILKINSON,G.H.THOMAS JRNL TITL THE CRYSTAL STRUCTURE OF YEJA - AN ABC PEPTIDE TRANSPORTER JRNL TITL 2 RECEPTOR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 85.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 101009 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.825 REMARK 3 FREE R VALUE TEST SET COUNT : 4874 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6980 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.89 REMARK 3 BIN R VALUE (WORKING SET) : 0.2370 REMARK 3 BIN FREE R VALUE SET COUNT : 349 REMARK 3 BIN FREE R VALUE : 0.2630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4841 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 407 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.46 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.84600 REMARK 3 B22 (A**2) : -0.53900 REMARK 3 B33 (A**2) : -1.30700 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.072 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.069 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.047 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.318 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.967 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5073 ; 0.013 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4663 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6907 ; 1.827 ; 1.649 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10708 ; 1.455 ; 1.582 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 605 ; 6.791 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 298 ;33.240 ;21.779 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 814 ;12.952 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 39 ;17.618 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 625 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5833 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1309 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 759 ; 0.203 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 42 ; 0.283 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2289 ; 0.173 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 193 ; 0.168 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2402 ; 1.863 ; 1.929 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2401 ; 1.839 ; 1.927 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3013 ; 2.639 ; 2.887 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3014 ; 2.638 ; 2.888 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2671 ; 3.283 ; 2.238 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2672 ; 3.282 ; 2.241 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3894 ; 4.862 ; 3.218 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3895 ; 4.862 ; 3.220 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 7ATR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-NOV-20. REMARK 100 THE DEPOSITION ID IS D_1292109592. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAY-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92819 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AIMLESS 0.7.4 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 101011 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 85.264 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 8.400 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 8.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 85.26 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 7.80 REMARK 200 R MERGE FOR SHELL (I) : 0.03400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 36.90 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 11.7.02 REMARK 200 STARTING MODEL: 4ONY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN: 20 MG.ML-1 IN 20 MM TRIS-HCL, REMARK 280 50 MM NACL, PH 8.0 RESERVOIR SOLUTION: 2% W/V POLYETHYLENE REMARK 280 GLYCOL 20,000, 0.1 M 2-(N-MORPHOLINO)ETHANESULFONIC ACID, PH 6.5 REMARK 280 DROPS: 300 NL (150 NL PROTEIN SOLUTION + 150 NL RESERVOIR REMARK 280 SOLUTION) RESERVOIR: 100 MICROLITRES, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 45.72000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.63350 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 72.69350 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 45.72000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.63350 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 72.69350 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 45.72000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 52.63350 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 72.69350 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 45.72000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 52.63350 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 72.69350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H ASP A 378 O HOH A 701 1.47 REMARK 500 O HOH A 827 O HOH A 1062 1.90 REMARK 500 O HOH A 702 O HOH A 884 1.94 REMARK 500 O HOH A 825 O HOH A 1039 1.95 REMARK 500 N ASP A 378 O HOH A 701 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 86 CD GLU A 86 OE2 -0.089 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 151 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 527 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 18 40.76 -103.63 REMARK 500 LEU A 83 -90.22 -131.00 REMARK 500 SER A 192 -16.15 -147.57 REMARK 500 ASN A 332 11.47 -146.13 REMARK 500 THR A 490 1.72 84.29 REMARK 500 MET A 538 -113.20 -102.12 REMARK 500 ALA A 542 46.94 -90.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 603 DBREF 7ATR A 2 580 UNP P33913 YEJA_ECOLI 20 598 DBREF 7ATR B 1 11 PDB 7ATR 7ATR 1 11 SEQADV 7ATR MET A 1 UNP P33913 INITIATING METHIONINE SEQRES 1 A 580 MET GLN ALA ILE LYS GLU SER TYR ALA PHE ALA VAL LEU SEQRES 2 A 580 GLY GLU PRO ARG TYR ALA PHE ASN PHE ASN HIS PHE ASP SEQRES 3 A 580 TYR VAL ASN PRO ALA ALA PRO LYS GLY GLY GLN ILE THR SEQRES 4 A 580 LEU SER ALA LEU GLY THR PHE ASP ASN PHE ASN ARG TYR SEQRES 5 A 580 ALA LEU ARG GLY ASN PRO GLY ALA ARG THR GLU GLN LEU SEQRES 6 A 580 TYR ASP THR LEU PHE THR THR SER ASP ASP GLU PRO GLY SEQRES 7 A 580 SER TYR TYR PRO LEU ILE ALA GLU SER ALA ARG TYR ALA SEQRES 8 A 580 ASP ASP TYR SER TRP VAL GLU VAL ALA ILE ASN PRO ARG SEQRES 9 A 580 ALA ARG PHE HIS ASP GLY SER PRO ILE THR ALA ARG ASP SEQRES 10 A 580 VAL GLU PHE THR PHE GLN LYS PHE MET THR GLU GLY VAL SEQRES 11 A 580 PRO GLN PHE ARG LEU VAL TYR LYS GLY THR THR VAL LYS SEQRES 12 A 580 ALA ILE ALA PRO LEU THR VAL ARG ILE GLU LEU ALA LYS SEQRES 13 A 580 PRO GLY LYS GLU ASP MET LEU SER LEU PHE SER LEU PRO SEQRES 14 A 580 VAL PHE PRO GLU LYS TYR TRP LYS ASP HIS LYS LEU SER SEQRES 15 A 580 ASP PRO LEU ALA THR PRO PRO LEU ALA SER GLY PRO TYR SEQRES 16 A 580 ARG VAL THR SER TRP LYS MET GLY GLN ASN ILE VAL TYR SEQRES 17 A 580 SER ARG VAL LYS ASP TYR TRP ALA ALA ASN LEU PRO VAL SEQRES 18 A 580 ASN ARG GLY ARG TRP ASN PHE ASP THR ILE ARG TYR ASP SEQRES 19 A 580 TYR TYR LEU ASP ASP ASN VAL ALA PHE GLU ALA PHE LYS SEQRES 20 A 580 ALA GLY ALA PHE ASP LEU ARG MET GLU ASN ASP ALA LYS SEQRES 21 A 580 ASN TRP ALA THR ARG TYR THR GLY LYS ASN PHE ASP LYS SEQRES 22 A 580 LYS TYR ILE ILE LYS ASP GLU GLN LYS ASN GLU SER ALA SEQRES 23 A 580 GLN ASP THR ARG TRP LEU ALA PHE ASN ILE GLN ARG PRO SEQRES 24 A 580 VAL PHE SER ASP ARG ARG VAL ARG GLU ALA ILE THR LEU SEQRES 25 A 580 ALA PHE ASP PHE GLU TRP MET ASN LYS ALA LEU PHE TYR SEQRES 26 A 580 ASN ALA TRP SER ARG THR ASN SER TYR PHE GLN ASN THR SEQRES 27 A 580 GLU TYR ALA ALA ARG ASN TYR PRO ASP ALA ALA GLU LEU SEQRES 28 A 580 VAL LEU LEU ALA PRO MET LYS LYS ASP LEU PRO SER GLU SEQRES 29 A 580 VAL PHE THR GLN ILE TYR GLN PRO PRO VAL SER LYS GLY SEQRES 30 A 580 ASP GLY TYR ASP ARG ASP ASN LEU LEU LYS ALA ASP LYS SEQRES 31 A 580 LEU LEU ASN GLU ALA GLY TRP VAL LEU LYS GLY GLN GLN SEQRES 32 A 580 ARG VAL ASN ALA THR THR GLY GLN PRO LEU SER PHE GLU SEQRES 33 A 580 LEU LEU LEU PRO ALA SER SER ASN SER GLN TRP VAL LEU SEQRES 34 A 580 PRO PHE GLN HIS SER LEU GLN ARG LEU GLY ILE ASN MET SEQRES 35 A 580 ASP ILE ARG LYS VAL ASP ASN SER GLN ILE THR ASN ARG SEQRES 36 A 580 MET ARG SER ARG ASP TYR ASP MET MET PRO ARG VAL TRP SEQRES 37 A 580 ARG ALA MET PRO TRP PRO SER SER ASP LEU GLN ILE SER SEQRES 38 A 580 TRP SER SER GLU TYR ILE ASN SER THR TYR ASN ALA PRO SEQRES 39 A 580 GLY VAL GLN SER PRO VAL ILE ASP SER LEU ILE ASN GLN SEQRES 40 A 580 ILE ILE ALA ALA GLN GLY ASN LYS GLU LYS LEU LEU PRO SEQRES 41 A 580 LEU GLY ARG ALA LEU ASP ARG VAL LEU THR TRP ASN TYR SEQRES 42 A 580 TYR MET LEU PRO MET TRP TYR MET ALA GLU ASP ARG LEU SEQRES 43 A 580 ALA TRP TRP ASP LYS PHE SER GLN PRO ALA VAL ARG PRO SEQRES 44 A 580 ILE TYR SER LEU GLY ILE ASP THR TRP TRP TYR ASP VAL SEQRES 45 A 580 ASN LYS ALA ALA LYS LEU PRO SER SEQRES 1 B 11 LEU GLY GLU PRO ARG TYR ALA PHE ASN PHE ASN HET GOL A 601 14 HET GOL A 602 14 HET GOL A 603 14 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 3(C3 H8 O3) FORMUL 6 HOH *407(H2 O) HELIX 1 AA1 ARG A 61 LEU A 65 5 5 HELIX 2 AA2 THR A 114 GLY A 129 1 16 HELIX 3 AA3 PRO A 131 TYR A 137 1 7 HELIX 4 AA4 GLY A 158 PHE A 166 1 9 HELIX 5 AA5 PRO A 172 LYS A 177 1 6 HELIX 6 AA6 LEU A 219 ARG A 223 5 5 HELIX 7 AA7 ASP A 238 ALA A 248 1 11 HELIX 8 AA8 ASP A 258 ARG A 265 1 8 HELIX 9 AA9 GLY A 268 LYS A 273 1 6 HELIX 10 AB1 ARG A 298 SER A 302 5 5 HELIX 11 AB2 ASP A 303 ALA A 313 1 11 HELIX 12 AB3 ASP A 315 LEU A 323 1 9 HELIX 13 AB4 ASP A 347 ALA A 355 1 9 HELIX 14 AB5 PRO A 356 PRO A 362 5 7 HELIX 15 AB6 SER A 363 GLN A 368 1 6 HELIX 16 AB7 ASP A 381 ALA A 395 1 15 HELIX 17 AB8 TRP A 427 LEU A 438 1 12 HELIX 18 AB9 ASP A 448 ARG A 459 1 12 HELIX 19 AC1 ASP A 477 SER A 483 1 7 HELIX 20 AC2 SER A 484 ILE A 487 5 4 HELIX 21 AC3 SER A 498 ALA A 511 1 14 HELIX 22 AC4 ASN A 514 ASN A 532 1 19 HELIX 23 AC5 GLY A 564 TRP A 568 5 5 HELIX 24 AC6 ASP A 571 ALA A 576 1 6 HELIX 25 AC7 GLY B 2 ALA B 7 1 6 SHEET 1 AA1 5 ILE A 4 SER A 7 0 SHEET 2 AA1 5 ALA A 85 ALA A 91 -1 O ALA A 88 N SER A 7 SHEET 3 AA1 5 TRP A 96 ILE A 101 -1 O GLU A 98 N ARG A 89 SHEET 4 AA1 5 THR A 149 GLU A 153 -1 O VAL A 150 N VAL A 99 SHEET 5 AA1 5 THR A 141 ALA A 146 -1 N LYS A 143 O ARG A 151 SHEET 1 AA2 3 PHE A 10 ALA A 11 0 SHEET 2 AA2 3 SER A 79 PRO A 82 -1 O TYR A 80 N PHE A 10 SHEET 3 AA2 3 PHE A 70 THR A 72 -1 N THR A 71 O TYR A 81 SHEET 1 AA3 4 GLN A 37 LEU A 43 0 SHEET 2 AA3 4 THR A 230 TYR A 236 1 O ARG A 232 N LEU A 40 SHEET 3 AA3 4 ASN A 205 ARG A 210 -1 N TYR A 208 O ILE A 231 SHEET 4 AA3 4 TYR A 195 LYS A 201 -1 N SER A 199 O VAL A 207 SHEET 1 AA4 3 LEU A 253 MET A 255 0 SHEET 2 AA4 3 GLU A 543 TRP A 549 -1 O ALA A 547 N ARG A 254 SHEET 3 AA4 3 ILE A 276 LYS A 282 -1 N ILE A 277 O TRP A 548 SHEET 1 AA5 3 MET A 463 TRP A 468 0 SHEET 2 AA5 3 THR A 289 PHE A 294 -1 N ALA A 293 O MET A 464 SHEET 3 AA5 3 MET A 535 PRO A 537 -1 O LEU A 536 N LEU A 292 SHEET 1 AA6 2 SER A 329 ARG A 330 0 SHEET 2 AA6 2 TRP A 539 TYR A 540 -1 O TYR A 540 N SER A 329 SHEET 1 AA7 2 TRP A 397 LYS A 400 0 SHEET 2 AA7 2 GLN A 403 ASN A 406 -1 O GLN A 403 N LYS A 400 SHEET 1 AA8 2 SER A 414 PRO A 420 0 SHEET 2 AA8 2 ASN A 441 VAL A 447 1 O ASP A 443 N LEU A 417 SHEET 1 AA9 2 PHE A 552 SER A 553 0 SHEET 2 AA9 2 TRP A 569 TYR A 570 -1 O TRP A 569 N SER A 553 SITE 1 AC1 5 ARG A 61 ILE A 231 ASP A 566 HOH A 768 SITE 2 AC1 5 HOH A 779 SITE 1 AC2 8 THR A 141 GLU A 153 GLY A 379 PRO A 430 SITE 2 AC2 8 SER A 434 ARG A 437 HOH A 733 HOH A 745 SITE 1 AC3 8 PHE A 107 HIS A 108 GLY A 110 ASP A 213 SITE 2 AC3 8 TYR A 214 TRP A 215 HOH A 755 HOH A 777 CRYST1 91.440 105.267 145.387 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010936 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009500 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006878 0.00000