HEADER HYDROLASE 03-NOV-20 7AUJ TITLE YEAST DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROLASE DDP1 MUTATION TITLE 2 E80Q IN COMPLEX WITH 1-INSP7 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROLASE DDP1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DIADENOSINE 5',5'''-P1,P6-HEXAPHOSPHATE HYDROLASE,AP6A COMPND 5 HYDROLASE,DIADENOSINE AND DIPHOSPHOINOSITOL POLYPHOSPHATE COMPND 6 PHOSPHOHYDROLASE 1,DIADENOSINE HEXAPHOSPHATE HYDROLASE (AMP-FORMING); COMPND 7 EC: 3.6.1.52,3.6.1.60; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 OTHER_DETAILS: MUTATION E80Q. GGS IS A REST OF PURIFICATION LINKER, COMPND 11 PROTEIN STARTS IN MGK. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C); SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292; SOURCE 6 STRAIN: ATCC 204508 / S288C; SOURCE 7 GENE: DDP1, YOR163W, O3575; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: ROSSETTA2(DE3); SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PET28A(+); SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PKLSLT KEYWDS INOSITOL, PP-INSP, PYROPHOSPHATASE, POLYPHOSPHATE, DIADENOSINE KEYWDS 2 POLYPHOSPHATE, DDP1, NUDIX, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.A.MARQUEZ-MONINO,B.GONZALEZ REVDAT 2 31-JAN-24 7AUJ 1 REMARK REVDAT 1 19-MAY-21 7AUJ 0 JRNL AUTH M.A.MARQUEZ-MONINO,R.ORTEGA-GARCIA,M.L.SHIPTON, JRNL AUTH 2 E.FRANCO-ECHEVARRIA,A.M.RILEY,J.SANZ-APARICIO,B.V.L.POTTER, JRNL AUTH 3 B.GONZALEZ JRNL TITL MULTIPLE SUBSTRATE RECOGNITION BY YEAST DIADENOSINE AND JRNL TITL 2 DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROLASE THROUGH JRNL TITL 3 PHOSPHATE CLAMPING. JRNL REF SCI ADV V. 7 2021 JRNL REFN ESSN 2375-2548 JRNL PMID 33893105 JRNL DOI 10.1126/SCIADV.ABF6744 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 12312 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 632 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 903 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.89 REMARK 3 BIN R VALUE (WORKING SET) : 0.2510 REMARK 3 BIN FREE R VALUE SET COUNT : 47 REMARK 3 BIN FREE R VALUE : 0.3660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1279 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 41 REMARK 3 SOLVENT ATOMS : 38 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 43.23 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.22000 REMARK 3 B22 (A**2) : -0.22000 REMARK 3 B33 (A**2) : 0.73000 REMARK 3 B12 (A**2) : -0.11000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.217 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.190 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.158 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.576 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1364 ; 0.004 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 1283 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1854 ; 1.281 ; 1.673 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2972 ; 1.101 ; 1.598 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 160 ; 6.330 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 77 ;30.750 ;21.688 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 250 ;17.678 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;12.977 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 175 ; 0.050 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1481 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 299 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 20 A 201 REMARK 3 ORIGIN FOR THE GROUP (A): 15.6304 -21.4213 -2.4212 REMARK 3 T TENSOR REMARK 3 T11: 0.3481 T22: 0.2164 REMARK 3 T33: 0.0768 T12: -0.1990 REMARK 3 T13: 0.0424 T23: 0.0159 REMARK 3 L TENSOR REMARK 3 L11: 1.0613 L22: 0.9940 REMARK 3 L33: 1.0367 L12: 0.7985 REMARK 3 L13: 0.7304 L23: 0.1551 REMARK 3 S TENSOR REMARK 3 S11: 0.2765 S12: -0.0406 S13: 0.1440 REMARK 3 S21: 0.3072 S22: -0.2406 S23: 0.1556 REMARK 3 S31: 0.1917 S32: 0.0640 S33: -0.0359 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 7AUJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-NOV-20. REMARK 100 THE DEPOSITION ID IS D_1292111344. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JAN-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979257 REMARK 200 MONOCHROMATOR : SI(111) CHANNEL-CUT, CRYOCOOLED REMARK 200 OPTICS : KB FOCUSING MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13002 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 48.260 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.10 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 13.60 REMARK 200 R MERGE FOR SHELL (I) : 0.55800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 7AUI REMARK 200 REMARK 200 REMARK: CUBE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 3350, 0.1 M SODIUM ACETATE PH REMARK 280 4.5, 0.1 M NACL. PROTEIN BUFFER: 20 MM TRIS PH 8.0, 150 MM NACL, REMARK 280 1 MM DTT, 2 MM 1-INSP7., VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.34200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.17100 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 32.17100 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 64.34200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 334 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 338 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 LYS A 3 REMARK 465 THR A 4 REMARK 465 ALA A 5 REMARK 465 ASP A 6 REMARK 465 ASN A 7 REMARK 465 HIS A 8 REMARK 465 GLY A 9 REMARK 465 PRO A 10 REMARK 465 VAL A 11 REMARK 465 ARG A 12 REMARK 465 SER A 13 REMARK 465 GLU A 14 REMARK 465 THR A 15 REMARK 465 ALA A 16 REMARK 465 ARG A 17 REMARK 465 GLU A 18 REMARK 465 GLY A 19 REMARK 465 PRO A 104 REMARK 465 LYS A 105 REMARK 465 ASP A 106 REMARK 465 TRP A 107 REMARK 465 ASN A 108 REMARK 465 LYS A 109 REMARK 465 ASP A 110 REMARK 465 ILE A 111 REMARK 465 LYS A 112 REMARK 465 ASP A 187 REMARK 465 LYS A 188 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 21 40.12 -92.38 REMARK 500 ARG A 118 -3.36 87.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 63 O REMARK 620 2 GLU A 84 OE1 59.5 REMARK 620 3 O81 A 201 O36 149.7 92.1 REMARK 620 4 O81 A 201 O47 86.2 93.1 84.8 REMARK 620 5 HOH A 327 O 91.8 96.5 102.8 167.5 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7AUI RELATED DB: PDB DBREF 7AUJ A 1 188 UNP Q99321 DDP1_YEAST 1 188 SEQADV 7AUJ GLY A -2 UNP Q99321 EXPRESSION TAG SEQADV 7AUJ GLY A -1 UNP Q99321 EXPRESSION TAG SEQADV 7AUJ SER A 0 UNP Q99321 EXPRESSION TAG SEQADV 7AUJ GLN A 80 UNP Q99321 GLU 80 ENGINEERED MUTATION SEQRES 1 A 191 GLY GLY SER MET GLY LYS THR ALA ASP ASN HIS GLY PRO SEQRES 2 A 191 VAL ARG SER GLU THR ALA ARG GLU GLY ARG GLU ASN GLN SEQRES 3 A 191 VAL TYR SER PRO VAL THR GLY ALA ARG LEU VAL ALA GLY SEQRES 4 A 191 CYS ILE CYS LEU THR PRO ASP LYS LYS GLN VAL LEU MET SEQRES 5 A 191 ILE THR SER SER ALA HIS LYS LYS ARG TRP ILE VAL PRO SEQRES 6 A 191 LYS GLY GLY VAL GLU LYS ASP GLU PRO ASN TYR GLU THR SEQRES 7 A 191 THR ALA GLN ARG GLN THR TRP GLU GLU ALA GLY CYS ILE SEQRES 8 A 191 GLY LYS ILE VAL ALA ASN LEU GLY THR VAL GLU ASP MET SEQRES 9 A 191 ARG PRO PRO LYS ASP TRP ASN LYS ASP ILE LYS GLN PHE SEQRES 10 A 191 GLU ASN SER ARG LYS ASP SER GLU VAL ALA LYS HIS PRO SEQRES 11 A 191 PRO ARG THR GLU PHE HIS PHE TYR GLU LEU GLU ILE GLU SEQRES 12 A 191 ASN LEU LEU ASP LYS PHE PRO GLU CYS HIS LYS ARG HIS SEQRES 13 A 191 ARG LYS LEU TYR SER TYR THR GLU ALA LYS GLN ASN LEU SEQRES 14 A 191 ILE ASP ALA LYS ARG PRO GLU LEU LEU GLU ALA LEU ASN SEQRES 15 A 191 ARG SER ALA ILE ILE LYS ASP ASP LYS HET O81 A 201 40 HET MG A 202 1 HETNAM O81 (1S,2R,3R,4S,5S,6R)-2,3,4,5,6-PENTAKIS(PHOSPHONOOXY) HETNAM 2 O81 CYCLOHEXYL TRIHYDROGEN DIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 2 O81 C6 H19 O27 P7 FORMUL 3 MG MG 2+ FORMUL 4 HOH *38(H2 O) HELIX 1 AA1 ASN A 72 GLY A 86 1 15 HELIX 2 AA2 SER A 158 LYS A 170 1 13 HELIX 3 AA3 ARG A 171 SER A 181 1 11 SHEET 1 AA1 4 LYS A 63 GLY A 65 0 SHEET 2 AA1 4 ARG A 32 LEU A 40 -1 N ALA A 35 O GLY A 64 SHEET 3 AA1 4 THR A 130 LEU A 142 1 O LEU A 137 N LEU A 40 SHEET 4 AA1 4 CYS A 87 GLU A 99 -1 N VAL A 98 O PHE A 132 SHEET 1 AA2 3 TRP A 59 ILE A 60 0 SHEET 2 AA2 3 VAL A 47 THR A 51 -1 N ILE A 50 O ILE A 60 SHEET 3 AA2 3 ARG A 154 TYR A 157 -1 O LYS A 155 N MET A 49 SHEET 1 AA3 2 PHE A 114 ASN A 116 0 SHEET 2 AA3 2 SER A 121 VAL A 123 -1 O GLU A 122 N GLU A 115 LINK O LYS A 63 MG MG A 202 1555 1555 2.89 LINK OE1 GLU A 84 MG MG A 202 1555 1555 2.54 LINK O36 O81 A 201 MG MG A 202 1555 1555 2.94 LINK O47 O81 A 201 MG MG A 202 1555 1555 2.65 LINK MG MG A 202 O HOH A 327 1555 1555 2.24 CRYST1 61.893 61.893 96.513 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016157 0.009328 0.000000 0.00000 SCALE2 0.000000 0.018656 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010361 0.00000