HEADER HYDROLASE 03-NOV-20 7AUU TITLE YEAST DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROLASE DDP1-NOSE TITLE 2 MUTANT IN COMPLEX WITH INSP6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROLASE DDP1, COMPND 3 DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROLASE DDP1; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: DIADENOSINE 5',5'''-P1,P6-HEXAPHOSPHATE HYDROLASE,AP6A COMPND 6 HYDROLASE,DIADENOSINE AND DIPHOSPHOINOSITOL POLYPHOSPHATE COMPND 7 PHOSPHOHYDROLASE 1,DIADENOSINE HEXAPHOSPHATE HYDROLASE (AMP-FORMING), COMPND 8 DIADENOSINE 5',5'''-P1,P6-HEXAPHOSPHATE HYDROLASE,AP6A HYDROLASE, COMPND 9 DIADENOSINE AND DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROLASE 1, COMPND 10 DIADENOSINE HEXAPHOSPHATE HYDROLASE (AMP-FORMING); COMPND 11 EC: 3.6.1.52,3.6.1.60,3.6.1.52,3.6.1.60; COMPND 12 ENGINEERED: YES; COMPND 13 MUTATION: YES; COMPND 14 OTHER_DETAILS: GGS IS A REST OF PURIFICATION LINKER, PROTEIN STARTS COMPND 15 IN MGK. THIS PROTEIN HAS A DELETION IN P104-H126, WHERE IT HAS BEEN COMPND 16 REPLACED BY GGG.,GGS IS A REST OF PURIFICATION LINKER, PROTEIN STARTS COMPND 17 IN MGK. THIS PROTEIN HAS A DELETION IN P104-H126, WHERE IT HAS BEEN COMPND 18 REPLACED BY GGG.,GGS IS A REST OF PURIFICATION LINKER, PROTEIN STARTS COMPND 19 IN MGK. THIS PROTEIN HAS A DELETION IN P104-H126, WHERE IT HAS BEEN COMPND 20 REPLACED BY GGG.,GGS IS A REST OF PURIFICATION LINKER, PROTEIN STARTS COMPND 21 IN MGK. THIS PROTEIN HAS A DELETION IN P104-H126, WHERE IT HAS BEEN COMPND 22 REPLACED BY GGG. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C); SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292; SOURCE 6 STRAIN: ATCC 204508 / S288C; SOURCE 7 GENE: DDP1, YOR163W, O3575; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: ROSSETTA2(DE3); SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PET28A(+); SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PKLSLT KEYWDS INOSITOL, PP-INSP, PYROPHOSPHATASE, POLYPHOSPHATE, DIADENOSINE KEYWDS 2 POLYPHOSPHATE, DDP1, NUDIX, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.A.MARQUEZ-MONINO,B.GONZALEZ REVDAT 2 31-JAN-24 7AUU 1 REMARK REVDAT 1 19-MAY-21 7AUU 0 JRNL AUTH M.A.MARQUEZ-MONINO,R.ORTEGA-GARCIA,M.L.SHIPTON, JRNL AUTH 2 E.FRANCO-ECHEVARRIA,A.M.RILEY,J.SANZ-APARICIO,B.V.L.POTTER, JRNL AUTH 3 B.GONZALEZ JRNL TITL MULTIPLE SUBSTRATE RECOGNITION BY YEAST DIADENOSINE AND JRNL TITL 2 DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROLASE THROUGH JRNL TITL 3 PHOSPHATE CLAMPING. JRNL REF SCI ADV V. 7 2021 JRNL REFN ESSN 2375-2548 JRNL PMID 33893105 JRNL DOI 10.1126/SCIADV.ABF6744 REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.54 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 7535 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 422 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.51 REMARK 3 REFLECTION IN BIN (WORKING SET) : 532 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3270 REMARK 3 BIN FREE R VALUE SET COUNT : 31 REMARK 3 BIN FREE R VALUE : 0.4110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1146 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 15 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 69.36 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 88.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.84000 REMARK 3 B22 (A**2) : -2.84000 REMARK 3 B33 (A**2) : 9.20000 REMARK 3 B12 (A**2) : -1.42000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.339 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.254 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.268 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 27.717 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1206 ; 0.004 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 1137 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1640 ; 1.306 ; 1.675 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2637 ; 1.087 ; 1.584 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 143 ; 6.350 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 62 ;27.833 ;21.935 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 216 ;18.198 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;17.509 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 152 ; 0.047 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1300 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 254 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 22 A 201 REMARK 3 ORIGIN FOR THE GROUP (A): 17.4514 -19.8554 -1.6939 REMARK 3 T TENSOR REMARK 3 T11: 0.3094 T22: 0.3169 REMARK 3 T33: 0.0657 T12: -0.1434 REMARK 3 T13: 0.0020 T23: -0.0044 REMARK 3 L TENSOR REMARK 3 L11: 2.8968 L22: 2.1131 REMARK 3 L33: 1.0304 L12: 1.3450 REMARK 3 L13: 1.0999 L23: -0.1887 REMARK 3 S TENSOR REMARK 3 S11: 0.1036 S12: -0.1320 S13: -0.1578 REMARK 3 S21: 0.1938 S22: -0.1968 S23: -0.3493 REMARK 3 S31: 0.0144 S32: -0.2672 S33: 0.0932 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 7AUU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-NOV-20. REMARK 100 THE DEPOSITION ID IS D_1292111037. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-NOV-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979257 REMARK 200 MONOCHROMATOR : SI(111) CHANNEL-CUT, CRYOCOOLED REMARK 200 OPTICS : KB FOCUSING MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7984 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 46.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.90 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.90 REMARK 200 R MERGE FOR SHELL (I) : 0.62400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 7AUI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, 0.1 M BIS-TRIS PROPANE REMARK 280 PH 6.5, 0.2 M SODIUM NITRATE. PROTEIN:PRECIPITANT RATIO 3:1. REMARK 280 PROTEIN BUFFER: 20 MM TRIS PH 8.0, 150 MM NACL, 1 MM DTT, 10 MM REMARK 280 INSP6., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.64800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.82400 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 30.82400 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 61.64800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 LYS A 3 REMARK 465 THR A 4 REMARK 465 ALA A 5 REMARK 465 ASP A 6 REMARK 465 ASN A 7 REMARK 465 HIS A 8 REMARK 465 GLY A 9 REMARK 465 PRO A 10 REMARK 465 VAL A 11 REMARK 465 ARG A 12 REMARK 465 SER A 13 REMARK 465 GLU A 14 REMARK 465 THR A 15 REMARK 465 ALA A 16 REMARK 465 ARG A 17 REMARK 465 GLU A 18 REMARK 465 GLY A 19 REMARK 465 ARG A 20 REMARK 465 GLU A 21 REMARK 465 ASP A 166 REMARK 465 ASP A 167 REMARK 465 LYS A 168 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 28 -66.62 -98.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 63 O REMARK 620 2 GLU A 84 OE1 77.7 REMARK 620 3 IHP A 201 O32 124.7 152.2 REMARK 620 4 IHP A 201 O23 152.0 90.7 61.8 REMARK 620 5 HOH A 312 O 107.9 100.8 88.2 99.2 REMARK 620 6 HOH A 313 O 76.5 82.6 87.0 76.7 174.8 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7AUI RELATED DB: PDB REMARK 900 RELATED ID: 7AUJ RELATED DB: PDB REMARK 900 RELATED ID: 7AUK RELATED DB: PDB REMARK 900 RELATED ID: 7AUL RELATED DB: PDB REMARK 900 RELATED ID: 7AUM RELATED DB: PDB REMARK 900 RELATED ID: 7AUN RELATED DB: PDB REMARK 900 RELATED ID: 7AUO RELATED DB: PDB REMARK 900 RELATED ID: 7AUP RELATED DB: PDB REMARK 900 RELATED ID: 7AUQ RELATED DB: PDB REMARK 900 RELATED ID: 7AUR RELATED DB: PDB REMARK 900 RELATED ID: 7AUS RELATED DB: PDB REMARK 900 RELATED ID: 7AUT RELATED DB: PDB DBREF 7AUU A 1 103 UNP Q99321 DDP1_YEAST 1 103 DBREF 7AUU A 107 168 UNP Q99321 DDP1_YEAST 127 188 SEQADV 7AUU GLY A -2 UNP Q99321 EXPRESSION TAG SEQADV 7AUU GLY A -1 UNP Q99321 EXPRESSION TAG SEQADV 7AUU SER A 0 UNP Q99321 EXPRESSION TAG SEQADV 7AUU GLY A 104 UNP Q99321 LINKER SEQADV 7AUU GLY A 105 UNP Q99321 LINKER SEQADV 7AUU GLY A 106 UNP Q99321 LINKER SEQRES 1 A 171 GLY GLY SER MET GLY LYS THR ALA ASP ASN HIS GLY PRO SEQRES 2 A 171 VAL ARG SER GLU THR ALA ARG GLU GLY ARG GLU ASN GLN SEQRES 3 A 171 VAL TYR SER PRO VAL THR GLY ALA ARG LEU VAL ALA GLY SEQRES 4 A 171 CYS ILE CYS LEU THR PRO ASP LYS LYS GLN VAL LEU MET SEQRES 5 A 171 ILE THR SER SER ALA HIS LYS LYS ARG TRP ILE VAL PRO SEQRES 6 A 171 LYS GLY GLY VAL GLU LYS ASP GLU PRO ASN TYR GLU THR SEQRES 7 A 171 THR ALA GLN ARG GLU THR TRP GLU GLU ALA GLY CYS ILE SEQRES 8 A 171 GLY LYS ILE VAL ALA ASN LEU GLY THR VAL GLU ASP MET SEQRES 9 A 171 ARG PRO GLY GLY GLY PRO PRO ARG THR GLU PHE HIS PHE SEQRES 10 A 171 TYR GLU LEU GLU ILE GLU ASN LEU LEU ASP LYS PHE PRO SEQRES 11 A 171 GLU CYS HIS LYS ARG HIS ARG LYS LEU TYR SER TYR THR SEQRES 12 A 171 GLU ALA LYS GLN ASN LEU ILE ASP ALA LYS ARG PRO GLU SEQRES 13 A 171 LEU LEU GLU ALA LEU ASN ARG SER ALA ILE ILE LYS ASP SEQRES 14 A 171 ASP LYS HET IHP A 201 36 HET MG A 202 1 HETNAM IHP INOSITOL HEXAKISPHOSPHATE HETNAM MG MAGNESIUM ION HETSYN IHP MYO-INOSITOL HEXAKISPHOSPHATE; INOSITOL 1,2,3,4,5,6- HETSYN 2 IHP HEXAKISPHOSPHATE FORMUL 2 IHP C6 H18 O24 P6 FORMUL 3 MG MG 2+ FORMUL 4 HOH *15(H2 O) HELIX 1 AA1 ASN A 72 GLY A 86 1 15 HELIX 2 AA2 TYR A 139 ALA A 149 1 11 HELIX 3 AA3 ARG A 151 SER A 161 1 11 SHEET 1 AA1 4 LYS A 63 GLY A 65 0 SHEET 2 AA1 4 ARG A 32 LEU A 40 -1 N ALA A 35 O GLY A 64 SHEET 3 AA1 4 THR A 110 LEU A 122 1 O GLU A 111 N ARG A 32 SHEET 4 AA1 4 CYS A 87 GLU A 99 -1 N LYS A 90 O GLU A 118 SHEET 1 AA2 3 TRP A 59 ILE A 60 0 SHEET 2 AA2 3 GLN A 46 THR A 51 -1 N ILE A 50 O ILE A 60 SHEET 3 AA2 3 ARG A 134 SER A 138 -1 O TYR A 137 N VAL A 47 LINK O LYS A 63 MG MG A 202 1555 1555 2.52 LINK OE1 GLU A 84 MG MG A 202 1555 1555 2.23 LINK O32 IHP A 201 MG MG A 202 1555 1555 1.90 LINK O23 IHP A 201 MG MG A 202 1555 1555 2.97 LINK MG MG A 202 O HOH A 312 1555 1555 2.38 LINK MG MG A 202 O HOH A 313 1555 1555 2.50 CRYST1 62.120 62.120 92.472 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016098 0.009294 0.000000 0.00000 SCALE2 0.000000 0.018588 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010814 0.00000