HEADER TRANSFERASE 08-NOV-20 7AWO OBSLTE 29-SEP-21 7AWO 7PN0 TITLE CRYSTAL STRUCTURE OF THE PHOSPHORYBOSYLPYROPHOSPHATE SYNTHETASE II TITLE 2 FROM THERMUS THERMOPHILUS AT H32 SPACE GROUP COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSE-PHOSPHATE PYROPHOSPHOKINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: RPPK,5-PHOSPHO-D-RIBOSYL ALPHA-1-DIPHOSPHATE,PHOSPHORIBOSYL COMPND 5 DIPHOSPHATE SYNTHASE,PHOSPHORIBOSYL PYROPHOSPHATE SYNTHASE; COMPND 6 EC: 2.7.6.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 274; SOURCE 4 GENE: PRS, TTHA1637; SOURCE 5 EXPRESSION_SYSTEM: THERMUS THERMOPHILUS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 274 KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR V.I.TIMOFEEV,Y.A.ABRAMCHIK,M.A.KOSTROMINA,R.S.ESIPOV,I.P.KURANOVA REVDAT 2 29-SEP-21 7AWO 1 OBSLTE REMARK REVDAT 1 18-NOV-20 7AWO 0 JRNL AUTH V.I.TIMOFEEV,Y.A.ABRAMCHIK,M.A.KOSTROMINA,R.S.ESIPOV, JRNL AUTH 2 I.P.KURANOVA JRNL TITL CRYSTAL STRUCTURE OF THE PHOSPHORYBOSYLPYROPHOSPHATE JRNL TITL 2 SYNTHETASE II FROM THERMUS THERMOPHILUS AT H32 SPACE GROUP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.77 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 59101 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3111 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4323 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.2930 REMARK 3 BIN FREE R VALUE SET COUNT : 228 REMARK 3 BIN FREE R VALUE : 0.3330 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4662 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 84 REMARK 3 SOLVENT ATOMS : 257 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.132 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.128 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.091 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.048 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4837 ; 0.011 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4702 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6595 ; 1.795 ; 1.642 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10809 ; 1.449 ; 1.572 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 614 ; 7.610 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 228 ;31.784 ;20.789 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 789 ;17.728 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;17.798 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 655 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5382 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1040 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7AWO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-NOV-20. REMARK 100 THE DEPOSITION ID IS D_1292112224. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-OCT-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9790 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59412 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.010 REMARK 200 R MERGE (I) : 0.10500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.3100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.54600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5T3O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1,7M LITHIUM SULPHATE, 0,1M HEPES PH REMARK 280 7.5, 0,04%NAN3, 5MM MGCL2, COUNTER-DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 53.14500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 30.68328 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 111.09667 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 53.14500 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 30.68328 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 111.09667 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 53.14500 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 30.68328 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 111.09667 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 53.14500 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 30.68328 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 111.09667 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 53.14500 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 30.68328 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 111.09667 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 53.14500 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 30.68328 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 111.09667 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 61.36656 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 222.19333 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 61.36656 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 222.19333 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 61.36656 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 222.19333 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 61.36656 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 222.19333 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 61.36656 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 222.19333 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 61.36656 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 222.19333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMER REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMER REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 31250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 59280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -420.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -106.29000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -53.14500 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 -92.04984 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 111 CD ARG A 111 NE -0.103 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 4 CA - N - CD ANGL. DEV. = -19.6 DEGREES REMARK 500 LYS A 100 CB - CA - C ANGL. DEV. = -12.0 DEGREES REMARK 500 ARG A 111 CD - NE - CZ ANGL. DEV. = 16.3 DEGREES REMARK 500 ARG A 111 NE - CZ - NH1 ANGL. DEV. = -13.5 DEGREES REMARK 500 ARG A 111 NE - CZ - NH2 ANGL. DEV. = 13.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 13 58.03 -147.58 REMARK 500 SER A 82 35.12 70.27 REMARK 500 VAL A 197 -62.30 -90.11 REMARK 500 ASP A 199 60.77 36.33 REMARK 500 THR A 200 -30.29 160.12 REMARK 500 SER A 224 -85.34 -97.33 REMARK 500 ASN B 13 58.47 -156.46 REMARK 500 SER B 82 38.37 71.89 REMARK 500 ARG B 105 38.16 70.95 REMARK 500 THR B 129 71.52 42.55 REMARK 500 ASP B 161 -81.29 -43.91 REMARK 500 LEU B 162 -41.58 115.07 REMARK 500 LYS B 194 -98.33 -103.55 REMARK 500 GLU B 195 126.08 97.06 REMARK 500 SER B 224 -86.93 -98.24 REMARK 500 SER B 224 -83.73 -100.30 REMARK 500 LEU B 308 -81.26 -87.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 173 ASP A 174 134.11 REMARK 500 SER B 307 LEU B 308 148.71 REMARK 500 LEU B 308 PHE B 309 -144.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 111 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 404 DBREF 7AWO A 4 310 UNP Q5SHU3 Q5SHU3_THET8 4 310 DBREF 7AWO B 4 310 UNP Q5SHU3 Q5SHU3_THET8 4 310 SEQRES 1 A 307 PRO LEU LEU ILE PHE SER GLY GLN SER ASN ARG PRO LEU SEQRES 2 A 307 ALA GLN ALA ILE ALA GLU ALA LEU GLY LEU PRO LEU GLY SEQRES 3 A 307 LYS SER THR THR LEU ARG PHE ALA ASN ASP ASN LEU PHE SEQRES 4 A 307 VAL ARG TYR GLU GLU SER LEU ARG GLU GLY ASP VAL PHE SEQRES 5 A 307 ILE VAL GLN SER PHE VAL PRO PRO VAL GLN ASP HIS LEU SEQRES 6 A 307 MET GLU LEU LEU MET MET VAL ASP ALA ALA LYS GLY ALA SEQRES 7 A 307 SER ALA ALA ARG VAL THR ALA VAL ILE PRO TYR PHE SER SEQRES 8 A 307 TYR ALA ARG SER ASP LYS LYS ASP ALA PRO ARG ILE SER SEQRES 9 A 307 ILE THR ALA ARG LEU ILE ALA ASP LEU LEU GLN THR ALA SEQRES 10 A 307 GLY ALA ASP ARG VAL LEU THR MET THR LEU HIS SER PRO SEQRES 11 A 307 GLN VAL HIS GLY PHE PHE LYS ILE PRO VAL ASP HIS LEU SEQRES 12 A 307 SER ALA GLU PRO VAL ILE ALA ASN TYR PHE ALA THR ARG SEQRES 13 A 307 VAL ASP LEU GLU ASN ALA VAL VAL VAL ALA PRO ASP ALA SEQRES 14 A 307 GLY ASP LEU LYS ARG ALA SER ALA LEU ALA ARG ARG LEU SEQRES 15 A 307 GLY LEU PRO LEU ALA PHE ILE ASP LYS GLU ARG VAL SER SEQRES 16 A 307 ASP THR GLU VAL ARG VAL ARG MET LEU VAL GLY GLU VAL SEQRES 17 A 307 GLU GLY LYS THR ALA LEU ILE VAL ASP ASP GLU ILE SER SEQRES 18 A 307 THR ALA GLY SER LEU VAL GLU ALA VAL GLU ALA LEU MET SEQRES 19 A 307 GLN ALA GLY ALA LYS GLU VAL TYR ALA ALA ALA THR HIS SEQRES 20 A 307 GLY VAL TYR VAL GLY PRO ALA LEU ASP ARG ILE ALA LYS SEQRES 21 A 307 SER PRO VAL LYS GLU VAL ALA ALA THR ASP THR CYS PRO SEQRES 22 A 307 PRO LYS GLU GLY PRO LYS LEU ARG THR LEU THR VAL ALA SEQRES 23 A 307 PRO LEU PHE ALA GLU ALA ILE TRP ARG ILE HIS ARG GLY SEQRES 24 A 307 GLU SER VAL SER SER LEU PHE THR SEQRES 1 B 307 PRO LEU LEU ILE PHE SER GLY GLN SER ASN ARG PRO LEU SEQRES 2 B 307 ALA GLN ALA ILE ALA GLU ALA LEU GLY LEU PRO LEU GLY SEQRES 3 B 307 LYS SER THR THR LEU ARG PHE ALA ASN ASP ASN LEU PHE SEQRES 4 B 307 VAL ARG TYR GLU GLU SER LEU ARG GLU GLY ASP VAL PHE SEQRES 5 B 307 ILE VAL GLN SER PHE VAL PRO PRO VAL GLN ASP HIS LEU SEQRES 6 B 307 MET GLU LEU LEU MET MET VAL ASP ALA ALA LYS GLY ALA SEQRES 7 B 307 SER ALA ALA ARG VAL THR ALA VAL ILE PRO TYR PHE SER SEQRES 8 B 307 TYR ALA ARG SER ASP LYS LYS ASP ALA PRO ARG ILE SER SEQRES 9 B 307 ILE THR ALA ARG LEU ILE ALA ASP LEU LEU GLN THR ALA SEQRES 10 B 307 GLY ALA ASP ARG VAL LEU THR MET THR LEU HIS SER PRO SEQRES 11 B 307 GLN VAL HIS GLY PHE PHE LYS ILE PRO VAL ASP HIS LEU SEQRES 12 B 307 SER ALA GLU PRO VAL ILE ALA ASN TYR PHE ALA THR ARG SEQRES 13 B 307 VAL ASP LEU GLU ASN ALA VAL VAL VAL ALA PRO ASP ALA SEQRES 14 B 307 GLY ASP LEU LYS ARG ALA SER ALA LEU ALA ARG ARG LEU SEQRES 15 B 307 GLY LEU PRO LEU ALA PHE ILE ASP LYS GLU ARG VAL SER SEQRES 16 B 307 ASP THR GLU VAL ARG VAL ARG MET LEU VAL GLY GLU VAL SEQRES 17 B 307 GLU GLY LYS THR ALA LEU ILE VAL ASP ASP GLU ILE SER SEQRES 18 B 307 THR ALA GLY SER LEU VAL GLU ALA VAL GLU ALA LEU MET SEQRES 19 B 307 GLN ALA GLY ALA LYS GLU VAL TYR ALA ALA ALA THR HIS SEQRES 20 B 307 GLY VAL TYR VAL GLY PRO ALA LEU ASP ARG ILE ALA LYS SEQRES 21 B 307 SER PRO VAL LYS GLU VAL ALA ALA THR ASP THR CYS PRO SEQRES 22 B 307 PRO LYS GLU GLY PRO LYS LEU ARG THR LEU THR VAL ALA SEQRES 23 B 307 PRO LEU PHE ALA GLU ALA ILE TRP ARG ILE HIS ARG GLY SEQRES 24 B 307 GLU SER VAL SER SER LEU PHE THR HET ADP A 401 27 HET SO4 A 402 5 HET SO4 A 403 5 HET SO4 A 404 5 HET SO4 B 401 5 HET ADP B 402 27 HET SO4 B 403 5 HET SO4 B 404 5 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM SO4 SULFATE ION FORMUL 3 ADP 2(C10 H15 N5 O10 P2) FORMUL 4 SO4 6(O4 S 2-) FORMUL 11 HOH *257(H2 O) HELIX 1 AA1 ASN A 13 LEU A 24 1 12 HELIX 2 AA2 PRO A 63 ALA A 81 1 19 HELIX 3 AA3 PHE A 93 SER A 98 5 6 HELIX 4 AA4 ILE A 108 GLY A 121 1 14 HELIX 5 AA5 SER A 132 PHE A 139 5 8 HELIX 6 AA6 ALA A 148 VAL A 160 1 13 HELIX 7 AA7 ASP A 161 GLU A 163 5 3 HELIX 8 AA8 ASP A 174 GLY A 186 1 13 HELIX 9 AA9 ALA A 226 ALA A 239 1 14 HELIX 10 AB1 PRO A 256 SER A 264 1 9 HELIX 11 AB2 VAL A 288 GLY A 302 1 15 HELIX 12 AB3 VAL A 305 PHE A 309 5 5 HELIX 13 AB4 ASN B 13 LEU B 24 1 12 HELIX 14 AB5 PRO B 63 ALA B 81 1 19 HELIX 15 AB6 PHE B 93 SER B 98 5 6 HELIX 16 AB7 ILE B 108 GLY B 121 1 14 HELIX 17 AB8 SER B 132 PHE B 139 5 8 HELIX 18 AB9 ALA B 148 VAL B 160 1 13 HELIX 19 AC1 LEU B 175 LEU B 185 1 11 HELIX 20 AC2 ALA B 226 ALA B 239 1 14 HELIX 21 AC3 PRO B 256 SER B 264 1 9 HELIX 22 AC4 VAL B 288 GLY B 302 1 15 SHEET 1 AA1 5 LEU A 5 SER A 9 0 SHEET 2 AA1 5 ASP A 53 VAL A 57 1 O ASP A 53 N LEU A 6 SHEET 3 AA1 5 ARG A 85 ILE A 90 1 O ARG A 85 N VAL A 54 SHEET 4 AA1 5 ARG A 124 MET A 128 1 O LEU A 126 N ILE A 90 SHEET 5 AA1 5 VAL A 143 LEU A 146 1 O LEU A 146 N THR A 127 SHEET 1 AA2 2 SER A 31 ARG A 35 0 SHEET 2 AA2 2 LEU A 41 TYR A 45 -1 O ARG A 44 N THR A 32 SHEET 1 AA3 7 VAL A 202 VAL A 208 0 SHEET 2 AA3 7 LEU A 189 ARG A 196 -1 N ASP A 193 O MET A 206 SHEET 3 AA3 7 ALA A 165 ALA A 169 1 N VAL A 167 O ALA A 190 SHEET 4 AA3 7 THR A 215 ILE A 223 1 O LEU A 217 N VAL A 166 SHEET 5 AA3 7 GLU A 243 GLY A 251 1 O GLU A 243 N ALA A 216 SHEET 6 AA3 7 GLU A 268 THR A 272 1 O GLU A 268 N ALA A 246 SHEET 7 AA3 7 LEU A 283 LEU A 286 1 O ARG A 284 N VAL A 269 SHEET 1 AA4 5 LEU B 5 SER B 9 0 SHEET 2 AA4 5 ASP B 53 VAL B 57 1 O PHE B 55 N PHE B 8 SHEET 3 AA4 5 ARG B 85 ILE B 90 1 O VAL B 89 N ILE B 56 SHEET 4 AA4 5 ARG B 124 MET B 128 1 O LEU B 126 N ILE B 90 SHEET 5 AA4 5 VAL B 143 LEU B 146 1 O LEU B 146 N THR B 127 SHEET 1 AA5 2 SER B 31 ARG B 35 0 SHEET 2 AA5 2 LEU B 41 TYR B 45 -1 O ARG B 44 N THR B 32 SHEET 1 AA6 7 MET B 206 VAL B 208 0 SHEET 2 AA6 7 LEU B 189 ASP B 193 -1 N PHE B 191 O VAL B 208 SHEET 3 AA6 7 ALA B 165 ALA B 169 1 N ALA B 169 O ILE B 192 SHEET 4 AA6 7 THR B 215 ILE B 223 1 O LEU B 217 N VAL B 166 SHEET 5 AA6 7 GLU B 243 GLY B 251 1 O TYR B 245 N ILE B 218 SHEET 6 AA6 7 VAL B 269 THR B 272 1 O ALA B 270 N ALA B 246 SHEET 7 AA6 7 LEU B 283 LEU B 286 1 O ARG B 284 N VAL B 269 CISPEP 1 PRO A 62 PRO A 63 0 -5.02 CISPEP 2 PRO B 62 PRO B 63 0 -5.01 SITE 1 AC1 9 ARG A 97 SER A 98 ASP A 99 LYS A 100 SITE 2 AC1 9 ASP A 102 HIS A 131 PHE B 36 ASN B 38 SITE 3 AC1 9 ASN B 40 SITE 1 AC2 11 ASP A 220 GLU A 222 ILE A 223 SER A 224 SITE 2 AC2 11 THR A 225 ALA A 226 GLY A 227 SER A 228 SITE 3 AC2 11 LEU A 229 HOH A 545 HOH A 550 SITE 1 AC3 8 SER A 48 ARG A 50 SER A 304 VAL A 305 SITE 2 AC3 8 SER A 306 HOH A 530 HOH A 573 ARG B 105 SITE 1 AC4 7 THR A 129 SER A 147 ALA A 148 ARG A 177 SITE 2 AC4 7 HOH A 518 HOH A 569 HOH A 606 SITE 1 AC5 8 ARG A 105 SER B 48 ARG B 50 SER B 304 SITE 2 AC5 8 VAL B 305 SER B 306 HOH B 520 HOH B 542 SITE 1 AC6 12 PHE A 36 ASN A 38 ASN A 40 ARG B 97 SITE 2 AC6 12 SER B 98 ASP B 99 LYS B 100 ASP B 102 SITE 3 AC6 12 HIS B 131 ARG B 196 HOH B 502 HOH B 549 SITE 1 AC7 9 ARG B 196 SER B 224 THR B 225 ALA B 226 SITE 2 AC7 9 GLY B 227 SER B 228 HOH B 527 HOH B 566 SITE 3 AC7 9 HOH B 570 SITE 1 AC8 5 THR B 129 SER B 147 ALA B 148 ARG B 177 SITE 2 AC8 5 HOH B 595 CRYST1 106.290 106.290 333.290 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009408 0.005432 0.000000 0.00000 SCALE2 0.000000 0.010864 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003000 0.00000