HEADER TRANSFERASE 10-NOV-20 7AXP TITLE STRUCTURAL CHARACTERISATION OF WDR5:CS-VIP8 INTERACTION IN CIS STATE 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: WD REPEAT-CONTAINING PROTEIN 5; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BMP2-INDUCED 3-KB GENE PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: WDR5, COMPONENT OF MLL1 METHYLTRANSFERASE COMPLEX, COMPND 7 CHROMATIN REGULATOR; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: CS-VIP8; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: CYCLIC PEPTIDE, CYCLIC STRAINED VISIBLE-LIGHT COMPND 13 PHOTOSWITCH, WDR5-BINDER, DISRUPTS MLL1 COMPLEX VIA MLL1-WDR5 COMPND 14 INHIBITION SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: WDR5, BIG3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS WDR5, CYCLIC STRAINED VISIBLE-LIGHT PHOTOSWITCHES, MLL1 COMPLEX KEYWDS 2 DISRUPTION, INHIBITION OF HEMATOPOIESIS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR L.WEREL,L.-O.ESSEN REVDAT 4 31-JAN-24 7AXP 1 REMARK REVDAT 3 15-NOV-23 7AXP 1 ATOM REVDAT 2 16-FEB-22 7AXP 1 JRNL REVDAT 1 15-DEC-21 7AXP 0 JRNL AUTH L.ALBERT,J.NAGPAL,W.STEINCHEN,L.ZHANG,L.WEREL,N.DJOKOVIC, JRNL AUTH 2 D.RUZIC,M.HOFFARTH,J.XU,J.KASPAREIT,F.ABENDROTH,A.ROYANT, JRNL AUTH 3 G.BANGE,K.NIKOLIC,S.RYU,Y.DOU,L.O.ESSEN,O.VAZQUEZ JRNL TITL BISTABLE PHOTOSWITCH ALLOWS IN VIVO CONTROL OF JRNL TITL 2 HEMATOPOIESIS. JRNL REF ACS CENT.SCI. V. 8 57 2022 JRNL REFN ESSN 2374-7951 JRNL PMID 35106373 JRNL DOI 10.1021/ACSCENTSCI.1C00434 REMARK 2 REMARK 2 RESOLUTION. 2.43 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.43 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 64.77 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 56.1 REMARK 3 NUMBER OF REFLECTIONS : 12071 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.270 REMARK 3 R VALUE (WORKING SET) : 0.267 REMARK 3 FREE R VALUE : 0.331 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 605 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 64.7650 - 3.8609 1.00 5264 276 0.2400 0.3022 REMARK 3 2 3.8609 - 3.0645 0.85 4326 230 0.3102 0.3859 REMARK 3 3 3.0645 - 2.6771 0.29 1441 69 0.4116 0.4025 REMARK 3 4 2.6771 - 2.4323 0.09 435 30 0.5280 0.5460 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 44.280 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 30 THROUGH 148 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.8708 -18.1952 -7.5868 REMARK 3 T TENSOR REMARK 3 T11: 0.4165 T22: -0.1263 REMARK 3 T33: 0.0645 T12: 0.3096 REMARK 3 T13: 0.0581 T23: -0.3361 REMARK 3 L TENSOR REMARK 3 L11: 0.0514 L22: 0.0324 REMARK 3 L33: 0.1214 L12: 0.0343 REMARK 3 L13: -0.0657 L23: -0.0671 REMARK 3 S TENSOR REMARK 3 S11: -0.3611 S12: 0.0258 S13: 0.0463 REMARK 3 S21: -0.2290 S22: -0.1192 S23: -0.1971 REMARK 3 S31: -0.2551 S32: 0.0065 S33: -0.6987 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 149 THROUGH 228 ) REMARK 3 ORIGIN FOR THE GROUP (A): -45.7482 -20.2314 -15.5011 REMARK 3 T TENSOR REMARK 3 T11: 0.7514 T22: 0.2029 REMARK 3 T33: 0.3485 T12: 0.2762 REMARK 3 T13: -0.0802 T23: -0.0489 REMARK 3 L TENSOR REMARK 3 L11: 0.0981 L22: 0.0476 REMARK 3 L33: 0.0388 L12: 0.0113 REMARK 3 L13: -0.0324 L23: 0.0258 REMARK 3 S TENSOR REMARK 3 S11: -0.0202 S12: -0.0857 S13: 0.1984 REMARK 3 S21: -0.1673 S22: 0.0901 S23: -0.1099 REMARK 3 S31: -0.1507 S32: -0.1031 S33: 0.0710 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 229 THROUGH 333 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.0845 -32.6115 -19.5271 REMARK 3 T TENSOR REMARK 3 T11: 0.7424 T22: -0.0609 REMARK 3 T33: 0.2614 T12: 0.2317 REMARK 3 T13: 0.1974 T23: -0.1577 REMARK 3 L TENSOR REMARK 3 L11: 0.0476 L22: 0.0627 REMARK 3 L33: 0.0312 L12: -0.0413 REMARK 3 L13: 0.0267 L23: -0.0384 REMARK 3 S TENSOR REMARK 3 S11: 0.0205 S12: 0.1587 S13: -0.1548 REMARK 3 S21: -0.3754 S22: -0.0447 S23: 0.0112 REMARK 3 S31: 0.0622 S32: 0.0995 S33: -0.0486 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 7 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.8683 -31.7168 0.0372 REMARK 3 T TENSOR REMARK 3 T11: 0.3117 T22: 0.4788 REMARK 3 T33: 0.5378 T12: 0.2870 REMARK 3 T13: 0.1257 T23: -0.0840 REMARK 3 L TENSOR REMARK 3 L11: 0.0427 L22: 0.0275 REMARK 3 L33: 0.0360 L12: 0.0258 REMARK 3 L13: 0.0159 L23: -0.0106 REMARK 3 S TENSOR REMARK 3 S11: -0.0015 S12: -0.0701 S13: -0.0010 REMARK 3 S21: 0.0321 S22: 0.0650 S23: -0.0304 REMARK 3 S31: 0.0086 S32: -0.0255 S33: 0.0465 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7AXP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-NOV-20. REMARK 100 THE DEPOSITION ID IS D_1292112012. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 155702 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.432 REMARK 200 RESOLUTION RANGE LOW (A) : 64.765 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 13.60 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.43 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.52 REMARK 200 COMPLETENESS FOR SHELL (%) : 1.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 6IAM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% (W/V) PEG20000, 20% (V/V) PEG550 REMARK 280 MME, 0.02 M SODIUM FORMATE, 0.02 M AMMONIUM ACETATE, 0.02 M REMARK 280 TRISODIUM CITRATE, 0.02 M SODIUM POTASSIUM L-TARTRATE, 0.02 M REMARK 280 SODIUM OXAMATE, PH 8.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.68000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.84000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 32.84000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 65.68000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 THR A 3 REMARK 465 GLU A 4 REMARK 465 GLU A 5 REMARK 465 LYS A 6 REMARK 465 LYS A 7 REMARK 465 PRO A 8 REMARK 465 GLU A 9 REMARK 465 THR A 10 REMARK 465 GLU A 11 REMARK 465 ALA A 12 REMARK 465 ALA A 13 REMARK 465 ARG A 14 REMARK 465 ALA A 15 REMARK 465 GLN A 16 REMARK 465 PRO A 17 REMARK 465 THR A 18 REMARK 465 PRO A 19 REMARK 465 SER A 20 REMARK 465 SER A 21 REMARK 465 SER A 22 REMARK 465 ALA A 23 REMARK 465 THR A 24 REMARK 465 GLN A 25 REMARK 465 SER A 26 REMARK 465 LYS A 27 REMARK 465 PRO A 28 REMARK 465 THR A 29 REMARK 465 CYS A 334 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 80 CG CD OE1 OE2 REMARK 470 GLN A 204 CG CD OE1 NE2 REMARK 470 LYS A 259 CG CD CE NZ REMARK 470 LYS A 291 CD CE NZ REMARK 470 LYS A 331 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 329 O HOH A 401 2.04 REMARK 500 O PHE A 39 O HOH A 401 2.06 REMARK 500 O SER A 84 CH2 TRP A 114 2.10 REMARK 500 O GLN A 204 O HOH A 402 2.16 REMARK 500 O ASP A 199 O HOH A 402 2.17 REMARK 500 O HOH A 405 O HOH A 413 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 207 CB - CG - CD ANGL. DEV. = -15.6 DEGREES REMARK 500 LYS A 207 CD - CE - NZ ANGL. DEV. = -17.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 34 44.26 -146.42 REMARK 500 LYS A 78 84.60 3.47 REMARK 500 GLU A 80 -82.28 -97.86 REMARK 500 ASN A 100 13.26 -141.74 REMARK 500 SER A 117 41.73 -76.83 REMARK 500 SER A 118 -56.53 173.94 REMARK 500 LEU A 122 -78.46 -73.69 REMARK 500 PRO A 168 74.35 -66.51 REMARK 500 ALA A 169 -70.64 -56.86 REMARK 500 THR A 200 -82.96 -74.86 REMARK 500 ALA A 201 57.21 -61.36 REMARK 500 SER A 202 -43.51 -169.46 REMARK 500 LEU A 206 -75.17 -88.16 REMARK 500 ILE A 210 -81.35 -75.83 REMARK 500 ASP A 212 -141.82 -175.34 REMARK 500 ASP A 213 32.53 -94.89 REMARK 500 LEU A 234 49.77 -74.00 REMARK 500 GLU A 258 21.93 -155.63 REMARK 500 LYS A 259 -39.68 -146.94 REMARK 500 LYS A 291 11.83 53.56 REMARK 500 PRO A 311 -70.26 -54.45 REMARK 500 LEU A 321 -150.97 -97.80 REMARK 500 ASP A 324 -63.36 -136.88 REMARK 500 SER A 332 -118.46 168.29 REMARK 500 REMARK 500 REMARK: NULL DBREF 7AXP A 1 334 UNP P61964 WDR5_HUMAN 1 334 DBREF 7AXP B 1 7 PDB 7AXP 7AXP 1 7 SEQRES 1 A 334 MET ALA THR GLU GLU LYS LYS PRO GLU THR GLU ALA ALA SEQRES 2 A 334 ARG ALA GLN PRO THR PRO SER SER SER ALA THR GLN SER SEQRES 3 A 334 LYS PRO THR PRO VAL LYS PRO ASN TYR ALA LEU LYS PHE SEQRES 4 A 334 THR LEU ALA GLY HIS THR LYS ALA VAL SER SER VAL LYS SEQRES 5 A 334 PHE SER PRO ASN GLY GLU TRP LEU ALA SER SER SER ALA SEQRES 6 A 334 ASP LYS LEU ILE LYS ILE TRP GLY ALA TYR ASP GLY LYS SEQRES 7 A 334 PHE GLU LYS THR ILE SER GLY HIS LYS LEU GLY ILE SER SEQRES 8 A 334 ASP VAL ALA TRP SER SER ASP SER ASN LEU LEU VAL SER SEQRES 9 A 334 ALA SER ASP ASP LYS THR LEU LYS ILE TRP ASP VAL SER SEQRES 10 A 334 SER GLY LYS CYS LEU LYS THR LEU LYS GLY HIS SER ASN SEQRES 11 A 334 TYR VAL PHE CYS CYS ASN PHE ASN PRO GLN SER ASN LEU SEQRES 12 A 334 ILE VAL SER GLY SER PHE ASP GLU SER VAL ARG ILE TRP SEQRES 13 A 334 ASP VAL LYS THR GLY LYS CYS LEU LYS THR LEU PRO ALA SEQRES 14 A 334 HIS SER ASP PRO VAL SER ALA VAL HIS PHE ASN ARG ASP SEQRES 15 A 334 GLY SER LEU ILE VAL SER SER SER TYR ASP GLY LEU CYS SEQRES 16 A 334 ARG ILE TRP ASP THR ALA SER GLY GLN CYS LEU LYS THR SEQRES 17 A 334 LEU ILE ASP ASP ASP ASN PRO PRO VAL SER PHE VAL LYS SEQRES 18 A 334 PHE SER PRO ASN GLY LYS TYR ILE LEU ALA ALA THR LEU SEQRES 19 A 334 ASP ASN THR LEU LYS LEU TRP ASP TYR SER LYS GLY LYS SEQRES 20 A 334 CYS LEU LYS THR TYR THR GLY HIS LYS ASN GLU LYS TYR SEQRES 21 A 334 CYS ILE PHE ALA ASN PHE SER VAL THR GLY GLY LYS TRP SEQRES 22 A 334 ILE VAL SER GLY SER GLU ASP ASN LEU VAL TYR ILE TRP SEQRES 23 A 334 ASN LEU GLN THR LYS GLU ILE VAL GLN LYS LEU GLN GLY SEQRES 24 A 334 HIS THR ASP VAL VAL ILE SER THR ALA CYS HIS PRO THR SEQRES 25 A 334 GLU ASN ILE ILE ALA SER ALA ALA LEU GLU ASN ASP LYS SEQRES 26 A 334 THR ILE LYS LEU TRP LYS SER ASP CYS SEQRES 1 B 7 ALQ 4FO ARG ABA DPN EDN S7Z HET ALQ B 1 5 HET 4FO B 2 7 HET ABA B 4 6 HET DPN B 5 11 HET EDN B 6 4 HET S7Z B 7 22 HETNAM ALQ 2-METHYL-PROPIONIC ACID HETNAM 4FO (2R)-2,4-DIAMINOBUTANOIC ACID HETNAM ABA ALPHA-AMINOBUTYRIC ACID HETNAM DPN D-PHENYLALANINE HETNAM EDN ETHANE-1,2-DIAMINE HETNAM S7Z (E)-(4-((2,6-DIFLUORO-4-(HYDROXYMETHYL)PHENYL) HETNAM 2 S7Z DIAZENYL)-2,6-DIFLUOROPHENYL)METHANOL HETSYN EDN ETHYLENEDIAMINE HETSYN S7Z [4-[(~{Z})-[2,6-BIS(FLUORANYL)-4-(HYDROXYMETHYL) HETSYN 2 S7Z PHENYL]DIAZENYL]-3,5-BIS(FLUORANYL)PHENYL]METHANOL FORMUL 2 ALQ C4 H8 O2 FORMUL 2 4FO C4 H10 N2 O2 FORMUL 2 ABA C4 H9 N O2 FORMUL 2 DPN C9 H11 N O2 FORMUL 2 EDN C2 H8 N2 FORMUL 2 S7Z C14 H10 F4 N2 O2 FORMUL 3 HOH *20(H2 O) SHEET 1 AA1 4 ALA A 36 LEU A 41 0 SHEET 2 AA1 4 ILE A 327 LYS A 331 -1 O ILE A 327 N LEU A 41 SHEET 3 AA1 4 ILE A 315 ALA A 320 -1 N SER A 318 O LYS A 328 SHEET 4 AA1 4 VAL A 304 CYS A 309 -1 N ALA A 308 O ALA A 317 SHEET 1 AA2 4 VAL A 48 PHE A 53 0 SHEET 2 AA2 4 TRP A 59 SER A 64 -1 O SER A 63 N SER A 50 SHEET 3 AA2 4 LEU A 68 GLY A 73 -1 O LYS A 70 N SER A 62 SHEET 4 AA2 4 GLY A 77 SER A 84 -1 O LYS A 81 N ILE A 71 SHEET 1 AA3 4 ILE A 90 TRP A 95 0 SHEET 2 AA3 4 LEU A 101 SER A 106 -1 O ALA A 105 N SER A 91 SHEET 3 AA3 4 THR A 110 ASP A 115 -1 O TRP A 114 N LEU A 102 SHEET 4 AA3 4 CYS A 121 LYS A 126 -1 O LEU A 125 N LEU A 111 SHEET 1 AA4 4 VAL A 132 PHE A 137 0 SHEET 2 AA4 4 LEU A 143 SER A 148 -1 O GLY A 147 N CYS A 134 SHEET 3 AA4 4 VAL A 153 ASP A 157 -1 O TRP A 156 N ILE A 144 SHEET 4 AA4 4 CYS A 163 LEU A 167 -1 O LEU A 167 N VAL A 153 SHEET 1 AA5 4 VAL A 174 PHE A 179 0 SHEET 2 AA5 4 LEU A 185 SER A 190 -1 O VAL A 187 N HIS A 178 SHEET 3 AA5 4 CYS A 195 ASP A 199 -1 O TRP A 198 N ILE A 186 SHEET 4 AA5 4 CYS A 205 THR A 208 -1 O LEU A 206 N ILE A 197 SHEET 1 AA6 4 VAL A 217 PHE A 222 0 SHEET 2 AA6 4 ILE A 229 THR A 233 -1 O ALA A 232 N PHE A 219 SHEET 3 AA6 4 THR A 237 ASP A 242 -1 O TRP A 241 N ILE A 229 SHEET 4 AA6 4 LYS A 247 THR A 253 -1 O TYR A 252 N LEU A 238 SHEET 1 AA7 4 ALA A 264 ASN A 265 0 SHEET 2 AA7 4 TRP A 273 SER A 276 -1 O VAL A 275 N ASN A 265 SHEET 3 AA7 4 LEU A 282 ASN A 287 -1 O TRP A 286 N ILE A 274 SHEET 4 AA7 4 ILE A 293 GLN A 298 -1 O VAL A 294 N ILE A 285 LINK C 4FO B 2 N ARG B 3 1555 1555 1.33 LINK C ARG B 3 N ABA B 4 1555 1555 1.33 LINK C ABA B 4 N DPN B 5 1555 1555 1.33 CRYST1 99.240 99.240 98.520 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010077 0.005818 0.000000 0.00000 SCALE2 0.000000 0.011635 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010150 0.00000