HEADER TRANSFERASE 10-NOV-20 7AXS TITLE STRUCTURAL CHARACTERISATION OF WDR5:CS-VIP8 INTERACTION IN CIS STATE 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: WD REPEAT-CONTAINING PROTEIN 5; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BMP2-INDUCED 3-KB GENE PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: WDR5, COMPONENT OF MLL1 METHYLTRANSFERASE COMPLEX, COMPND 7 CHROMATIN REGULATOR; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: CS-VIP8, (ALQ)(4FO)R(ABA)(DPN)(EDN)(S7Z); COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: CYCLIC PEPTIDE, CYCLIC STRAINED VISIBLE-LIGHT COMPND 13 PHOTOSWITCH, WDR5-BINDER, DISRUPTS MLL1 COMPLEX VIA MLL1-WDR5 COMPND 14 INHIBITION SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: WDR5, BIG3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS WDR5, CYCLIC STRAINED VISIBLE-LIGHT PHOTOSWITCHES, MLL1 COMPLEX KEYWDS 2 DISRUPTION, INHIBITION OF HEMATOPOIESIS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR L.WEREL,L.-O.ESSEN REVDAT 5 07-FEB-24 7AXS 1 REMARK REVDAT 4 15-NOV-23 7AXS 1 LINK ATOM REVDAT 3 19-JUL-23 7AXS 1 COMPND SOURCE REMARK DBREF REVDAT 3 2 1 SEQRES HELIX LINK ATOM REVDAT 2 16-FEB-22 7AXS 1 JRNL REVDAT 1 15-DEC-21 7AXS 0 JRNL AUTH L.ALBERT,J.NAGPAL,W.STEINCHEN,L.ZHANG,L.WEREL,N.DJOKOVIC, JRNL AUTH 2 D.RUZIC,M.HOFFARTH,J.XU,J.KASPAREIT,F.ABENDROTH,A.ROYANT, JRNL AUTH 3 G.BANGE,K.NIKOLIC,S.RYU,Y.DOU,L.O.ESSEN,O.VAZQUEZ JRNL TITL BISTABLE PHOTOSWITCH ALLOWS IN VIVO CONTROL OF JRNL TITL 2 HEMATOPOIESIS. JRNL REF ACS CENT.SCI. V. 8 57 2022 JRNL REFN ESSN 2374-7951 JRNL PMID 35106373 JRNL DOI 10.1021/ACSCENTSCI.1C00434 REMARK 2 REMARK 2 RESOLUTION. 1.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.47 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.5 REMARK 3 NUMBER OF REFLECTIONS : 22297 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1123 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.4680 - 3.7603 0.99 3124 147 0.1824 0.2103 REMARK 3 2 3.7603 - 2.9849 0.99 2937 168 0.1846 0.2227 REMARK 3 3 2.9849 - 2.6076 0.95 2838 141 0.2040 0.2338 REMARK 3 4 2.6076 - 2.3692 0.90 2620 158 0.2082 0.2491 REMARK 3 5 2.3692 - 2.1994 0.87 2557 138 0.2087 0.2318 REMARK 3 6 2.1994 - 2.0697 0.85 2471 138 0.2174 0.2794 REMARK 3 7 2.0697 - 1.9661 0.82 2367 115 0.2313 0.2868 REMARK 3 8 1.9661 - 1.8805 0.78 2260 118 0.2835 0.2873 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.970 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.76 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 30 THROUGH 148 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.6772 1.4557 13.6554 REMARK 3 T TENSOR REMARK 3 T11: 0.1696 T22: 0.1586 REMARK 3 T33: 0.1841 T12: -0.0028 REMARK 3 T13: -0.0058 T23: -0.0237 REMARK 3 L TENSOR REMARK 3 L11: 0.8417 L22: 0.2192 REMARK 3 L33: 0.1480 L12: -0.2003 REMARK 3 L13: 0.0906 L23: -0.0515 REMARK 3 S TENSOR REMARK 3 S11: -0.0061 S12: -0.0283 S13: 0.0901 REMARK 3 S21: 0.0271 S22: -0.0103 S23: -0.0226 REMARK 3 S31: -0.0314 S32: -0.1120 S33: -0.0006 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 149 THROUGH 228 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.8696 -7.4699 12.9322 REMARK 3 T TENSOR REMARK 3 T11: 0.1643 T22: 0.1741 REMARK 3 T33: 0.1617 T12: 0.0004 REMARK 3 T13: -0.0127 T23: -0.0229 REMARK 3 L TENSOR REMARK 3 L11: 0.6206 L22: 0.3526 REMARK 3 L33: 0.2106 L12: -0.1268 REMARK 3 L13: -0.0809 L23: -0.0943 REMARK 3 S TENSOR REMARK 3 S11: -0.0417 S12: -0.0488 S13: 0.0407 REMARK 3 S21: 0.0904 S22: -0.0200 S23: -0.0346 REMARK 3 S31: -0.0080 S32: 0.1609 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 229 THROUGH 333 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.2298 -13.9489 23.7011 REMARK 3 T TENSOR REMARK 3 T11: 0.1835 T22: 0.1870 REMARK 3 T33: 0.1749 T12: -0.0040 REMARK 3 T13: -0.0124 T23: -0.0206 REMARK 3 L TENSOR REMARK 3 L11: 0.3033 L22: 0.6722 REMARK 3 L33: 0.7768 L12: -0.1735 REMARK 3 L13: -0.1288 L23: -0.4805 REMARK 3 S TENSOR REMARK 3 S11: -0.0188 S12: -0.1122 S13: -0.0768 REMARK 3 S21: 0.0205 S22: 0.0198 S23: -0.0493 REMARK 3 S31: 0.0482 S32: -0.0119 S33: -0.0003 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 7 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.2227 -15.4469 2.1234 REMARK 3 T TENSOR REMARK 3 T11: 0.1381 T22: 0.3009 REMARK 3 T33: 0.2846 T12: 0.0193 REMARK 3 T13: -0.0601 T23: 0.0541 REMARK 3 L TENSOR REMARK 3 L11: 0.0985 L22: 0.0238 REMARK 3 L33: 0.7599 L12: 0.0488 REMARK 3 L13: -0.2737 L23: -0.1353 REMARK 3 S TENSOR REMARK 3 S11: 0.0296 S12: -0.0046 S13: -0.0319 REMARK 3 S21: 0.0005 S22: 0.0650 S23: -0.0039 REMARK 3 S31: -0.0592 S32: 0.1827 S33: 0.0420 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7AXS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-NOV-20. REMARK 100 THE DEPOSITION ID IS D_1292111908. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-AUG-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22302 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.880 REMARK 200 RESOLUTION RANGE LOW (A) : 44.510 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.5 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : 0.02852 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.1200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 77.7 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : 0.22420 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.780 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 6IAM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% (W/V) PEG20000, 20% (V/V) PEG550 REMARK 280 MME, 0.02 M SODIUM FORMATE, 0.02 M AMMONIUM ACETATE, 0.02 M REMARK 280 TRISODIUM CITRATE, 0.02 M SODIUM POTASSIUM L-TARTRATE, 0.02 M REMARK 280 SODIUM OXAMATE, PH 8.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.51100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.73000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.58150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.73000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.51100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 23.58150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 THR A 3 REMARK 465 GLU A 4 REMARK 465 GLU A 5 REMARK 465 LYS A 6 REMARK 465 LYS A 7 REMARK 465 PRO A 8 REMARK 465 GLU A 9 REMARK 465 THR A 10 REMARK 465 GLU A 11 REMARK 465 ALA A 12 REMARK 465 ALA A 13 REMARK 465 ARG A 14 REMARK 465 ALA A 15 REMARK 465 GLN A 16 REMARK 465 PRO A 17 REMARK 465 THR A 18 REMARK 465 PRO A 19 REMARK 465 SER A 20 REMARK 465 SER A 21 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NAD EDN B 6 CB S7Z B 7 1.70 REMARK 500 O HOH A 404 O HOH A 604 1.83 REMARK 500 O HOH A 513 O HOH A 645 1.89 REMARK 500 O HOH A 640 O HOH A 645 1.99 REMARK 500 NE2 GLN A 140 O HOH A 401 2.00 REMARK 500 O HOH A 575 O HOH A 618 2.02 REMARK 500 O HOH A 481 O HOH A 614 2.08 REMARK 500 O CYS A 334 O HOH A 402 2.12 REMARK 500 O THR A 166 O HOH A 403 2.14 REMARK 500 O HOH A 589 O HOH A 656 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 616 O HOH B 111 4545 1.92 REMARK 500 O HOH A 561 O HOH A 602 1455 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 334 CA - CB - SG ANGL. DEV. = 6.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 136 143.03 -173.56 REMARK 500 GLU A 151 6.51 86.49 REMARK 500 ASP A 211 87.23 -62.36 REMARK 500 ASP A 212 -159.22 102.76 REMARK 500 ASP A 213 170.51 -51.31 REMARK 500 PHE A 219 146.95 -172.31 REMARK 500 LEU A 234 47.06 -77.01 REMARK 500 LYS A 259 -51.38 -129.72 REMARK 500 ASP A 324 -63.15 -147.64 REMARK 500 ASP A 324 -63.61 -147.64 REMARK 500 ASP A 333 47.07 -99.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 209 ILE A 210 147.51 REMARK 500 ASP A 333 CYS A 334 148.77 REMARK 500 ASP A 333 CYS A 334 141.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASP A 333 -13.39 REMARK 500 ASP A 333 15.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7AXP RELATED DB: PDB REMARK 900 WDR5:CS-VIP8 COCRYSTAL IN CIS STATE 2 REMARK 900 RELATED ID: 7AXQ RELATED DB: PDB REMARK 900 WDR5:CS-VIP8 COCRYSTAL ILLUMINATED AT 180 K DBREF 7AXS A 1 334 UNP P61964 WDR5_HUMAN 1 334 DBREF 7AXS B 1 7 PDB 7AXS 7AXS 1 7 SEQRES 1 A 334 MET ALA THR GLU GLU LYS LYS PRO GLU THR GLU ALA ALA SEQRES 2 A 334 ARG ALA GLN PRO THR PRO SER SER SER ALA THR GLN SER SEQRES 3 A 334 LYS PRO THR PRO VAL LYS PRO ASN TYR ALA LEU LYS PHE SEQRES 4 A 334 THR LEU ALA GLY HIS THR LYS ALA VAL SER SER VAL LYS SEQRES 5 A 334 PHE SER PRO ASN GLY GLU TRP LEU ALA SER SER SER ALA SEQRES 6 A 334 ASP LYS LEU ILE LYS ILE TRP GLY ALA TYR ASP GLY LYS SEQRES 7 A 334 PHE GLU LYS THR ILE SER GLY HIS LYS LEU GLY ILE SER SEQRES 8 A 334 ASP VAL ALA TRP SER SER ASP SER ASN LEU LEU VAL SER SEQRES 9 A 334 ALA SER ASP ASP LYS THR LEU LYS ILE TRP ASP VAL SER SEQRES 10 A 334 SER GLY LYS CYS LEU LYS THR LEU LYS GLY HIS SER ASN SEQRES 11 A 334 TYR VAL PHE CYS CYS ASN PHE ASN PRO GLN SER ASN LEU SEQRES 12 A 334 ILE VAL SER GLY SER PHE ASP GLU SER VAL ARG ILE TRP SEQRES 13 A 334 ASP VAL LYS THR GLY LYS CYS LEU LYS THR LEU PRO ALA SEQRES 14 A 334 HIS SER ASP PRO VAL SER ALA VAL HIS PHE ASN ARG ASP SEQRES 15 A 334 GLY SER LEU ILE VAL SER SER SER TYR ASP GLY LEU CYS SEQRES 16 A 334 ARG ILE TRP ASP THR ALA SER GLY GLN CYS LEU LYS THR SEQRES 17 A 334 LEU ILE ASP ASP ASP ASN PRO PRO VAL SER PHE VAL LYS SEQRES 18 A 334 PHE SER PRO ASN GLY LYS TYR ILE LEU ALA ALA THR LEU SEQRES 19 A 334 ASP ASN THR LEU LYS LEU TRP ASP TYR SER LYS GLY LYS SEQRES 20 A 334 CYS LEU LYS THR TYR THR GLY HIS LYS ASN GLU LYS TYR SEQRES 21 A 334 CYS ILE PHE ALA ASN PHE SER VAL THR GLY GLY LYS TRP SEQRES 22 A 334 ILE VAL SER GLY SER GLU ASP ASN LEU VAL TYR ILE TRP SEQRES 23 A 334 ASN LEU GLN THR LYS GLU ILE VAL GLN LYS LEU GLN GLY SEQRES 24 A 334 HIS THR ASP VAL VAL ILE SER THR ALA CYS HIS PRO THR SEQRES 25 A 334 GLU ASN ILE ILE ALA SER ALA ALA LEU GLU ASN ASP LYS SEQRES 26 A 334 THR ILE LYS LEU TRP LYS SER ASP CYS SEQRES 1 B 7 ALQ 4FO ARG ABA DPN EDN S7Z HET ALQ B 1 5 HET 4FO B 2 7 HET ABA B 4 6 HET DPN B 5 11 HET EDN B 6 4 HET S7Z B 7 22 HETNAM ALQ 2-METHYL-PROPIONIC ACID HETNAM 4FO (2R)-2,4-DIAMINOBUTANOIC ACID HETNAM ABA ALPHA-AMINOBUTYRIC ACID HETNAM DPN D-PHENYLALANINE HETNAM EDN ETHANE-1,2-DIAMINE HETNAM S7Z (E)-(4-((2,6-DIFLUORO-4-(HYDROXYMETHYL)PHENYL) HETNAM 2 S7Z DIAZENYL)-2,6-DIFLUOROPHENYL)METHANOL HETSYN EDN ETHYLENEDIAMINE HETSYN S7Z [4-[(~{Z})-[2,6-BIS(FLUORANYL)-4-(HYDROXYMETHYL) HETSYN 2 S7Z PHENYL]DIAZENYL]-3,5-BIS(FLUORANYL)PHENYL]METHANOL FORMUL 2 ALQ C4 H8 O2 FORMUL 2 4FO C4 H10 N2 O2 FORMUL 2 ABA C4 H9 N O2 FORMUL 2 DPN C9 H11 N O2 FORMUL 2 EDN C2 H8 N2 FORMUL 2 S7Z C14 H10 F4 N2 O2 FORMUL 3 HOH *285(H2 O) HELIX 1 AA1 ALQ B 1 DPN B 5 5 5 SHEET 1 AA1 4 ALA A 36 LEU A 41 0 SHEET 2 AA1 4 ILE A 327 LYS A 331 -1 O ILE A 327 N LEU A 41 SHEET 3 AA1 4 ILE A 315 ALA A 320 -1 N ILE A 316 O TRP A 330 SHEET 4 AA1 4 VAL A 304 CYS A 309 -1 N SER A 306 O ALA A 319 SHEET 1 AA2 4 VAL A 48 PHE A 53 0 SHEET 2 AA2 4 TRP A 59 SER A 64 -1 O SER A 63 N SER A 49 SHEET 3 AA2 4 LEU A 68 GLY A 73 -1 O TRP A 72 N LEU A 60 SHEET 4 AA2 4 PHE A 79 SER A 84 -1 O ILE A 83 N ILE A 69 SHEET 1 AA3 4 ILE A 90 TRP A 95 0 SHEET 2 AA3 4 LEU A 101 SER A 106 -1 O ALA A 105 N SER A 91 SHEET 3 AA3 4 THR A 110 ASP A 115 -1 O TRP A 114 N LEU A 102 SHEET 4 AA3 4 CYS A 121 LYS A 126 -1 O LEU A 125 N LEU A 111 SHEET 1 AA4 4 VAL A 132 PHE A 137 0 SHEET 2 AA4 4 LEU A 143 SER A 148 -1 O VAL A 145 N ASN A 136 SHEET 3 AA4 4 VAL A 153 ASP A 157 -1 O TRP A 156 N ILE A 144 SHEET 4 AA4 4 CYS A 163 LEU A 167 -1 O LEU A 167 N VAL A 153 SHEET 1 AA5 4 VAL A 174 PHE A 179 0 SHEET 2 AA5 4 LEU A 185 SER A 190 -1 O VAL A 187 N HIS A 178 SHEET 3 AA5 4 CYS A 195 ASP A 199 -1 O TRP A 198 N ILE A 186 SHEET 4 AA5 4 CYS A 205 LEU A 209 -1 O LEU A 209 N CYS A 195 SHEET 1 AA6 4 VAL A 217 PHE A 222 0 SHEET 2 AA6 4 TYR A 228 THR A 233 -1 O LEU A 230 N LYS A 221 SHEET 3 AA6 4 THR A 237 ASP A 242 -1 O TRP A 241 N ILE A 229 SHEET 4 AA6 4 LYS A 247 TYR A 252 -1 O TYR A 252 N LEU A 238 SHEET 1 AA7 4 ALA A 264 SER A 267 0 SHEET 2 AA7 4 TRP A 273 SER A 276 -1 O TRP A 273 N SER A 267 SHEET 3 AA7 4 VAL A 283 ASN A 287 -1 O TYR A 284 N SER A 276 SHEET 4 AA7 4 ILE A 293 LEU A 297 -1 O VAL A 294 N ILE A 285 LINK NZ 4FO B 2 CAA S7Z B 7 1555 1555 1.56 LINK C ARG B 3 N ABA B 4 1555 1555 1.33 LINK C ABA B 4 N DPN B 5 1555 1555 1.33 CRYST1 47.022 47.163 133.460 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021267 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021203 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007493 0.00000