HEADER TRANSFERASE 10-NOV-20 7AXX TITLE STRUCTURE OF WDR5:CS-VIP8 CRYSTAL AFTER ILLUMINATION AT 405 NM AND TITLE 2 ROOM TEMPERATURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: WD REPEAT-CONTAINING PROTEIN 5; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BMP2-INDUCED 3-KB GENE PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: WDR5, COMPONENT OF MLL1 METHYLTRANSFERASE COMPLEX, COMPND 7 CHROMATIN REGULATOR; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: (ALQ)(4FO)R(ABA)(DPN)(EDN)(S7Z); COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: CYCLIC PEPTIDE, CYCLIC STRAINED VISIBLE-LIGHT COMPND 13 PHOTOSWITCH, WDR5-BINDER, DISRUPTS MLL1 COMPLEX VIA MLL1-WDR5 COMPND 14 INHIBITION SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: WDR5, BIG3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS WDR5, CYCLIC STRAINED VISIBLE-LIGHT PHOTOSWITCHES, MLL1 COMPLEX KEYWDS 2 DISRUPTION, INHIBITION OF HEMATOPOIESIS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR L.WEREL,L.-O.ESSEN REVDAT 5 07-FEB-24 7AXX 1 REMARK REVDAT 4 15-NOV-23 7AXX 1 LINK ATOM REVDAT 3 19-JUL-23 7AXX 1 COMPND SOURCE REMARK DBREF REVDAT 3 2 1 SEQRES HELIX LINK ATOM REVDAT 2 16-FEB-22 7AXX 1 JRNL REVDAT 1 15-DEC-21 7AXX 0 JRNL AUTH L.ALBERT,J.NAGPAL,W.STEINCHEN,L.ZHANG,L.WEREL,N.DJOKOVIC, JRNL AUTH 2 D.RUZIC,M.HOFFARTH,J.XU,J.KASPAREIT,F.ABENDROTH,A.ROYANT, JRNL AUTH 3 G.BANGE,K.NIKOLIC,S.RYU,Y.DOU,L.O.ESSEN,O.VAZQUEZ JRNL TITL BISTABLE PHOTOSWITCH ALLOWS IN VIVO CONTROL OF JRNL TITL 2 HEMATOPOIESIS. JRNL REF ACS CENT.SCI. V. 8 57 2022 JRNL REFN ESSN 2374-7951 JRNL PMID 35106373 JRNL DOI 10.1021/ACSCENTSCI.1C00434 REMARK 2 REMARK 2 RESOLUTION. 1.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 24059 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1279 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.84 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1038 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 57.68 REMARK 3 BIN R VALUE (WORKING SET) : 0.2680 REMARK 3 BIN FREE R VALUE SET COUNT : 73 REMARK 3 BIN FREE R VALUE : 0.3040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2455 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 176 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.32 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.88000 REMARK 3 B22 (A**2) : -1.56000 REMARK 3 B33 (A**2) : 0.69000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.136 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.131 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.097 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.703 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2534 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2333 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3426 ; 1.530 ; 1.883 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5444 ; 1.068 ; 2.926 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 314 ; 7.550 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 92 ;31.179 ;25.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 433 ;13.582 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;20.354 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 384 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2746 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 490 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1262 ; 1.672 ; 1.399 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1262 ; 1.672 ; 1.399 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1570 ; 2.604 ; 2.088 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1571 ; 2.603 ; 2.088 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1272 ; 1.995 ; 1.571 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1249 ; 2.011 ; 1.580 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1824 ; 3.101 ; 2.292 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2820 ; 5.630 ;16.871 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2745 ; 5.589 ;16.680 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 30 A 148 REMARK 3 ORIGIN FOR THE GROUP (A): 15.0590 0.7410 -19.9370 REMARK 3 T TENSOR REMARK 3 T11: 0.0044 T22: 0.1360 REMARK 3 T33: 0.0203 T12: -0.0041 REMARK 3 T13: 0.0027 T23: 0.0147 REMARK 3 L TENSOR REMARK 3 L11: 0.7122 L22: 1.9548 REMARK 3 L33: 1.7806 L12: 0.0281 REMARK 3 L13: 0.2789 L23: 0.1843 REMARK 3 S TENSOR REMARK 3 S11: 0.0129 S12: 0.0215 S13: 0.0735 REMARK 3 S21: -0.0523 S22: -0.0536 S23: -0.1236 REMARK 3 S31: -0.0621 S32: 0.1420 S33: 0.0406 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 149 A 228 REMARK 3 ORIGIN FOR THE GROUP (A): 6.9170 -16.7460 -19.3680 REMARK 3 T TENSOR REMARK 3 T11: 0.0715 T22: 0.0767 REMARK 3 T33: 0.0267 T12: -0.0172 REMARK 3 T13: -0.0249 T23: 0.0076 REMARK 3 L TENSOR REMARK 3 L11: 2.9553 L22: 2.2967 REMARK 3 L33: 2.9564 L12: -0.5587 REMARK 3 L13: 0.3567 L23: 0.0939 REMARK 3 S TENSOR REMARK 3 S11: 0.0547 S12: -0.0928 S13: -0.2143 REMARK 3 S21: -0.0546 S22: -0.0134 S23: 0.1121 REMARK 3 S31: 0.2909 S32: -0.1166 S33: -0.0413 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 229 A 333 REMARK 3 ORIGIN FOR THE GROUP (A): 0.9600 -1.1910 -7.4960 REMARK 3 T TENSOR REMARK 3 T11: 0.0123 T22: 0.1408 REMARK 3 T33: 0.0227 T12: 0.0118 REMARK 3 T13: 0.0089 T23: -0.0075 REMARK 3 L TENSOR REMARK 3 L11: 1.8439 L22: 2.0342 REMARK 3 L33: 2.0748 L12: 0.7037 REMARK 3 L13: -0.5294 L23: -0.2780 REMARK 3 S TENSOR REMARK 3 S11: -0.0111 S12: -0.0467 S13: 0.0053 REMARK 3 S21: 0.0782 S22: 0.0303 S23: 0.0958 REMARK 3 S31: 0.0545 S32: -0.1094 S33: -0.0192 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 7 REMARK 3 ORIGIN FOR THE GROUP (A): -0.4460 1.3230 -26.2950 REMARK 3 T TENSOR REMARK 3 T11: 0.3510 T22: 0.4126 REMARK 3 T33: 0.4533 T12: -0.0393 REMARK 3 T13: -0.0379 T23: 0.0806 REMARK 3 L TENSOR REMARK 3 L11: 8.9790 L22: 5.5457 REMARK 3 L33: 4.8705 L12: -6.1135 REMARK 3 L13: 3.0872 L23: -4.0475 REMARK 3 S TENSOR REMARK 3 S11: -0.1213 S12: 0.6708 S13: 0.2158 REMARK 3 S21: 0.0402 S22: -0.0453 S23: 0.2151 REMARK 3 S31: -0.0972 S32: -0.3282 S33: 0.1666 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.00 REMARK 3 ION PROBE RADIUS : 0.70 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 7AXX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-NOV-20. REMARK 100 THE DEPOSITION ID IS D_1292111901. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-AUG-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25827 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.790 REMARK 200 RESOLUTION RANGE LOW (A) : 44.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.08507 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.3200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 66.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.61860 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.440 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6IAM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% (W/V) PEG20000, 20% (V/V) PEG550 REMARK 280 MME, 0.02 M SODIUM FORMATE, 0.02 M AMMONIUM ACETATE, 0.02 M REMARK 280 TRISODIUM CITRATE, 0.02 M SODIUM POTASSIUM L-TARTRATE, 0.02 M REMARK 280 SODIUM OXAMATE, PH 8.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.01500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.16000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.45000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.16000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.01500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 23.45000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 THR A 3 REMARK 465 GLU A 4 REMARK 465 GLU A 5 REMARK 465 LYS A 6 REMARK 465 LYS A 7 REMARK 465 PRO A 8 REMARK 465 GLU A 9 REMARK 465 THR A 10 REMARK 465 GLU A 11 REMARK 465 ALA A 12 REMARK 465 ALA A 13 REMARK 465 ARG A 14 REMARK 465 ALA A 15 REMARK 465 GLN A 16 REMARK 465 PRO A 17 REMARK 465 THR A 18 REMARK 465 PRO A 19 REMARK 465 SER A 20 REMARK 465 SER A 21 REMARK 465 SER A 22 REMARK 465 ASP A 211 REMARK 465 ASP A 212 REMARK 465 ASP A 213 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ 4FO B 402 OA S7Z B 407 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALQ B 401 CA - C - N ANGL. DEV. = 26.0 DEGREES REMARK 500 ALQ B 401 O - C - N ANGL. DEV. = -14.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 24 -72.61 -43.42 REMARK 500 GLN A 25 132.69 55.06 REMARK 500 SER A 26 -62.49 -104.41 REMARK 500 LYS A 27 114.74 128.89 REMARK 500 GLU A 151 4.76 84.61 REMARK 500 LEU A 234 42.84 -79.65 REMARK 500 LYS A 259 -48.68 -133.83 REMARK 500 ASP A 324 -66.44 -121.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7AXP RELATED DB: PDB REMARK 900 WDR5:CS-VIP8 COCRYSTAL IN STATE 2 REMARK 900 RELATED ID: 7AXQ RELATED DB: PDB REMARK 900 WDR5:CS-VIP8 COCRYSTAL ILLUMINATED AT 180 K REMARK 900 RELATED ID: 7AXS RELATED DB: PDB REMARK 900 WDR5:CS-VIP8 COCRYSTAL IN STATE 2 REMARK 900 RELATED ID: 7AXU RELATED DB: PDB REMARK 900 WDR5:CS-VIP8 COCRYSTAL ILLUMINATED IN SITU DBREF 7AXX A 1 334 UNP P61964 WDR5_HUMAN 1 334 DBREF 7AXX B 401 407 PDB 7AXX 7AXX 401 407 SEQRES 1 A 334 MET ALA THR GLU GLU LYS LYS PRO GLU THR GLU ALA ALA SEQRES 2 A 334 ARG ALA GLN PRO THR PRO SER SER SER ALA THR GLN SER SEQRES 3 A 334 LYS PRO THR PRO VAL LYS PRO ASN TYR ALA LEU LYS PHE SEQRES 4 A 334 THR LEU ALA GLY HIS THR LYS ALA VAL SER SER VAL LYS SEQRES 5 A 334 PHE SER PRO ASN GLY GLU TRP LEU ALA SER SER SER ALA SEQRES 6 A 334 ASP LYS LEU ILE LYS ILE TRP GLY ALA TYR ASP GLY LYS SEQRES 7 A 334 PHE GLU LYS THR ILE SER GLY HIS LYS LEU GLY ILE SER SEQRES 8 A 334 ASP VAL ALA TRP SER SER ASP SER ASN LEU LEU VAL SER SEQRES 9 A 334 ALA SER ASP ASP LYS THR LEU LYS ILE TRP ASP VAL SER SEQRES 10 A 334 SER GLY LYS CYS LEU LYS THR LEU LYS GLY HIS SER ASN SEQRES 11 A 334 TYR VAL PHE CYS CYS ASN PHE ASN PRO GLN SER ASN LEU SEQRES 12 A 334 ILE VAL SER GLY SER PHE ASP GLU SER VAL ARG ILE TRP SEQRES 13 A 334 ASP VAL LYS THR GLY LYS CYS LEU LYS THR LEU PRO ALA SEQRES 14 A 334 HIS SER ASP PRO VAL SER ALA VAL HIS PHE ASN ARG ASP SEQRES 15 A 334 GLY SER LEU ILE VAL SER SER SER TYR ASP GLY LEU CYS SEQRES 16 A 334 ARG ILE TRP ASP THR ALA SER GLY GLN CYS LEU LYS THR SEQRES 17 A 334 LEU ILE ASP ASP ASP ASN PRO PRO VAL SER PHE VAL LYS SEQRES 18 A 334 PHE SER PRO ASN GLY LYS TYR ILE LEU ALA ALA THR LEU SEQRES 19 A 334 ASP ASN THR LEU LYS LEU TRP ASP TYR SER LYS GLY LYS SEQRES 20 A 334 CYS LEU LYS THR TYR THR GLY HIS LYS ASN GLU LYS TYR SEQRES 21 A 334 CYS ILE PHE ALA ASN PHE SER VAL THR GLY GLY LYS TRP SEQRES 22 A 334 ILE VAL SER GLY SER GLU ASP ASN LEU VAL TYR ILE TRP SEQRES 23 A 334 ASN LEU GLN THR LYS GLU ILE VAL GLN LYS LEU GLN GLY SEQRES 24 A 334 HIS THR ASP VAL VAL ILE SER THR ALA CYS HIS PRO THR SEQRES 25 A 334 GLU ASN ILE ILE ALA SER ALA ALA LEU GLU ASN ASP LYS SEQRES 26 A 334 THR ILE LYS LEU TRP LYS SER ASP CYS SEQRES 1 B 7 ALQ 4FO ARG ABA DPN EDN S7Z HET ALQ B 401 5 HET 4FO B 402 7 HET ABA B 404 6 HET DPN B 405 11 HET EDN B 406 4 HET S7Z B 407 22 HETNAM ALQ 2-METHYL-PROPIONIC ACID HETNAM 4FO (2R)-2,4-DIAMINOBUTANOIC ACID HETNAM ABA ALPHA-AMINOBUTYRIC ACID HETNAM DPN D-PHENYLALANINE HETNAM EDN ETHANE-1,2-DIAMINE HETNAM S7Z (E)-(4-((2,6-DIFLUORO-4-(HYDROXYMETHYL)PHENYL) HETNAM 2 S7Z DIAZENYL)-2,6-DIFLUOROPHENYL)METHANOL HETSYN EDN ETHYLENEDIAMINE HETSYN S7Z [4-[(~{Z})-[2,6-BIS(FLUORANYL)-4-(HYDROXYMETHYL) HETSYN 2 S7Z PHENYL]DIAZENYL]-3,5-BIS(FLUORANYL)PHENYL]METHANOL FORMUL 2 ALQ C4 H8 O2 FORMUL 2 4FO C4 H10 N2 O2 FORMUL 2 ABA C4 H9 N O2 FORMUL 2 DPN C9 H11 N O2 FORMUL 2 EDN C2 H8 N2 FORMUL 2 S7Z C14 H10 F4 N2 O2 FORMUL 3 HOH *176(H2 O) HELIX 1 AA1 ALQ B 401 DPN B 405 5 5 SHEET 1 AA1 4 ALA A 36 LEU A 41 0 SHEET 2 AA1 4 ILE A 327 LYS A 331 -1 O ILE A 327 N LEU A 41 SHEET 3 AA1 4 ILE A 315 ALA A 320 -1 N ILE A 316 O TRP A 330 SHEET 4 AA1 4 VAL A 304 CYS A 309 -1 N ALA A 308 O ALA A 317 SHEET 1 AA2 4 VAL A 48 PHE A 53 0 SHEET 2 AA2 4 TRP A 59 SER A 64 -1 O SER A 63 N SER A 49 SHEET 3 AA2 4 LEU A 68 GLY A 73 -1 O TRP A 72 N LEU A 60 SHEET 4 AA2 4 PHE A 79 SER A 84 -1 O ILE A 83 N ILE A 69 SHEET 1 AA3 4 ILE A 90 TRP A 95 0 SHEET 2 AA3 4 LEU A 101 SER A 106 -1 O ALA A 105 N ASP A 92 SHEET 3 AA3 4 THR A 110 ASP A 115 -1 O TRP A 114 N LEU A 102 SHEET 4 AA3 4 CYS A 121 LYS A 126 -1 O LEU A 125 N LEU A 111 SHEET 1 AA4 4 VAL A 132 PHE A 137 0 SHEET 2 AA4 4 LEU A 143 SER A 148 -1 O VAL A 145 N ASN A 136 SHEET 3 AA4 4 VAL A 153 ASP A 157 -1 O TRP A 156 N ILE A 144 SHEET 4 AA4 4 CYS A 163 LEU A 167 -1 O LEU A 167 N VAL A 153 SHEET 1 AA5 4 VAL A 174 PHE A 179 0 SHEET 2 AA5 4 LEU A 185 SER A 190 -1 O VAL A 187 N HIS A 178 SHEET 3 AA5 4 CYS A 195 ASP A 199 -1 O TRP A 198 N ILE A 186 SHEET 4 AA5 4 CYS A 205 LEU A 209 -1 O LEU A 209 N CYS A 195 SHEET 1 AA6 4 VAL A 217 PHE A 222 0 SHEET 2 AA6 4 TYR A 228 THR A 233 -1 O LEU A 230 N LYS A 221 SHEET 3 AA6 4 THR A 237 ASP A 242 -1 O TRP A 241 N ILE A 229 SHEET 4 AA6 4 LYS A 247 TYR A 252 -1 O LYS A 247 N ASP A 242 SHEET 1 AA7 4 ALA A 264 SER A 267 0 SHEET 2 AA7 4 TRP A 273 SER A 276 -1 O TRP A 273 N SER A 267 SHEET 3 AA7 4 VAL A 283 ASN A 287 -1 O TYR A 284 N SER A 276 SHEET 4 AA7 4 ILE A 293 LEU A 297 -1 O VAL A 294 N ILE A 285 LINK C ALQ B 401 N 4FO B 402 1555 1555 1.29 LINK NZ 4FO B 402 CAA S7Z B 407 1555 1555 1.27 LINK C ARG B 403 N ABA B 404 1555 1555 1.34 LINK C ABA B 404 N DPN B 405 1555 1555 1.35 LINK C DPN B 405 NAA EDN B 406 1555 1555 1.28 LINK NAD EDN B 406 CB S7Z B 407 1555 1555 1.27 CRYST1 46.030 46.900 126.320 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021725 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021322 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007916 0.00000